Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_014636.1 Length=225268 Score E Sequences producing significant alignments: (Bits) Value seq260686 179 5e-40 seq498467 134 2e-26 seq15764 114 2e-20 seq234545 86.0 9e-12 >seq260686 Length=13603 Score = 179 bits (198), Expect = 5e-40 Identities = 292/417 (70%), Gaps = 10/417 (2%) Strand=Plus/Minus Query 129056 ACATCAGCTTATTGATTTGGATACCGTAGTCAAGATGTCGGATTCGGTTTTCTTCAACGC 129115 |||||||||| || | || | |||||||| | ||| || | ||||| ||||||||| Sbjct 5595 ACATCAGCTTGTTCAGCTGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGC 5536 Query 129116 CCTTGTTATTCTTGAGCACAAGGATTTTTTCAACTTCGAGGTGCCACATTGGGTAATATA 129175 | ||| ||||| ||||| || | |||| ||||| || |||||||||||||| | | Sbjct 5535 CGCGGTTGTTCTTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACA 5476 Query 129176 GAGTTGCGGCACCGCCGCGAACACCACCCTGTGAACAGCTCTTTACCGCAGTCTGGAAGT 129235 | || || ||||||||||| || || ||||| || ||| ||| ||||| |||||||||| Sbjct 5475 GGGTCGCTGCACCGCCGCGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGT 5416 Query 129236 ATTTCCAAAATGGGATAATACCGGTATGTCGCACTTCACCGCTACGAATGCGAGATCCCT 129295 || | || || || ||||| || ||||||||| || || || | | || Sbjct 5415 GCTTATAGAACGGAATGCAGCCGGTGTGGAATGCTTCACCGCCGCGGAT-CGGGCTGCCC 5357 Query 129296 CG-GCACGAATCGCACCGCCGTTGATGCCGATACCAGCGCGTTTGCTGATA----TAGTC 129350 | ||||| || |||| |||| ||||||||||| || | ||||| | || | Sbjct 5356 AGCGCACGGATGCGACCGGCGTTAATGCCGATACCGGCAC----GCTGAGAAACGTACTT 5301 Query 129351 AACGATAGAACTAGCGGTAGCGTTGATGCTATCCAGTTCGTCTCCACATTCGATCTTGAC 129410 || || | || | ||| ||||| ||| ||| || ||| || || || ||| || Sbjct 5300 CACAATCGCGCTGGAGGTGGCGTTAATGGAATCAAGGCTGTCGCCGCACTCAATCAGTAC 5241 Query 129411 ACAAGAGCTAAACTGCCGAGTCGGGGTGCGAACACCTGCGAGAATCGGAGTTGGCAG 129467 || ||||| ||||| || ||||||||||| || || | | ||| || || ||||| Sbjct 5240 GCAGGAGCTGAACTGGCGCGTCGGGGTGCGCACGCCGGACATAATTGGCGTCGGCAG 5184 Score = 140 bits (154), Expect = 5e-28 Identities = 226/314 (72%), Gaps = 12/314 (4%) Strand=Plus/Minus Query 126918 CTCAACAGATCACGCGCCCATTCTTTTTCTTGTTCGGCAGCGTCCA-GAAAA-ATCTGAA 126975 || ||||||| |||||| ||||| || || |||||||| || ||| | ||| | Sbjct 7820 CTGAACAGATATTCCGCCCACTCTTTCTCCTGCTCGGCAGCCAGCACGAACAGATCGTAG 7761 Query 126976 CAGCCTTTGACTCAAGACGTTTAGCAATATCAACCATTTCTGGGTCATCTTCGCCGTTTT 127035 || ||| ||| | | ||||||||| || ||||||| || || ||||| || | Sbjct 7760 CACTCTT-GACGGCACTC-TTTAGCAATCTCGGCCATTTCCGGATCGTCTTCCCCACTGC 7703 Query 127036 GC--CAAGTGC-GAATTTGATACTGGGTGCCTTTGAGGTGCAATTGTTCATCACGCGCAA 127092 || || || | | || || ||| ||||| | ||||||| |||||| || || | Sbjct 7702 GCAGCAGGTTCAGCATATG---CTGAGTGCCGGTCAGGTGCAGAGCTTCATCGCGGGCGA 7646 Query 127093 TCAGTTTCATGATCTTAGCGTTGCCTTCCATCAAACCGCGTTCGGCAAACGAGAAGGTGC 