Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_013059.1 Length=40975 Score E Sequences producing significant alignments: (Bits) Value seq201909 187 6e-43 seq36415 187 6e-43 seq413763 129 2e-25 seq422294 123 6e-24 seq136258 107 5e-19 seq153502 93.3 1e-14 seq226697 86.0 2e-12 >seq201909 Length=21394 Score = 187 bits (206), Expect = 6e-43 Identities = 136/153 (89%), Gaps = 10/153 (7%) Strand=Plus/Minus Query 39044 GGGCTTTTTTACATCTGCAGTAAACC---GCGCATCGCAGCGCGTAACAATCCCGAGTCT 39100 ||||||||||| |||||||| || |||||||||||||| || ||||||||||||| Sbjct 3787 GGGCTTTTTTA----TGCAGTAAGCCCCCGCGCATCGCAGCGCATATCAATCCCGAGTCT 3732 Query 39101 TTCAGAAAGCTGAGCCTGAGAACTGCCGTATATGGTGGCGACCATCTCGGGGACGGCTTT 39160 |||||||||||||||||||||| |||||||| |||| |||| |||||||| ||||||| Sbjct 3731 TTCAGAAAGCTGAGCCTGAGAAAAGCCGTATA-GGTGCGGACC-TCTCGGGG-CGGCTTT 3675 Query 39161 TCTGTGCGAACAGGCTCATCTTTCTAAAAGGTA 39193 ||||||||||||||||||||||||||||||||| Sbjct 3674 TCTGTGCGAACAGGCTCATCTTTCTAAAAGGTA 3642 >seq36415 Length=1575 Score = 187 bits (206), Expect = 6e-43 Identities = 502/750 (67%), Gaps = 26/750 (3%) Strand=Plus/Plus Query 19020 CTTTCTCATCCAACCAGTCTGCCCACCACTGCATCATCTCCCGTCGCGTATCAAGATAAG 19079 ||||| | || | |||||| ||||||||||||||||| || || ||| |||| ||||| Sbjct 287 CTTTC-CGTCAATCCAGTCAGCCCACCACTGCATCATTTCTCGCCGCTTATCCAGATACT 345 Query 19080 CTGCGTGGTTGTATACG----GATCTGGTGCCCCCGCTAACGTGTGCCAACTGCATTTCT 19135 ||||||||||| | | | | | | || | | || ||||||| | |||| | || Sbjct 346 GAGCGTGGTTGTAGATGCCACGTACAGAT-CCGCTGTTAGCGTGTGCAAGCTGCTTCTCA 404 Query 19136 ATCGCGTCGCTGTTCCAGTGCTTCTCGTTGAGTACCGTGCTGAATTGGTGCCTGAAACCG 19195 || || || | ||| | | ||||| | || |||||||| ||||| | |||||| Sbjct 405 ATGGCATCAGCGGGCCATTCATGTTCGTTCATTATTGTGCTGAACTGGTGGCGGAAACCA 464 Query 19196 TGGCCGCTGGTCTGTCCTTCATATCCTATACTGCG-GATTACACCAAGGACGGCGTTTTC 19254 || ||||| | | || || |||||||| |||| ||| ||| ||| ||||||||||| Sbjct 465 TGCCCGCTCGCAAGACCCTCGTATCCTAT-CTGCCTGATGACAAGAAGAACGGCGTTTTC 523 Query 19255 GCTGATTGGCTTTTTCCTGTCATTCCTTCCCGGGAA-GCAAAGT-TCGTACT-GTCCGGT 19311 ||| || | ||| || ||||||||||||| | || |||| | | || | |||| || Sbjct 524 GCTAATGGACTTCTTTTTGTCATTCCTTCCGGCAAACACAAAATCTGATATTGGTCCCGT 583 Query 19312 GATTTG-TTGCAGGAAT-TTGAAAAGCGCTGTAACTTGCTCTGACATTGGAACGACATGC 19369 || | || | | | ||| | | || || | |||||| ||||||| || Sbjct 