Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_014036.1 Length=174436 Score E Sequences producing significant alignments: (Bits) Value seq260686 248 1e-60 seq65234 194 2e-44 seq79071 187 3e-42 seq1462 174 2e-38 seq222524 129 7e-25 seq209331 113 5e-20 seq494847 102 9e-17 seq498467 89.7 6e-13 >seq260686 Length=13603 Score = 248 bits (274), Expect = 1e-60 Identities = 333/462 (72%), Gaps = 6/462 (1%) Strand=Plus/Plus Query 41091 TCTCTACCGACTCCAATTATGGCGGGTGTACGTACTCCTACGCGCCAGTTCTCCAGTTGT 41150 || || ||||| ||||||||| | || || || || || |||||||||||| | || Sbjct 5181 TCGCTGCCGACGCCAATTATGTCCGGCGTGCGCACCCCGACGCGCCAGTTCAGCTCCTGC 5240 Query 41151 GTAGTAATTGAATCGGGTGATTCTCTTGGTTCTCTTAACGCTGTAACCTC---TGCGATC 41207 ||| | ||||| | || || |||| ||| ||||||| ||||| ||||| Sbjct 5241 GTACTGATTGAGTGCGGCGACAGCCTTGATTCCATTAACGC---CACCTCCAGCGCGATT 5297 Query 41208 GTGAAGTATATTTCACAACGTGCTGGTATTGGGGTTAACGCGGGACATATTCGCGCAATG 41267 |||||||| |||| || ||||| ||||| || ||||||| || | || || || || Sbjct 5298 GTGAAGTACGTTTCTCAGCGTGCCGGTATCGGCATTAACGCCGGTCGCATCCGTGCGCTG 5357 Query 41268 GGTTCTAAAATCCGTGGTGGTGAAGCTGTTCATACTGGTGTGATTCCTTTCTGGAAACAT 41327 || ||||| || |||||||| | || || || ||||| |||| || || Sbjct 5358 GGCAGCCCGATCCGCGGCGGTGAAGCATTCCACACCGGCTGCATTCCGTTCTATAAGCAC 5417 Query 41328 ATCCAAACCGCTGTTAAATCCTGTTCACAGGGTGGCGTTCGTGGTGGTGCTGCAACACTG 41387 |||| ||||| || || ||||| || ||||| ||||| || || ||||| || || ||| Sbjct 5418 TTCCAGACCGCGGTGAAGTCCTGCTCTCAGGGCGGCGTGCGCGGCGGTGCAGCGACCCTG 5477 Query 41388 TATTATCCTTTCTGGCATCTGGAAGTTGAAAACCTTCTGGTGTTGAAGAACAACAAAGGC 41447 | || || | |||||||||||||| |||| ||| |||||| ||||||||||| ||| Sbjct 5478 TTCTACCCAATGTGGCATCTGGAAGTGGAAAGCCTGCTGGTGCTGAAGAACAACCGCGGC 5537 Query 41448 GTAGAAGAAAACCGCGTTCGTCATCTTGATTACGGTGTACAGCTTAACCAGTTGATGTAT 41507 || |||| |||||||| |||||| | || ||||| || ||||| ||| || |||||||| Sbjct 5538 GTTGAAGGCAACCGCGTGCGTCATATGGACTACGGCGTGCAGCTGAACAAGCTGATGTAT 5597 Query 41508 AAACGCTTAATGAATCGTGATTACATTACGCTGTTTAGTCCG 41549 | ||| | |||| |||| | ||||| ||||| || ||| Sbjct 5598 CAGCGCCTGCTGAAGGGTGAAGAGATTACTCTGTTCAGCCCG 5639 Score = 102 bits (112), Expect = 9e-17 Identities = 195/285 (68%), Gaps = 8/285 (3%) Strand=Plus/Plus Query 42289 ACGGCTTGCGCAACTCTACTCTTTCTGCTTTAATGCCTTGTGAAAGTAGTTCACAGGTTA 