Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_014595.1 Length=170605 Score E Sequences producing significant alignments: (Bits) Value seq1462 141 1e-28 seq260686 129 6e-25 seq65234 118 1e-21 >seq1462 Length=4781 Score = 141 bits (156), Expect = 1e-28 Identities = 312/463 (67%), Gaps = 6/463 (1%) Strand=Plus/Minus Query 142911 CCAGACGTTCCATCATCAGGTTATTCAGCTGGACACCATAGTCCATATGTCTGATGCGGT 142970 ||||||||| ||| || || || | || || || || || | || | || |||| Sbjct 1459 CCAGACGTTGATACATGAGTTTGTTGATTTGTACGCCGTAATCTAGGTGACGGACACGGT 1400 Query 142971 TTTCTTCAACGCCCTTGTTGTTCTTCAGAACGAGTAAATTTTCAACTTCCAAATGCCAAA 143030 | ||||||| || ||| || ||||| || | ||| |||||| |||||| ||||| | Sbjct 1399 TACCTTCAACACCACGGTTATTTTTCAGGACTAATAAGCTTTCAATTTCCAAGTGCCACA 1340 Query 143031 TAGGATAATAAGCAGTAGCAGCGCCGCCACGGATTCCACCTTGTGAACATGATTTAACAG 143090 |||| ||| | || || || || || || | || ||||| || || ||||| || | Sbjct 1339 TAGGGTAAAACAGTGTCGCGGCACCCCCGCGTACGCCGCCTTGCGAGCAAGATTTCACGG 1280 Query 143091 CCGTTTGGAAATGTTTCCAGAACGGAATAACACCAGTATGCTTAACTTCGCCCATACCGA 143150 |||| ||||| ||||| ||||||| ||| ||| ||||| | |||| || || || Sbjct 1279 CCGTCTGGAAGTGTTTGTAGAACGGGATACAACCGGTATGGAAAGCTTCACCACCACGGA 1220 Query 143151 TTTTCGAACCTTCGGCACGAATCATGCCAACGTTGATACCGATACCTGCACGCTTACTGA 143210 || ||| |||||||| |||| | ||||||||||| ||||| || | ||| Sbjct 1219 TTGGGCTGCCTAGCGCACGAATACGGCCAGCATTGATACCGATCCCTGCGCGTTG--TGA 1162 Query 143211 TA--TATTCGATGATTGAATTAGCAGTCTTATTAATTGACTTCAGGGAGTCAGCCGCT-T 143267 | |||| | ||| | | ||| ||| || || || | | | || ||| | | Sbjct 1161 AACGTATTTAACGATAGCACTAGAAGTGGCGTTGATAGAGTCTAAGCTATC-GCCACACT 1103 Query 143268 CGATAACCACGCAGGAACTGAACTGTCTGGTAGGTGTTCTGGCGCCGGCCATGATAGGCG 143327 |||||| |||||| || ||||| || | || || || | | || |||||||| |||| Sbjct 1102 CGATAAGCACGCATGAGCTGAATTGGCGAGTCGGCGTCCGTACCCCAGCCATGATTGGCG 1043 Query 143328 TGGGCAACGAAACCTGTCGAGTGGATACTGCATCATAAAAACG 143370 | || || |||| | || || || ||||||||||| || Sbjct 1042 TAGGTAAGGAAATTTTAAAGGTCGACACGGCATCATAAAAGCG 1000 >seq260686 Length=13603 Score = 129 bits (142), Expect = 6e-25 Identities = 331/499 (66%), Gaps = 14/499 (3%) Strand=Plus/Minus Query 142879 CGGACTAAACAGAGTGATGTAATCATTCTTAGCCAGACGTTCCATCATCAGGTTATTCAG 142938 ||| || |||||||| || | ||| ||| ||| || | |||||| || ||||| Sbjct 5639 CGGGCTGAACAGAGTAATCTCTTCACCCTTCAGCAGGCGCTGATACATCAGCTTGTTCAG 5580 Query 142939 CTGGACACCATAGTCCATATGTCTGATGCGGTTTTCTTCAACGCCCTTGTTGTTCTTCAG 142998 ||| || || ||||||||||| | | |||||| |||||||||| |||||||||||| Sbjct 5579 CTGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCCGCGGTTGTTCTTCAG 5520 Query 142999 AACGAGTAAATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCC 143058 || || | |||| ||||||| |||||| || || || | || || || ||||| Sbjct 5519 CACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAGGGTCGCTGCACCGCC 5460 Query 143059 ACGGATTCCACCTTGTGAACATGATTTAACAGCCGTTTGGAAATGTTTCCAGAACGGAAT 143118 || | || || || || || || || || || || ||||| || || |||||||||| Sbjct 5459 GCGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTGCTTATAGAACGGAAT 5400 Query 143119 AACACCAGT-----ATGCTTAACTTCGCC-CATACCGATTTTCGAACCTTCGGCACGAAT 143172 || || |||||| || |||| | | || | | | | ||||| || Sbjct 5399 GCAGCCGGTGTGGAATGCTTCAC--CGCCGCGGATCGGGCTGCCCAGC----GCACGGAT 5346 Query 143173 CATGCCAACGTTGATACCGATACCTGCACGCTTACTGATATATTCGATGATTGAATTAGC 143232 || |||| || |||||||| ||||||| | | || | | || | | | Sbjct 5345 GCGACCGGCGTTAATGCCGATACCGGCACGCTGAGAAACGTACTTCACAATCGCGCTGGA 5286 Query 143233 AGTCTTATTAATTGACTTCAGGGAGTCAGCCGC-TTCGATAACCACGCAGGAACTGAACT 143291 || ||||| || | ||| ||| ||||| || || | |||||||| ||||||| Sbjct 5285 GGTGGCGTTAATGGAATCAAGGCTGTC-GCCGCACTCAATCAGTACGCAGGAGCTGAACT 5227 Query 143292 GTCTGGTAGGTGTTCTGGCGCCGGCCATGATAGGCGTGGGCAACGAAACCTGTCGAGTGG 143351 | | || || || | |||||| ||| || ||||| |||| ||||| || |||| Sbjct 5226 GGCGCGTCGGGGTGCGCACGCCGGACATAATTGGCGTCGGCAGCGAAATCTTAAAGGTGG 5167 Query 143352 ATACTGCATCATAAAAACG 143370 | | ||||| || ||||| Sbjct 5166 AGATCGCATCGTAGAAACG 5148 >seq65234 Length=1614 Score = 118 bits (130), Expect = 1e-21 Identities = 290/440 (66%), Gaps = 0/440 (0%) Strand=Plus/Plus Query 142931 TTATTCAGCTGGACACCATAGTCCATATGTCTGATGCGGTTTTCTTCAACGCCCTTGTTG 142990 ||||| | || ||| |||| || | ||| | | | |||||||||| || | || Sbjct 656 TTATTAATTTGTACAGCATAATCAAGATGACGTACTCTATTTTCTTCAATTCCTCTATTA 715 Query 142991 TTCTTCAGAACGAGTAAATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCA 143050 || || | ||| | ||||||||||| ||| | |||||| || || ||| || |||| || Sbjct 716 TTTTTTAAAACTAATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAAACAGTTGCG 775 Query 143051 GCGCCGCCACGGATTCCACCTTGTGAACATGATTTAACAGCCGTTTGGAAATGTTTCCAG 143110 || || || | | ||||||||| ||||| ||||| || || ||||||| ||||| | Sbjct 776 GCCCCTCCTCTAACTCCACCTTGAGAACAAGATTTTACTGCGCTTTGGAAGTGTTTATAA 835 Query 143111 AACGGAATAACACCAGTATGCTTAACTTCGCCCATACCGATTTTCGAACCTTCGGCACGA 143170 || |||||| || ||||| |||| || | | ||| ||| || ||| Sbjct 836 AAAGGAATACATCCGGTATGAAATGCTTCTCCATTTCTGATAGGACTTCCTAAAGCTCGA 895 Query 143171 ATCATGCCAACGTTGATACCGATACCTGCACGCTTACTGATATATTCGATGATTGAATTA 143230 || ||| |||| || || || ||||| || | | | ||||| | |||| | || Sbjct 896 ATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTACAATTGCACTA 955 Query 143231 GCAGTCTTATTAATTGACTTCAGGGAGTCAGCCGCTTCGATAACCACGCAGGAACTGAAC 143290 | || |||||| || || | || || ||| || | ||| || ||||| || Sbjct 956 GTTGTAGCATTAATAGAGTTTAAATTATCTGCACATTCAATTAACACACAAGAACTAAAT 1015 Query 143291 TGTCTGGTAGGTGTTCTGGCGCCGGCCATGATAGGCGTGGGCAACGAAACCTGTCGAGTG 143350 || | || |||||||| | || | ||| || || ||||| | || | | |||| Sbjct 1016 TGACGAGTTGGTGTTCTTACTCCTGACATAATCGGTGTGGGTAGAGATATTTTAAAAGTG 1075 Query 143351 GATACTGCATCATAAAAACG 143370 || | ||||| |||||| || Sbjct 1076 GAAATTGCATTATAAAAGCG 1095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542402014805400