584 TATGGGCTTTAACCCCTCAAGCAAATCCACG--ACCTGTTGTGACATCGGAACGATGTGA 641 Query 19370 AGTTTTCTTCCTTTCATGACTTCAGGGGCAACGGTGATCAGGCTGTTTTCAAAGTCAAT- 19428 | | | || ||||| || | || | ||| || ||| |||||||||| || Sbjct 642 ATTCGCCGACCCTTCATCACCTGTTCGGAGATGGTTATAGTCCTGGTTTCAAAGTCGATG 701 Query 19429 TCCTGACCATACCAACGAACGTAATTCCACCGTTCGCATTGCTGTATAGTGAAGAACCTG 19488 |||| ||||| || || || | ||| | ||||| | || || || ||||||||||| Sbjct 702 TCCT-TCCATAGCATGGAGCGCAGTTCGATAGTTCGGAGCGCCGTGTACTGAAGAACCTG 760 Query 19489 AGCAGCAATCTTACCTATAACCCAGCCTCC---ATACCCATTAAGCGCCCTCTGGAATTC 19545 | || | ||| | ||| || || | ||| ||||| | | || | Sbjct 761 CGTTGCCACCTT---TGAAACGATGCTCCCGGAGAAGCCAGCCAGCGCTTTATTAAACGC 817 Query 19546 GTGAATGCGATGCATAGGGAGGAAAGGGTAGTTGTTTTTTCTGTAACCCTTCATTGCCCC 19605 | || | | || |||||||||||||| ||||| | || |||||||| || | Sbjct 818 AGGTATCTGGTCGGCGGGAAGGAAAGGGTAGTTCTTTTTCCGATATCCCTTCATGGCGTC 877 Query 19606 AACAAGGTCTGGAGCCGGATTATATTTAGCTCTTCCGGTTACTATTGCGTAGCTGAAAAC 19665 | | ||||| || ||||| |||||||| |||| ||||| | ||| ||||| ||| || Sbjct 878 AGCCAGGTCAGGCGCCGGGTTATATTTGGCTCGCCCGGTAATTATCGCGTA---GAATAC 934 Query 19666 CTCGCCACACCTGCGCCGAGCCTTATCAGCACGCTCCATCGCTCCTCTGTCCTCAAATAG 19725 ||||| || ||||||| || |||| ||| |||||||| || || | ||||| || Sbjct 935 TTCGCCGCATCTGCGCCTGGCTTTATTAGCGCGCTCCATGGCGCCGCGAGATTCAAACAG 994 Query 19726 CCTGATCACCTTCAGTAGCATCATCGGCTC 19755 | || || | ||| | | |||| ||||| Sbjct 995 GCGAATGACTTCCAGAATCTTCATTGGCTC 1024 >seq413763 Length=251 Score = 129 bits (142), Expect = 2e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 2892 CGTTGAAGATAAAGAAGTGTATGAGGGTGTCGTCCGCCTGACAAAAGACGGTCAGCGTCT 2951 ||| || ||||||||||| || ||||| | |||||| | ||||||||||| ||||| || Sbjct 1 CGTCGAGGATAAAGAAGTCTACGAGGGCATTGTCCGCTTAACAAAAGACGGACAGCGACT 60 Query 2952 GCGCAACATGATTATGTCGTTCAACGCCGACATCGTGGCCCGTACTCCGAAGAAGAAGCC 3011 ||| |||||||||||| || ||||| || || ||||| || | || |||||||| Sbjct 61 GCGTAACATGATTATGAGCTTTAACGCTGATATTGTGGCGCGCAACCCTCGCAAGAAGCC 120 Query 3012 GTTCTTCTGGCCTGAACAGATTGCAGGATTTGAGCATATGTATGACGGTAACGACGATTA 3071 | || | ||||| || || | ||| | |||| ||||||| || | | || || Sbjct 121 TGTGTTTTACCCTGAGCAAATCGAAGGCTATGAGTATATGTACTCAGGCGATGCGGACTA 180 Query 3072 CCCGTATTACCTGCTCAATCGCACGGATGAGAACAA 3107 ||||||||||||| | || || || || || | ||| Sbjct 181 CCCGTATTACCTGATGAACCGTACCGACGAAAGCAA 