127152 |||| || ||||| || || ||||||||||||| |||| |||||||| | ||| | || Sbjct 7645 TCAGCTTAATGATTTTGGCATTGCCTTCCATCAGTTCGCGCTCGGCAAAGGCGAAAGAGC 7586 Query 127153 AGGCGAAGCTTACATAAAAACGAATCGCTTCCAAAGCGTTTACCGCGTGTTTGGCGAGAT 127212 |||||||||| || ||||| || |||||||||| ||||| | ||| | ||| |||| Sbjct 7585 AGGCGAAGCTGACGTAAAAGCGGATCGCTTCCAGCGCGTTGA-CGCTCATCAGGC-AGAT 7528 Query 127213 ACAGAGCTTCTTTT 127226 | |||||| ||||| Sbjct 7527 ATAGAGCTGCTTTT 7514 >seq498467 Length=2746 Score = 134 bits (148), Expect = 2e-26 Identities = 160/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 124645 CTTCGTCAATGCGATTAATTGTGTTGCCACCATAAATGTGACTTGCAACCTGTGCAATGA 124704 |||| ||||| || ||||| ||| |||| || ||||| || || || ||||| || |||| Sbjct 1708 CTTCATCAATACGGTTAATGGTGGTGCCCCCGTAAATATGGCTGGCGACCTGGGCGATGA 1767 Query 124705 TTTGAGCAGTAACAGCCGCAGCGGTAGCGATGCTCTTAGGAGTTTCGATCTGTGCATTAC 124764 | || || || || || | ||||| | ||| |||||| | |||||||| || |||| Sbjct 1768 TCTGCGCGGTGACGGCGGTGGCGGTGGAGATCGACTTAGGCGGTTCGATCTCGGCGTTAC 1827 Query 124765 CCATGCGGAACCCACGCTCTAACATGCCGTTGAGATCAATCAACATGCAGTTAAACATTG 124824 |||| ||| || || | |||||| || || |||| ||||||||||||||| | Sbjct 1828 CCATTTTGAAGCCGTGCGTCAGCATGCCCCGCAGGTCGATCAGCATGCAGTTAAACATCG 1887 Query 124825 GGAAGAACGGAGAGTAATCAAGATCATGGAAGTGAAT 124861 |||| ||||| ||||| || ||||| || |||| || Sbjct 1888 GGAAAAACGGCGAGTAGTCGAGATCGTGATAGTGGAT 1924 >seq15764 Length=1899 Score = 114 bits (126), Expect = 2e-20 Identities = 129/170 (76%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 127055 CTGGGTGCCTTTGAGGTGCAATTGTTCATCACGCGCAATCAGTTTCATGATCTTAGCGTT 127114 ||||||||| | ||||||| |||||| || |||||||| || ||||| || || || Sbjct 1287 CTGGGTGCCGGTCAGGTGCAGCGCTTCATCGCGGGCAATCAGCTTGATGATTTTGGCATT 1228 Query 127115 GCCTTCCATCAAACCGCGTTCGGCAAACGAGAAGGTGCAGGCGAAGCTTACATAAAAACG 127174 ||||||||||| | || || || |||| ||| | ||||||||||| ||||| ||||| Sbjct 1227 GCCTTCCATCAGCTCACGCTCAGCGAACGCGAATGAACAGGCGAAGCTGACATAGAAACG 1168 Query 127175 AATCGCTTCCAAAGCGTTTACCGCGTGTTTGGCGAGATACAGAGCTTCTT 127224 |||||||||| || || | ||| | ||| ||||| |||||| ||| Sbjct 1167 GATCGCTTCCAGCGCATTGA-CGCTCATCAGGC-AGATATAGAGCTGCTT 1120 >seq234545 Length=12910 Score = 86.0 bits (94), Expect = 9e-12 Identities = 67/79 (85%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 191313 AAATTGGCGGGGGTAGCTGGACTCGAACCAGCGAATGACGGAATCAAAATCCGTTGCCTT 191372 ||| |||| |||||| ||||| ||||||||| ||||| ||| ||||||| ||| |||||| Sbjct 12020 AAAATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTT 11961 Query 191373 TCCAACTTGGCGATACCCC 191391 || |||||||||||||| Sbjct 11960 ACCG-CTTGGCGATACCCC 11943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716232058104480