Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_014260.1 Length=172253 Score E Sequences producing significant alignments: (Bits) Value seq1462 163 3e-35 seq65234 150 2e-31 seq260686 138 1e-27 >seq1462 Length=4781 Score = 163 bits (180), Expect = 3e-35 Identities = 294/427 (69%), Gaps = 2/427 (0%) Strand=Plus/Minus Query 144930 CCGTAGTCCATATGTCGAATACGGTTTTCATCAACGCCCTTGTTATTTTTCAGAACGAGC 144989 ||||| || | || || | |||||| | ||||| || |||||||||||| || | Sbjct 1424 CCGTAATCTAGGTGACGGACACGGTTACCTTCAACACCACGGTTATTTTTCAGGACTAAT 1365 Query 144990 AGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCACGGATT 145049 | |||||| |||||| ||||| ||||| ||| | || || || || || || | Sbjct 1364 AAGCTTTCAATTTCCAAGTGCCACATAGGGTAAAACAGTGTCGCGGCACCCCCGCGTACG 1305 Query 145050 CCACCTTGTGAACATGATTTAACAGCAGTCTGGAAATGTTTCCAGAATGGAATAACACCG 145109 || ||||| || || ||||| || || |||||||| ||||| |||| || ||| |||| Sbjct 1304 CCGCCTTGCGAGCAAGATTTCACGGCCGTCTGGAAGTGTTTGTAGAACGGGATACAACCG 1245 Query 145110 GTATGTTTGACTTCACCCATGCCAATACGAGAACCTTCAGCACGAATCATACCAACGTTG 145169 ||||| ||||||| | || | ||| |||||||| ||| | ||| Sbjct 1244 GTATGGAAAGCTTCACCACCACGGATTGGGCTGCCTAGCGCACGAATACGGCCAGCATTG 1185 Query 145170 ATACCAATACCTGCACGTTTAGAAATGTATTCAATTATCGAGTTAGCAGTTTTGTTAATA 145229 ||||| || ||||| |||| |||| ||||| || || | ||| ||| ||| ||| Sbjct 1184 ATACCGATCCCTGCGCGTTGTGAAACGTATTTAACGATAGCACTAGAAGTGGCGTTGATA 1125 Query 145230 GA-TTTCAGCGAGTCGCCTGCTTCAATAACCACACAAGAACTAAATTGGCGAGTCGGTGT 145288 || | | ||| | ||||| || |||| ||| || || || |||||||||||||| || Sbjct 1124 GAGTCTAAGCTA-TCGCCACACTCGATAAGCACGCATGAGCTGAATTGGCGAGTCGGCGT 1066 Query 145289 ACGCGCTCCAGCCATAATAGGGGTAGGCAACGAAACCTGACGAGTACTTACAGCATCATA 145348 || | |||||||| || || ||||| || |||| | | || || |||||||| Sbjct 1065 CCGTACCCCAGCCATGATTGGCGTAGGTAAGGAAATTTTAAAGGTCGACACGGCATCATA 1006 Query 145349 AAAACGA 145355 ||| ||| Sbjct 1005 AAAGCGA 999 >seq65234 Length=1614 Score = 150 bits (166), Expect = 2e-31 Identities = 253/365 (69%), Gaps = 6/365 (2%) Strand=Plus/Plus Query 144954 TTTTCATCAACGCCCTTGTTATTTTTCAGAACGAGCAGATTTTCAACTTCCAAATGCCAA 145013 ||||| |||| || | |||||||| | ||| | | |||||||| ||| | |||||| Sbjct 695 TTTTCTTCAATTCCTCTATTATTTTTTAAAACTAATAAATTTTCAATTTCTAGATGCCAT 754 Query 145014 ATAGGATAATAAGCAGTAGCAGCGCCGCCACGGATTCCACCTTGTGAACATGATTTAACA 145073 || || ||| || |||| || || || || | | ||||||||| ||||| ||||| || Sbjct 755 ATTGGGTAAAAAACAGTTGCGGCCCCTCCTCTAACTCCACCTTGAGAACAAGATTTTACT 814 Query 145074 GCAGTCTGGAAATGTTTCCAGAATGGAATAACACCGGTATGTTTGACTTCACCCATGCCA 145133 || | ||||| ||||| | || |||||| |||||||| |||| || | | Sbjct 815 GCGCTTTGGAAGTGTTTATAAAAAGGAATACATCCGGTATGAAATGCTTCTCCATTTCTG 874 Query 145134 ATACGAGAACCTTCAGCACGAATCATACCAACGTTGATACCAATACCTGCACGTTTAGAA 145193 ||| || ||| ||| ||||| |||| |||| || || || ||||| |||| |||| Sbjct 875 ATAGGACTTCCTAAAGCTCGAATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGAGAA 934 Query 145194 ATGTATTCAATTATCGAGTTAGCAGTTTTGTTAATAGATTTCAGCGAGTCGCCTGC---T 145250 | |||| | || | ||| || |||||||| || | | | |||| | Sbjct 935 ACATATTTTACAATTGCACTAGTTGTAGCATTAATAGAGTTTA---AATTATCTGCACAT 991 Query 145251 TCAATAACCACACAAGAACTAAATTGGCGAGTCGGTGTACGCGCTCCAGCCATAATAGGG 145310 ||||| | |||||||||||||||||| ||||| ||||| | |||| | |||||| || Sbjct 992 TCAATTAACACACAAGAACTAAATTGACGAGTTGGTGTTCTTACTCCTGACATAATCGGT 1051 Query 145311 GTAGG 145315 || || Sbjct 1052 GTGGG 1056 >seq260686 Length=13603 Score = 138 bits (152), Expect = 1e-27 Identities = 282/419 (67%), Gaps = 0/419 (0%) Strand=Plus/Minus Query 144908 CATCAGGTCATTCAACTGGATTCCGTAGTCCATATGTCGAATACGGTTTTCATCAACGCC 144967 |||||| | |||| ||| | |||||||||||||| || | ||||| | |||||||| Sbjct 5594 CATCAGCTTGTTCAGCTGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCC 5535 Query 144968 CTTGTTATTTTTCAGAACGAGCAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 145027 ||| || ||||| || ||||| |||| ||||||| |||||| || || || | Sbjct 5534 GCGGTTGTTCTTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAG 5475 Query 145028 AGTAGCAGCGCCGCCACGGATTCCACCTTGTGAACATGATTTAACAGCAGTCTGGAAATG 145087 || || || ||||| || | || || || || || || || || || |||||||| || Sbjct 5474 GGTCGCTGCACCGCCGCGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTG 5415 Query 145088 TTTCCAGAATGGAATAACACCGGTATGTTTGACTTCACCCATGCCAATACGAGAACCTTC 145147 || |||| ||||| ||||| || ||||||| || || | || Sbjct 5414 CTTATAGAACGGAATGCAGCCGGTGTGGAATGCTTCACCGCCGCGGATCGGGCTGCCCAG 5355 Query 145148 AGCACGAATCATACCAACGTTGATACCAATACCTGCACGTTTAGAAATGTATTCAATTAT 145207 ||||| || ||| |||| || || ||||| ||||| | ||||| ||| | | || Sbjct 5354 CGCACGGATGCGACCGGCGTTAATGCCGATACCGGCACGCTGAGAAACGTACTTCACAAT 5295 Query 145208 CGAGTTAGCAGTTTTGTTAATAGATTTCAGCGAGTCGCCTGCTTCAATAACCACACAAGA 145267 || | | | || |||||| || | || |||||| ||||| | || || || Sbjct 5294 CGCGCTGGAGGTGGCGTTAATGGAATCAAGGCTGTCGCCGCACTCAATCAGTACGCAGGA 5235 Query 145268 ACTAAATTGGCGAGTCGGTGTACGCGCTCCAGCCATAATAGGGGTAGGCAACGAAACCT 145326 || || ||||| ||||| || ||| | || | |||||| || || |||| ||||| || Sbjct 5234 GCTGAACTGGCGCGTCGGGGTGCGCACGCCGGACATAATTGGCGTCGGCAGCGAAATCT 5176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547642706157080