216 >seq422294 Length=259 Score = 123 bits (136), Expect = 6e-24 Identities = 182/255 (71%), Gaps = 2/255 (1%) Strand=Plus/Minus Query 4243 CGATAATGCCAACGACAATGCAGGTCAGGAAGAGGGCTTTGAGATTGTCCTGAGGGACGA 4302 |||||||||||||| | || || || |||||||| |||||||||||| | || Sbjct 259 CGATAATGCCAACGGTGGCGAGGGGCAAGATGAGGGCTTCGAGATTGTCCTGTCTGGTGA 200 Query 4303 TGAGACAGCACCAAAACAAGACCCGGCAAAGAACGCAGAATTCGC-CCGCCGCCGCATCG 4361 ||||| | | |||||||||||||||| ||||| | || || | | || ||||| | Sbjct 199 CGAGACTGAAAAGAAACAAGACCCGGCAACCAACGCGAAGTTTGCACAGGCG-CGCATTG 141 Query 4362 AGCGCAAACGACAGCGCGAGCTTGAGCAGCAGATGGAAGCAGTTAAACGCGGAGAATTGC 4421 | || || || || ||||| | || ||||| | ||||| ||| || || || ||| Sbjct 140 AACGTAAGCGCCAACGCGAATTAGAACAGCAACTTGAAGCTGTTCGCCGTGGCGAGGTGC 81 Query 4422 CGGAGAGTTTACGGGTAAACCCTGACCTTCCACCTCAGCCGGATATTAATGCCTATCTGT 4481 |||||| | || ||||| |||||| | || |||||||| || || || ||||| | Sbjct 80 CGGAGACGCTGCGTGTAAATCCTGACTTACCGCCTCAGCCTGACATCAACCAGTATCTCT 21 Query 4482 CAGAAGAAGGCCTGG 4496 | || |||||| ||| Sbjct 20 CCGATGAAGGCTTGG 6 >seq136258 Length=1331 Score = 107 bits (118), Expect = 5e-19 Identities = 211/307 (69%), Gaps = 10/307 (3%) Strand=Plus/Plus Query 25488 TCAGTGGTGTAGCGGTCTTGCCCTGTCTGGTCTTGCCACTTTCTGGTTCTCAGCATTCCC 25547 || |||||||| || || || || ||| || ||||| || | ||| | |||| || Sbjct 59 TCGGTGGTGTAACGCTCCTGGCCACCCTGATCCTGCCATTTACGGGTGCGCAGCTGGCCT 118 Query 25548 TCGAAATAAACCTGATCACCTTTTTTCACATACTGCCCTACGACTTCAGCAAGTTTCCCA 25607 |||| ||| ||||| |||||||||| || | || |||||||||| ||||| ||| Sbjct 119 TCGATATAGACCTGCGACCCTTTTTTCAGGTATTCACCCGCGACTTCAGCCAGTTTGCCA 178 Query 25608 ACTACGGCAACACGATGCCATTCAGTCTGCTCCTTTTGTTCGCCAGTCTGTTTATCTCGC 25667 | | | ||||| ||||||||||| ||| || | ||| || ||||| || || ||| Sbjct 179 AACAGAACCACACGGTGCCATTCAGTGATCTCTTTGTTTTCACCGGTCTGCTTGTCGCGC 238 Query 25668 CACTGCTCTGATGTAGCGACTGTCAGGTTAGCGAACGCCGTC-CCTGATGGTGAATAACG 25726 || || || ||||| | || | ||| || ||| || | || ||| |||||| Sbjct 239 CAGCTTTCCGACGTAGCCAGCGTAATGTTGGC-AACAGCGCCACCATTTGGCATATAACG 297 Query 25727 AACCTCCGGGTCTTGCCCGA----CCCGGCCTAAGATGATCACCTTATTTACGCCTCTAC 25782 || ||||| || || || | |||| | |||| ||||| || || ||||| | || Sbjct 298 TACTTCCGGATCCTGACCCAGATTCCCGAC--AAGA--ATCACTTTGTTAACGCCACGAC 353 Query 25783 TAGCCAT 25789 | ||||| Sbjct 354 TGGCCAT 360 >seq153502 Length=4143 