Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq121512 179 6e-40 seq270514 86.0 1e-11 >seq121512 Length=219671 Score = 179 bits (198), Expect = 6e-40 Identities = 503/765 (66%), Gaps = 24/765 (3%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| |||||||||||||||| || || || ||||| | |||| ||||| Sbjct 212603 CTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCATCCAGTCGAACGGGTT 212662 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 | ||| || ||||| | || || ||| |||| | ||| || || || || Sbjct 212663 GGTGGCGTTGTACAGCTTCTTGCAGCCCAGCGCCATGAGCAGGCGGTCGGCGACGAACTC 212722 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| | ||| | || | ||| || || | ||| ||||||||| || | Sbjct 212723 GATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGCAGGGGAGCGCGTCGCA 212782 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGT---TCGTA 159885 | |||||| |||| || || || || |||| ||| |||| |||| || |||| Sbjct 212783 GACGAACTCCCTCTCGATGTCCACGGCCTCGGACACGATCTCGAAGACGCGGGACTCGT- 212841 Query 159886 CCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCC 159945 || ||||||| | | ||| | | |||||||| || |||||||||||||| || Sbjct 212842 --CCAGCTTGCCGCGGAGGATGTCGT---AGAGGAGGCAGGCGAAGTCGCAGTGCAGGCC 212896 Query 159946 CTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTT 160005 |||||| || ||||||| ||||||||| | | ||||||||||||||| ||| ||| || Sbjct 212897 CTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGCCCGCGCTTCTT 212956 Query 160006 GAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAACG 160064 |||||| || |||| |||| ||| | | | | || ||||| ||||| ||| || || | Sbjct 212957 GAGCCAGAAGATGG-CGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCAGGCGAAGG 213015 Query 160065 CCACGAGCCTCTCACCAAAAGAGGCG-TTGGTGTCATGGGTCCACCTTTTGGCCCATTCA 160123 | |||| | ||| | || ||| | | | | | |||| | ||||| || Sbjct 213016 CGACGATGCGCTCCGC----GAAGCGCTCCCCGCCGTCGATCCAGCGGAGCGCCCAGTCG 213071 Query 160124 GCCTTCTTTGCGATGCACGGC----ATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTC 160179 ||| ||||| ||||||| ||| |||| |||| || | | ||||| ||| Sbjct 213072 GCC----TTGCGGCGCACGGCGGGGATGGTGTCGATGGCGCGGAAGAGGCGGTCCTTCTC 213127 Query 160180 CTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTC 160239 | || ||| || | || ||| |||||||| || | ||| | || || Sbjct 213128 GACGTCGTCGCGGATGTAGGTCTCGATGAGCAGGGAGTACATCTCGGAGTGGATGTTCTC 213187 Query 160240 GATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGAA 160299 |||||| ||||| ||| |||||| | ||||| |||||| || |||| Sbjct 213188 GATGGCGATCTGGAAGCCGTAGAAGGCCCTGGCCTCGGCGACCTGCACGTCGGACATGAA 213247 Query 160300 CCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTG 160359 ||| | || || | || | ||||| | ||| || ||||| || | |||||| Sbjct 213248 CCTGGAGGCGAGGTTCTCGAGCACGATGCCGTCCGAGGCGGCGAAGAAGGCGAGCACGTG 213307 Query 160360 AGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTG 160404 |||||||| || | |||||| ||| ||| || | | |||||| Sbjct 213308 GGAGATGAAGTGGCGCTCGTCGTTGGAGAGCGTCGTGTGCCAGTG 213352 >seq270514 Length=43771 Score = 86.0 bits (94), Expect = 1e-11 Identities = 127/178 (71%), Gaps = 9/178 (5%) Strand=Plus/Plus Query 159814 GGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGA 159873 ||||||||| || | |||||| |||| || || || || |||| ||||||| | Sbjct 5209 GGGGAGCGCGTCGCAGGTGAACTCCCTCTCGATATCCACGGCCTCGGAGACAATCTCGAA 5268 Query 159874 GACACG---TTCGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAA 159930 ||| || || || | |||||| || | | ||| | | |||||||| || || Sbjct 5269 GACGCGGGATTTGT---CGAGCTTGCTGAAGAGGATGTCGT---AGAGGAGGCAGGCGAA 5322 Query 159931 GTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGC 159988 |||| ||||||| ||||| || || ||||||| ||||||||| | ||||||||||| Sbjct 5323 GTCGTAGTGCAGACCCTCATCGCGGGAGATGAGCTCGTTGGAGAACGTGAGGCCCGGC 5380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 790193222823760