42348 ||||| ||||||||||||| || ||||| | ||||| | ||| | ||| ||| | Sbjct 6391 ACGGCCTGCGCAACTCTACGCTCTCTGCCCTGATGCCGTCTGAGACCTCTTCCCAGATCT 6450 Query 42349 GTAACTCTACCAACGGGATCGAACCTCCGCGCGGTTTAGTGAGTATCAAATCTTCGAAAG 42408 ||| | |||||||| || ||||| ||||||||| | || || ||| | ||||||| Sbjct 6451 CGAACGCCACCAACGGTATTGAACCACCGCGCGGTCATATCAGCATTAAAGCGTCGAAAG 6510 Query 42409 AAGGACACTAT-AACCAGGTTGTGCCTAACCAGAATAACCAGATTGATTTCTATGATCTG 42467 | || || | | ||||| ||||| | | | || || ||| ||| || ||| Sbjct 6511 ACGG-CATTCTGCGTCAGGTGGTGCCAGAGTATGAGCGCCTGAAAGATAACTACGAACTG 6569 Query 42468 CTCTGGGATATGGCTAAACGCGGTAACAAAGGGTATCTGTCTCATGTAGCAGTTATGCAG 42527 || ||||||||| | || |||| | || || ||| | || | | |||||| Sbjct 6570 CTGTGGGATATGCCAAA------TAACGACGGTTACCTGCAGCTGGTCGGCCTGATGCAG 6623 Query 42528 AAGTTTGTCGATCAGTCTATTTCTGCAAACACCAACTATGACCCG 42572 || ||| |||| ||| | ||||| | ||||||||||| |||||| Sbjct 6624 AAATTTATCGACCAGGCCATTTCATCCAACACCAACTACGACCCG 6668 Score = 91.5 bits (100), Expect = 2e-13 Identities = 200/296 (68%), Gaps = 4/296 (1%) Strand=Plus/Plus Query 42860 GCAGAAACACAAAGTTTTCGAAAGCCTGACGCAAAAACAACTTTCTTTCTTCTGGCGTCC 42919 ||||||| | | | || |||| |||| |||| || || |||||||||||||| || Sbjct 7035 GCAGAAATATGACATCTTTGAAAAGCTGATCGAAAAGCAGCTCTCTTTCTTCTGGCGCCC 7094 Query 42920 GGAAGAAGTCGATCTGTCTACTGACCGTATGCAGTATGCAAAACTTCCTGAACATGAAAA 42979 ||||||||| || | || || ||||| | ||| || || || || ||||| Sbjct 7095 GGAAGAAGTGGACGTCTCGCGCGATCGTATTGACTATCAGGCGCTGCCAGAGCACGAAAA 7154 Query 42980 AATCATTTTCGATTCTAACCTACAGTATCAAACCCTGTTAGATACCATTCAGGGACGTGG 43039 | ||| || ||||| ||||||| || ||| | || | ||||||||||| | Sbjct 7155 ACACATCTTTATCAGCAACCTGAAGTATCAGACTCTGCTGGACTCTATTCAGGGACGCAG 7214 Query 43040 GCCTAACCTCGCATTTTTGCCAATTGCATC-CGATGTGAGCA-TGGAAACCTGGATCGAA 43097 || ||| | || || |||| | ||| |||| | | ||||||||||||| ||| Sbjct 7215 CCCGAACGTGGCGTTGCTGCCGCT--GATCTCGATCCCGGAACTGGAAACCTGGATTGAA 7272 Query 43098 ACGTGGGCGTTTAGTGAAACCATCCACAGCCGTAGTTACACGCATATTCAACGTAA 43153 || |||||||| || || |||||| ||| ||||| |||||| ||||| Sbjct 7273 ACCTGGGCGTTCTCCGAGACTATCCACTCGCGTTCGTACACCCATATTATTCGTAA 7328 >seq65234 Length=1614 Score = 194 bits (214), Expect = 2e-44 Identities = 315/451 (70%), Gaps = 2/451 (0%) Strand=Plus/Minus Query 41061 TTTTATAACGCAATTTCCGATCGCAAACTGTCTCTACCGACTCCAATTATGGCGGGTGTA 