Score = 93.3 bits (102), Expect = 1e-14 Identities = 234/351 (67%), Gaps = 10/351 (3%) Strand=Plus/Plus Query 25445 GCCTCCAAGCATTTGCATCACACCATTAATTCCAACATTAATCTCAGTGGTGTAGCGGTC 25504 ||| |||||||| ||||| ||| || |||| | || |||||||| || || Sbjct 1922 GCCGCCAAGCATCTGCATGGTACCGCCAACGTTAACAACCACTTCGGTGGTGTAACGATC 1981 Query 25505 TTGCCCTGTCTGGTCTTGCCACTTTCTGGTTCTCAGCATTCCCTCGAAATAAACCTGATC 25564 ||| || ||||||||||| || | || | ||| || |||| |||||||||| Sbjct 1982 TTGGCCACCTTGGTCTTGCCATTTGCGCGTACGCAGTTGACCTTCGATATAAACCTGAGA 2041 Query 25565 ACCTTTTTTCACATACTGCCCTACGACTTCAGC-AAGTTTCCCAACTACGGCAACACGAT 25623 ||||| || ||| | || | ||||| || || || || ||| || ||||||| | Sbjct 2042 GCCTTTACGCAGATATTCGCCAGCAACTTCTGCTAATTTACCGAACAAC-ACAACACGGT 2100 Query 25624 GCCATTCAGTCTGCTCCTTTTGTTCGCCAGTCTGTTTATCTCGCCACTGCTCTGATGTAG 25683 |||||||||| ||| || | ||| || || || ||||| ||||| || || || | Sbjct 2101 GCCATTCAGTAATCTCTTTATTTTCACCGGTTTGCTTATCACGCCAGCTTTCAGAGGTTG 2160 Query 25684 CGACTGTCAGGTTAGCGAACGCCGTCCCTGATGGTGAATAACGAACCTCCGGGTCTTGCC 25743 | | ||| | ||| | | ||| || ||| ||| || || || || ||||| | Sbjct 2161 CCAGTGTAATGTTTGTCACAGCCCCTCCATTTGGCATATACCGGACTTCTGGATCTTGAC 2220 Query 25744 CGA----CCCGGCCTAAGATGATCACCTTATTTACGCCTCTACTAGCCATT 25790 | | ||| | |||| ||||| || |||||||| | ||| |||||| Sbjct 2221 CCAAATTACCGAC--AAGA--ATCACTTTGTTTACGCCGCGACTGGCCATT 2267 >seq226697 Length=878 Score = 86.0 bits (94), Expect = 2e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 25448 TCCAAGCATTTGCATCACACCATTAATTCCAACATTAATCTCAGTGGTGTAGCGGTCTTG 25507 ||| | |||||||||| ||| ||| ||| |||| || || || || || || | Sbjct 652 TCCTAACATTTGCATCGTACCGCCAATGTTAACTATAATTTCTGTTGTATAACGTTCAAG 711 Query 25508 CCCTGTCTGGTCTTGCCACTTTCTGGTTCTCAGCATTCCCTCGAAATAAACCTGATCACC 25567 || | ||||||||||| ||||| ||| || ||| || | ||| || ||| ||| Sbjct 712 ACCATTTTGGTCTTGCCATTTTCTAGTTTGAAGGGATCCTTCAATATATACTTGAGAACC 771 Query 25568 TTTTTTCACATACTGCCCTACGACTTCAGCAAGTTTCCCAACTACGGCAACACGATGCCA 25627 |||| ||| ||| | || | | |||||| | ||| |||| || | | | |||||| Sbjct 772 TTTTCTCAAATATTCTCCAGCAATTTCAGCCAATTTTCCAAATAATACTATTCTATGCCA 831 Query 25628 TTCAGTCTGCTCCTTTTGTTCGCCAGTCTGTTTATCT 25664 ||| || | ||| || | ||| ||||| | ||||||| Sbjct 832 TTCTGTTTTCTCTTTATTTTCACCAGTATTTTTATCT 868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130221808817074