Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_013693.1 Length=158006 Score E Sequences producing significant alignments: (Bits) Value seq1462 89.7 5e-13 seq302683 86.0 6e-12 seq163857 82.4 8e-11 >seq1462 Length=4781 Score = 89.7 bits (98), Expect = 5e-13 Identities = 273/422 (65%), Gaps = 0/422 (0%) Strand=Plus/Minus Query 53641 ACCAGGCGCTCAAACATCACGCGGTTGATCTGAATACCGTAGTCGATACGGCGTTCGCGG 53700 ||||| || | | |||| | |||||| || | ||||| || | | || | ||| Sbjct 1460 ACCAGACGTTGATACATGAGTTTGTTGATTTGTACGCCGTAATCTAGGTGACGGACACGG 1401 Query 53701 TTTTCTTCAGTGCCACGGTTATTCTTCAGTACAACGACGTCATCGAACTGGTAATGCCAC 53760 || ||||| ||||||||||| ||||| || | | | || | | | |||||| Sbjct 1400 TTACCTTCAACACCACGGTTATTTTTCAGGACTAATAAGCTTTCAATTTCCAAGTGCCAC 1341 Query 53761 AGAGGGATGTACGCTGTCGCCGCACCACCACGAATGCCGCCCTGGGAGCAAGACTTGAGC 53820 | |||| || |||||| ||||| || || | |||||| || |||||||| || | Sbjct 1340 ATAGGGTAAAACAGTGTCGCGGCACCCCCGCGTACGCCGCCTTGCGAGCAAGATTTCACG 1281 Query 53821 GCCCCAGTGAGATACTTGATGAATGGGATCAGGCCTGTGTGAACCATCTCTCCGCCGCGA 53880 ||| || | ||| ||| ||||| || || || | || || || || Sbjct 1280 GCCGTCTGGAAGTGTTTGTAGAACGGGATACAACCGGTATGGAAAGCTTCACCACCACGG 1221 Query 53881 ATAGGACTGCCAATCCCACGGATAGCCCCGACGTCAAAGCCGATACCCGCACGTTTGGAC 53940 || || ||||| | | |||| ||| || | | | ||||| || || |||| || Sbjct 1220 ATTGGGCTGCCTAGCGCACGAATACGGCCAGCATTGATACCGATCCCTGCGCGTTGTGAA 1161 Query 53941 ACATAGTCAACGATGGTCTTGGCCGTTGCGTTGATAGAGTCCAGGGTGTCACCAGTTTTG 54000 || || | |||||| | | | || |||||||||||||| | | | || ||| | | Sbjct 1160 ACGTATTTAACGATAGCACTAGAAGTGGCGTTGATAGAGTCTAAGCTATCGCCACACTCG 1101 Query 54001 ATCAGGACACAGGAACTGAACTGACGGGTAGGAGTACGAACACCTGCCATAATCGGGGTG 54060 || || || || || ||||| || || || || || || || || ||||| || || || Sbjct 1100 ATAAGCACGCATGAGCTGAATTGGCGAGTCGGCGTCCGTACCCCAGCCATGATTGGCGTA 1041 Query 54061 GG 54062 || Sbjct 1040 GG 1039 >seq302683 Length=202 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/206 (71%), Gaps = 8/206 (4%) Strand=Plus/Minus Query 86848 CCAGACCGGACAGCTGCTCAGTGCTTGGCTGTACTTTAATCTTACC-GCCTAACAT-TTC 86905 |||| ||| ||| ||||| || || | ||||| ||||| || ||| | || ||| Sbjct 202 CCAGGCCGCTCAGTTGCTCCGTTGATGCTGGAACTTTCATCTTGCCAGCC--AGATGTTC 145 Query 86906 AAAAACCTTGCGGTGTTTATCAAGTTCCGGCTTCAGATATTCGTTGTAGAAGCCACGAGT 86965 || || |||||||| | | | ||||| ||| || ||||||||||| || ||||| Sbjct 144 GAACACTTTGCGGTGCTCAACCAGTTCATTACGCAGGTACTCGTTGTAGAAACCGCGAGT 85 Query 86966 GCCGACAGGGTTAGCACA--ACCTTCCAGGATGAAGAACACGTGCTTGTTGCCCGTCTGC 87023 | || | ||||| ||| ||||| |||||||| ||||||||||| ||| Sbjct 84 AGAACCCGGCT--GCACAGCACCGTCCAGCATGAAGAAGTAATGCTTGTTGCCAGTCGCT 27 Query 87024 TCGCCGTCCCAATGGTTTGGTGAGTT 87049 || |||||||||||||| || ||||| Sbjct 26 TCCCCGTCCCAATGGTTCGGAGAGTT 1 >seq163857 Length=4767 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 138202 TGTAGTTCAGTCGGTAGAACGGCGGTCTGTTAAACCGTATGTCGCAGGTTCAAGTCCTGC 138261 ||||||||||||||||||||||||| ||||||| ||||||||| | ||||| ||||| | Sbjct 4438 TGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGT 4379 Query 138262 CATCGTCGCCAGA 138274 || | |||||| Sbjct 4378 CAGAGGAGCCAGA 4366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 502336802220560