41120 |||||||| ||||||||| | ||| | |||||||| || || |||||| | || ||| Sbjct 1092 TTTTATAATGCAATTTCCACTTTTAAAATATCTCTACCCACACCGATTATGTCAGGAGTA 1033 Query 41121 CGTACTCCTACGCGCCAGTTCTCCAGTTGTGTAGTAATTGAATCGGGTGATTCTCTTGGT 41180 | || || || || || || |||||| ||||||||| | ||| | | Sbjct 1032 AGAACACCAACTCGTCAATTTAGTTCTTGTGTGTTAATTGAATGTGCAGATAATTTAAAC 973 Query 41181 TCTCTTAACGCTGTAACCTCTGCGATCGTGAAGTATATTTCACAACGTGCTGGTATTGGG 41240 ||| |||| ||| ||| ||| || || || ||| |||| ||||| || || || || Sbjct 972 TCTATTAATGCTACAACTAGTGCAATTGTAAAATATGTTTCTCAACGAGCAGGAATAGGC 913 Query 41241 GTTAACGCGGGACATATTCGCGCAATGGGTTCTAAAATCCGTGGTGGTGAAGCTGTTCAT 41300 ||||||| || || ||||| || | || | ||| | ||| ||||| ||||| Sbjct 912 ATTAACGCTGGTCAAATTCGAGCTTTAGGAAGTCCTATCAGAAATGGAGAAGCATTTCAT 853 Query 41301 ACTGG-TGTGATTCCTTTCTGGAAACATATCCAAACCGCTGTTAAATCCTGTTCACAGGG 41359 || || ||| |||||||| | ||||| |||||| ||| || ||||| ||||| || || Sbjct 852 ACCGGATGT-ATTCCTTTTTATAAACACTTCCAAAGCGCAGTAAAATCTTGTTCTCAAGG 794 Query 41360 TGGCGTTCGTGGTGGTGCTGCAACACTGTATTATCCTTTCTGGCATCTGGAAGTTGAAAA 41419 ||| ||| | || || || ||||| | | ||| || | |||||||| ||| ||||||| Sbjct 793 TGGAGTTAGAGGAGGGGCCGCAACTGTTTTTTACCCAATATGGCATCTAGAAATTGAAAA 734 Query 41420 CCTTCTGGTGTTGAAGAACAACAAAGGCGTAGAAGAAAACCGCGTTCGTCATCTTGATTA 41479 | | || || || || || | ||| | |||||||| | || |||||||||||||| Sbjct 733 TTTATTAGTTTTAAAAAATAATAGAGGAATTGAAGAAAATAGAGTACGTCATCTTGATTA 674 Query 41480 CGGTGTACAGCTTAACCAGTTGATGTATAAA 41510 | |||||| |||| | || |||||| || Sbjct 673 TGCTGTACAAATTAATAAATTAATGTATCAA 643 >seq79071 Length=852 Score = 187 bits (206), Expect = 3e-42 Identities = 153/186 (82%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 51218 GTGGAAGGTGGACAGCATTTAAACGTAAACGTGTTGCGCCGCGAAACTCTCCTGGATGCG 51277 || ||||||||||||||| | ||||| ||||| |||| |||||||| || ||||| Sbjct 366 GTTGAAGGTGGACAGCATCTGAACGTCAACGTTCTGCGTCGCGAAACGCTGGAAGATGCA 307 Query 51278 GTTGAACATCCTGAAAAATACCCACAGTTAACGATCCGTGTTTCTGGTTATGCAGTGCGT 51337 ||| ||||||||||||| || || ||| | || ||||||||||| || ||||| |||||| Sbjct 306 GTTAAACATCCTGAAAACTATCCGCAGCTGACTATCCGTGTTTCAGGCTATGCCGTGCGT 247 Query 51338 TTTAACTCACTGACCCCTGAACAGCAACGCGACGTTATCGCCCGAACCTTTACAGAGAGT 51397 |||||||||||||| ||||| ||||| |||||||| || |||| |||||||| || ||| Sbjct 