Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq121512 149 8e-31 seq271511 93.3 5e-14 seq170665 86.0 8e-12 >seq121512 Length=219671 Score = 149 bits (164), Expect = 8e-31 Identities = 312/454 (69%), Gaps = 12/454 (3%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| || ||||| ||||||||||||||||| ||||| || | || ||| |||||| Sbjct 212588 GTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCAT 212647 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCTGTTTGAGGAGA 127348 | || || ||||| | | ||| | | || ||| || |||| | |||| || Sbjct 212648 CCAGTCGAACGGGTTGGTGGCGTTGTACAGCTTCTTG-CAGCCCAG-CGCCATGAGCAGG 212705 Query 127349 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 127408 || || | |||| |||| ||||||| ||| || |||||| |||| ||| Sbjct 212706 CGGTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCG 212765 Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468 || ||||||||||| ||| |||| || |||| |||||||| || || ||||| || Sbjct 212766 CAGGGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCCTCGGACACGATCTCG 212825 Query 127469 T-GAATAGTGTCCACCCCAGGTCTATTGCGTA--AAGTCTT-GAAGAGTTCCACAGCAAA 127524 || | | | |||| | | ||| | | ||| | || ||| || || || Sbjct 212826 AAGACGCGGGACTCGTCCAGCT-TGCCGCGGAGGATGTCGTAGAGGAGG--CAG-GCGAA 212881 Query 127525 CTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCAT 127584 || ||| || |||||||| ||||||||||| || || |||||| || || ||||| Sbjct 212882 GTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCAT 212941 Query 127585 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTC 127644 ||| || |||||||| | |||||| || || || || ||||| ||||||||||| ||||| Sbjct 212942 GAGCCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTC 213001 Query 127645 CACACACGCGAACGCAAATAGACGCTCGGCAAAG 127678 || || ||||| || | | ||||| || ||| Sbjct 213002 GACGCAGGCGAAGGCGACGATGCGCTCCGCGAAG 213035 >seq271511 Length=5505 Score = 93.3 bits (102), Expect = 5e-14 Identities = 280/424 (66%), Gaps = 14/424 (3%) Strand=Plus/Minus Query 12657 ATCTTCTCGCGTCCGCGCACACTGGGTAGGGACACGGTGATCTTACGATCAAAGCGACCT 12716 |||| ||| || ||||| ||| || ||| || | || ||| |||||||| ||| Sbjct 4246 ATCTGCTCACGACCGCGAACATCTGGCAGGCCAACAACAACCTGACGGTCAAAGCGTCCT 4187 Query 12717 GGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATG 12776 || || || || || ||| || | ||| ||||| || || ||||| || | || Sbjct 4186 GGACGCAGCAGCGCAGGGTCCAGTACGTCAGGACGGTTAGTTGCGGCGATAACGATAATA 4127 Query 12777 CCCGTCTCGTTA---TCGAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCA 12833 || |||||| ||||| |||||||||||| || | || || | || || ||| Sbjct 4126 CCT---TCGTTACCTTCGAAACCATCCATCTCAACCAGCATCTGGTTCAGCGTCTGCTCA 4070 Query 12834 CGTTCATCAT-TCGCGGGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTC 12892 ||||| |||| || || || ||| || | || || |||||| ||||| || || Sbjct 4069 CGTTCGTCATGTCCACCGCCTAA-ACCGGCGCCACGCTGACGACCGACTGCGTCGATCTC 4011 Query 12893 GTCAATGAAAACGATACACGGTT--GATTTTCACGGGCAACTTCAAAGATATCTCGCACT 12950 || || || | ||| ||||| | |||| ||| ||| || || || ||||| Sbjct 4010 ATCGATAAAGATGATGCACGGAGCCGCTTTTTT--GGCCTGTTCGAACATGTCACGCACA 3953 Query 12951 CTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAA 13009 | ||||||||||| |||||||| |||||||| | | ||| | || | | ||| Sbjct 3952 CGGGATGCACCGACACCGACAAACATTTCCACAAAGTCAGAACCGG-AGATGGTAAAGAA 3894 Query 13010 GGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTT 13069 || || || | |||||| || || ||| || || | ||| || || || || ||| Sbjct 3893 AGGCACCTTCGCTTCACCGGCAATCGCTTTTGCCAGCAAGGTTTTACCGGTACCCGGTGG 3834 Query 13070 CCCC 13073 |||| Sbjct 3833 CCCC 3830 >seq170665 Length=56631 Score = 86.0 bits (94), Expect = 8e-12 Identities = 194/289 (67%), Gaps = 16/289 (6%) Strand=Plus/Plus Query 12705 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 12764 |||||||| || || | || | ||| || | ||| ||| | ||| || || || Sbjct 42215 TCAAAGCGTCCAGGTCTAAGCAAAGCGGAATCCAAGATGTCAGCCCTGTTGGTGGCAGCA 42274 Query 12765 ATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATTGATG 12824 | |||| |||||| || | | || || |||||||||||||||| || ||||||| Sbjct 42275 ACAACAATGATGCCAGTGTTGCCCTCAAAACCATCCATCTCAGTCAGTAGCTGATTGAGA 42334 Query 12825 GTTTGTTCACGTTCATCATTCGCGGGCATACCACCCGCA-CTG-----CGTTGCTTACCG 12878 || || || | |||||| ||| | |||||| | ||| | |||| | || Sbjct 42335 GTCTGCTCCCTTTCATCGTTCCC------ACCACCGATACCTGTTCCTCTTTGCCTCCCA 42388 Query 12879 ACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTC--AA 12936 || || |||||||| |||| || || || || || ||| || ||| |||| | Sbjct 42389 ACAGCATCAATTTCATCAACAAACACTATGCAAGGAGCATTCTCCTTGGC--CTTCTTGA 42446 Query 12937 AGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 12985 ||| ||| || || | |||||| ||||| |||||||||||||| || Sbjct 42447 AGAGATCACGAACACGGGAGGCACCAACACCAACAAACATCTCCACGAA 42495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 609678754026360