246 TTTAACTCACTGACGCCTGAGCAGCAGCGCGACGTAATTACCCGTACCTTTACTGAAAGT 187 Query 51398 CTATAA 51403 || ||| Sbjct 186 CTTTAA 181 >seq1462 Length=4781 Score = 174 bits (192), Expect = 2e-38 Identities = 292/421 (69%), Gaps = 6/421 (1%) Strand=Plus/Plus Query 41095 TACCGACTCCAATTATGGCGGGTGTACGTACTCCTACGCGCCAGTTCTCCAGTTGTGTAG 41154 |||| || ||||| ||||| || ||||| || || || ||||| ||| | || || Sbjct 1037 TACCTACGCCAATCATGGCTGGGGTACGGACGCCGACTCGCCAATTCAGCTCATGCGTGC 1096 Query 41155 TAATTGAATCGGGTGATTCTCTTGGTTCTCTTAACGCTGTAACCTCT---GCGATCGTGA 41211 | || || | || ||| | | ||| | ||||| || ||| || ||||| | Sbjct 1097 TTATCGAGTGTGGCGATAGCTTAGACTCTATCAACGCC---ACTTCTAGTGCTATCGTTA 1153 Query 41212 AGTATATTTCACAACGTGCTGGTATTGGGGTTAACGCGGGACATATTCGCGCAATGGGTT 41271 | || |||||||||| || || || || | || || || | |||||| || | || Sbjct 1154 AATACGTTTCACAACGCGCAGGGATCGGTATCAATGCTGGCCGTATTCGTGCGCTAGGCA 1213 Query 41272 CTAAAATCCGTGGTGGTGAAGCTGTTCATACTGGTGTGATTCCTTTCTGGAAACATATCC 41331 ||||||||||||||||||| | ||||| ||| || || |||| ||||| ||| Sbjct 1214 GCCCAATCCGTGGTGGTGAAGCTTTCCATACCGGTTGTATCCCGTTCTACAAACACTTCC 1273 Query 41332 AAACCGCTGTTAAATCCTGTTCACAGGGTGGCGTTCGTGGTGGTGCTGCAACACTGTATT 41391 | || || || ||||| || || || || ||||| || || ||||| || ||||||| || Sbjct 1274 AGACGGCCGTGAAATCTTGCTCGCAAGGCGGCGTACGCGGGGGTGCCGCGACACTGTTTT 1333 Query 41392 ATCCTTTCTGGCATCTGGAAGTTGAAAACCTTCTGGTGTTGAAGAACAACAAAGGCGTAG 41451 | ||| | ||||| ||||| |||||| | | | || |||| || ||| || || | Sbjct 1334 ACCCTATGTGGCACTTGGAAATTGAAAGCTTATTAGTCCTGAAAAATAACCGTGGTGTTG 1393 Query 41452 AAGAAAACCGCGTTCGTCATCTTGATTACGGTGTACAGCTTAACCAGTTGATGTATAAAC 41511 ||| ||||| || ||||| || |||||||| ||||| | ||| | | |||||| ||| Sbjct 1394 AAGGTAACCGTGTCCGTCACCTAGATTACGGCGTACAAATCAACAAACTCATGTATCAAC 1453 Query 41512 G 41512 | Sbjct 1454 G 1454 Score = 104 bits (114), Expect = 3e-17 Identities = 217/318 (68%), Gaps = 14/318 (4%) Strand=Plus/Plus Query 42843 GTTGCACGTTATGAATCGCAGAAACACAAAGTTTTCGAAAGCCTGACGCAAAAACAACTT 42902 ||||| || ||||| || ||| | || |||| |||| |||| |||| ||||| Sbjct 2861 GTTGCGCGCTATGACCAACAAAAATATGAAATTTTTGAAAAACTGATTGAAAAGCAACTC 2920 Query 42903 TCTTTCTTCTGGCGTCCGGAAGAAGTCGATCTGTCTACTGACCGTATGCAGTATGCAAAA 42962 || ||||| ||||| || |||||||||||| | || || || || | | | |||| Sbjct 2921 TCCTTCTTTTGGCGCCCTGAAGAAGTCGATGTCTCACGCGATCGGATCGATTTTCAAAAA 2980 Query 42963 CTTCCTGAACATGAA---AAAATCATTTTCGATTCTAACCTACAGTATCAAACCCTGTTA 43019 ||||||||||| ||| | ||| |||| |||| || | |||||||| || || Sbjct 2981 CTTCCTGAACACGAACGTCATATCTTTTT---AAGTAACTTAAAATATCAAACGCTATTG 3037 Query 43020 GATACCATTCAGGGACGTGGGCCTAACCTCGCATTTTT---GCCAAT-TGCATCCGATGT 43075 ||| | || || || || | || ||| | || | || || ||| | ||| | | Sbjct 3038 GATTCTATCCAAGGGCGCAGTCCGAACGTTGCGCTGTTACCGCTAATCTCCATTC---CT 3094 Query 43076 GAGCATGGAAACCTGGATCGAAACGTGGGCGTTTAGTGAAACCATCCACAGCCGTAGTTA 43135 || | ||||||| ||| | ||||| |||||||| ||||| |||||| ||| ||| Sbjct 3095 GAAC-TGGAAACATGGGTTGAAACCTGGGCGTTCTCCGAAACGATCCACTCACGTTCTTA 3153 Query 43136 CACGCATATTCAACGTAA 43153 ||| |||||| ||||| Sbjct 3154 CACTCATATTATTCGTAA 3171 >seq222524 Length=8439 Score = 129 bits (142), Expect = 7e-25 Identities = 140/186 (75%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 51218 GTGGAAGGTGGACAGCATTTAAACGTAAACGTGTTGCGCCGCGAAACTCTCCTGGATGCG 51277 ||||| || || |||||| | ||||| ||||| || |||| ||||| || || ||| Sbjct 4210 GTGGAGGGCGGTCAGCATCTGAACGTCAACGTCCTGAGCCGTGAAACGCTGGAAGAGGCG 4151 Query 51278 GTTGAACATCCTGAAAAATACCCACAGTTAACGATCCGTGTTTCTGGTTATGCAGTGCGT 51337 || | || || || ||||| || ||| | || || || ||||| |||||||| |||||| Sbjct 4150 GTGAAGCACCCGGAGAAATATCCGCAGCTGACCATTCGCGTTTCCGGTTATGCCGTGCGT 4091 Query 51338 TTTAACTCACTGACCCCTGAACAGCAACGCGACGTTATCGCCCGAACCTTTACAGAGAGT 51397 |||||||| |||| || |||||||| || ||||| || | || |||||||| || || Sbjct 4090 TTTAACTCTTTGACGCCAGAACAGCAGCGTGACGTGATTACGCGTACCTTTACTGAAAGC 4031 Query 51398 CTATAA 51403 || ||| Sbjct 4030 CTTTAA 4025 >seq209331 Length=9407 Score = 113 bits (124), Expect = 5e-20 Identities = 127/170 (75%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 51221 GAAGGTGGACAGCATTTAAACGTAAACGTGTTGCGCCGCGAAACTCTCCTGGATGCGGTT 51280 ||||| || ||||| | ||||| ||||| || ||| |||| || ||||| ||| | Sbjct 485 GAAGGCGGTCAGCACCTCAACGTTAACGTTATGAACCGTGAAATGCTGCTGGACGCGATG 426 Query 51281 GAACATCCTGAAAAATACCCACAGTTAACGATCCGTGTTTCTGGTTATGCAGTGCGTTTT 51340 |||||||| || ||||| || ||| | || || || ||||| ||||| || || || ||| Sbjct 425 GAACATCCAGAGAAATATCCGCAGCTGACCATTCGCGTTTCCGGTTACGCGGTCCGCTTT 366 Query 51341 AACTCACTGACCCCTGAACAGCAACGCGACGTTATCGCCCGAACCTTTAC 51390 ||||||||||| |||||||| | || || || |||||||||| || Sbjct 365 AACTCACTGACTAAAGAACAGCAGCAGGATGTGATTACCCGAACCTTCAC 316 >seq494847 Length=1062 Score = 102 bits (112), Expect = 9e-17 Identities = 201/295 (68%), Gaps = 2/295 (1%) Strand=Plus/Minus Query 39960 GACCAGAT-AGCAAAAGTCATTGAACAACTGAAATCAACCCCAGACGATCGCGGGATCAT 40018 |||||| | ||||| || | ||||| |||||| ||| ||| ||| | ||||| Sbjct 436 GACCAGCTGAGCAAG-GTGGTCGAACAGCTGAAAAGCGACCCGGACTCGCGCCGCATCAT 378 Query 40019 CGTTTCTGCCTGGAACCCTGTTGATCTTGATGATATGGCATTGCGTCCGTGTCACTGTTT 40078 ||||||||| |||||| | || || ||||| ||||| || ||||| ||| || Sbjct 377 CGTTTCTGCATGGAACGTCGGCGAACTGGATGAGATGGCGCTGGCCCCGTGCCACGCGTT 318 Query 40079 CTTTCAGTTCGTTGTAATCAACGGTAAACTGTCTCTACAGTGGTATCAGCGTTCAGTTGA 40138 ||| |||||| || |||| || || || || ||||||||| || || Sbjct 317 CTTCCAGTTCTACGTTGCGGACGGCAAGCTCTCCTGCCAACTGTATCAGCGCTCCTGCGA 258 Query 40139 TGTCTTCTTAGGGTTGCCGTTCAATATCGCCTCCTATGCTCTCCTGACGCATATTATCGC 40198 | ||||| | || ||||||||||||||||| ||| ||| | ||| |||||| || || Sbjct 257 TATCTTCCTCGGCCTGCCGTTCAATATCGCCAGCTACGCTTTGCTGGTGCATATGATGGC 198 Query 40199 TGATATTTGCGGGTACGAAGTGGGCGATCTGGTTTGGACTGGTGGTGATGTCCAT 40253 | |||| |||||||| ||| | || ||||| ||||| ||| |||| Sbjct 197 CCAGCAGTGCGACCTGGAAGTGGGTGATTTTGTCTGGACCGGTGGCGATACCCAT 143 >seq498467 Length=2746 Score = 89.7 bits (98), Expect = 6e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 153061 TCCCGACTAAACGCGATCTTCTGGCTGGTATCGTTTCTAAACATATGGCGCGTAACCATA 153120 |||| ||| | |||||||| ||||| || ||||| | ||||| || ||| | |||| Sbjct 2025 TCCCCACTCAGCGCGATCTGCTGGCCGGGATCGTCGCCAAACACTACGCCCGTCAGCATA 1966 Query 153121 TTCTACCGAAACATATTGTTGCGGCGCATGATTCCGGTGATATTCATTATCACGATCTGG 153180 | || ||| || | || || ||||| ||| || || || ||||||||||| | Sbjct 1965 TGCTGCCGCGTGATGTGGTCAGCGCCCATGAGCGCGGCGAGATCCACTATCACGATCTCG 1906 Query 153181 ATTAC-AGCCCTTTCACCCCATACACTAACTGCTGTCTTGTTGACCTGAAAGGCATGTTA 153239 | ||| ||| ||| ||| || ||||||| || | |||||| |||||| | Sbjct 1905 ACTACTCGCCGTTTTTCCCGAT-GTTTAACTGCATGCTGATCGACCTGCGGGGCATGCTG 1847 Query 153240 GAAAACGGGTTCCGTATGGGTAACGCTGATATCGAACCGCCTAAATCAATC 153290 |||| ||| ||||||||||| || |||||||||||||| || ||| Sbjct 1846 ACGCACGGCTTCAAAATGGGTAACGCCGAGATCGAACCGCCTAAGTCGATC 1796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 554584714179360