Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq174195 147 9e-30 seq158632 125 3e-23 seq73823 120 1e-21 seq152054 107 8e-18 seq217758 95.1 5e-14 seq220352 89.7 2e-12 seq189152 89.7 2e-12 seq236987 84.2 9e-11 seq141692 84.2 9e-11 >seq174195 Length=20443 Score = 147 bits (162), Expect = 9e-30 Identities = 265/379 (70%), Gaps = 10/379 (3%) Strand=Plus/Plus Query 451248 AAGAAATTTCATCTATGGTTCTTACT-AAAATGAAAGAAACAGCAGAACAATATATTGGT 451306 |||||||||| | ||| | ||| | ||||||||| |||| |||||| | || | || Sbjct 9315 AAGAAATTTCTGCGATGAT-CTTGCAGAAAATGAAAAAAACGGCAGAAGATTACTTAGGA 9373 Query 451307 TCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAA 451366 ||| || |||||||||||||| || || || ||||| ||||||||||| ||| Sbjct 9374 CAAGAAGTATCTCGCGCAGTAATTACTGTACCAGCGTACTTCAACGATGCACAACGTCAA 9433 Query 451367 GCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCT 451426 ||||| ||||| || || | |||| ||| | || || || || || || || || Sbjct 9434 GCAACGAAAGAAGCGGGTGAGGTTGCCGGTCTTAAAGTAGAGCGTATCATCAACGAGCCA 9493 Query 451427 ACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATT 451486 || || ||||| |||| || || | ||| |||| || | |||| | || ||| Sbjct 9494 ACCGCTGCTGCATTAGCGTACGG-TTTGGA----CAAAGCCAATA-AAGACATGAAAATT 9547 Query 451487 TTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATT-GAAGATGG 451545 | |||||||| | |||||| || || ||||| |||||| || | || | ||||| Sbjct 9548 GTCGTATTTGACTGTGGTGGTGGTACACATGACGTTTCTGT-TTTAGAGTTAGGTGATGG 9606 Query 451546 GGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 ||||| |||||||| | || |||||||||| || |||| ||||| || ||||||| Sbjct 9607 TGTATTCGAAGTAAAATCTACTGATGGTGATACACACTTAGGTGGTGATGACTTTGATAA 9666 Query 451606 TGCAATTGTGGAATGGTTG 451624 | ||| | | |||||| Sbjct 9667 CGTAATCATCAACTGGTTG 9685 >seq158632 Length=4132 Score = 125 bits (138), Expect = 3e-23 Identities = 192/271 (71%), Gaps = 6/271 (2%) Strand=Plus/Plus Query 451274 AAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACT 451333 ||||||||| |||| |||||| | || | || |||| | || ||||| ||||| Sbjct 3842 AAAATGAAAAAAACTGCAGAAGACTACTTAGGAGAATCAGTGAAAGAAGCAGTTATTACA 3901 Query 451334 GTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCT 451393 |||||||| ||||| |||||||| || | |||||||| |||||||| || ||||| Sbjct 3902 GTTCCCGCCTATTTTAATGATGCTCAGAGACAAGCAACCAAAGATGCTGGTAGAATTGCA 3961 Query 451394 GGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTA 451453 || ||| | || |||||||||| ||||||||||| || || ||||| ||||| || Sbjct 3962 GGATTAGAAGTCAAAAGAATTATTAACGAACCTACAGCTGCAGCACTAGCTTATGGTTTA 4021 Query 451454 GGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACT 451513 | || ||| | | ||| | | || ||| ||||| ||||| ||||| || ||| Sbjct 4022 G----AT-AAAGGGGAGGGAA-ACAGAACTATAGCAGTATACGATTTAGGTGGCGGTACT 4075 Query 451514 CATGATACTTCTGTACTTTCAATTGAAGATG 451544 ||||| ||| | || ||| || |||| Sbjct 4076 TTTGATATATCTATTATTGAAATCGATGATG 4106 >seq73823 Length=2501 Score = 120 bits (132), Expect = 1e-21 Identities = 146/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 451251 AAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTC 451310 |||| ||| || ||||| | |||||||| ||||||| ||| | || | ||| | Sbjct 592 AAATCTCAGCTGAAGTTCTGAAGAAAATGAAGAAAACAGCGGAAGACTACTTGGGTGAGC 651 Query 451311 CAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAA 451370 |||| ||||| || || || ||||| || || || ||||| ||||| ||||| ||||||| Sbjct 652 CAGTGACTGAAGCCGTTATCACTGTACCGGCATACTTCAACGATGCGCAACGTCAAGCAA 711 Query 451371 CTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAG 451430 |||||||||| || | ||| || || ||| | ||| || || || || ||||| || | Sbjct 712 CTAAAGATGCTGGCCGTATCGCAGGGTTAGAAGTTAAGCGTATCATCAACGAACCAACTG 771 Query 451431 CAGCTGCTCTAGCATATGG 451449 | || || || || ||||| Sbjct 772 CCGCAGCGCTGGCGTATGG 790 >seq152054 Length=931 Score = 107 bits (118), Expect = 8e-18 Identities = 199/293 (68%), Gaps = 18/293 (6%) Strand=Plus/Plus Query 451324 AGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGG 451383 ||| ||||| ||||| || ||||| |||||||| || | ||||||||||| ||||| || Sbjct 1 AGTTATTACAGTTCCTGCCTATTTTAATGATGCTCAGAGACAAGCAACTAAGGATGCTGG 60 Query 451384 ACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGC 451443 ||||| || ||| | || |||||||||| ||||||||||| || || || || Sbjct 61 TAGAATTGCAGGATTAGAAGTCAAAAGAATTATTAACGAACCTACAGCTGCAGCGCTTGC 120 Query 451444 ATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGG 451503 ||||| ||| || |||| || | | | || ||| ||||| ||||| || Sbjct 121 TTATGGTTTAG----AT--AAAGGGGAAGGAAATAGAACTATAGCAGTATACGATTTAGG 174 Query 451504 TGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGG------------TATT 451551 |||||| ||| ||||| ||| | || ||| || |||| | ||| Sbjct 175 TGGAGGTACTTTTGATATATCTATTATTGAAATCGATGATGTTGACAAAGAAAAAACATT 234 Query 451552 TGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATA 451604 |||||| || || ||||| || || ||||| || || |||||| | |||| Sbjct 235 TGAAGTTCTTGCTACTAATGGAGACACCCATCTTGGTGGAGAAGATTTCGATA 287 >seq217758 Length=51541 Score = 95.1 bits (104), Expect = 5e-14 Identities = 196/290 (68%), Gaps = 5/290 (2%) Strand=Plus/Minus Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379 |||| || | ||||| || ||||| ||||||||| | || |||| ||||| || |||| Sbjct 26965 ATGCCGTTGTCACTGTGCCTGCTTACTTCAATGATTCCCAGAGGCAGGCAACCAAGGATG 26906 Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439 | || |||||||||| | ||||| | || || || || || || ||||||||||| Sbjct 26905 CTGGTGTTATTGCTGGTCTTAATGTGATGCGTATCATCAACGAGCCAACAGCAGCTGCAA 26846 Query 451440 TAGCATATGGACT----AGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTT 451495 | || ||||| || | ||| | || | | || || || | | | ||| Sbjct 26845 TTGCCTATGGTCTTGACAAGAAGGCTACCAGTGTC-GGTGAGAAGAACGTGCTTATCTTT 26787 Query 451496 GATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAA 451555 || | ||||| || ||| |||| ||| | ||| | ||||| || || | ||||| Sbjct 26786 GACCTCGGTGGTGGCACTTTTGATGTCTCTCTCCTTACCATTGAGGAGGGTATTTTTGAG 26727 Query 451556 GTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 || ||||| || |||||| ||||| || || || || || |||| || Sbjct 26726 GTCAAGGCCACAGCTGGTGACACTCACCTTGGTGGGGAGGACTTTGACAA 26677 >seq220352 Length=119000 Score = 89.7 bits (98), Expect = 2e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 || || || || ||||| ||||| ||||||||||| || ||||| ||||| || ||||| Sbjct 110365 GCTGTGATCACAGTTCCAGCTTACTTCAATGATGCCCAGCGGCAGGCAACCAAGGATGCT 110306 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 || | |||||||| | |||| | |||| || || ||||| || || |||||||| Sbjct 110305 GGTCGAATTGCTGGACTTGATGTCCAAAGAATCATCAACGAACCAACTGCTGCTGCTCTG 110246 Query 451442 GCATATGGA 451450 | |||||| Sbjct 110245 TCTTATGGA 110237 >seq189152 Length=79535 Score = 89.7 bits (98), Expect = 2e-12 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || ||||| || || || || || ||||| ||||| ||||| ||| Sbjct 37317 ATGCAGATCTTTGTCAAAACGCTAACCGGGAAGACCATTACACTTGAGGTTGAGGGCTCT 37258 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | || || || || ||||||||||| || || ||||| || Sbjct 37257 GACACCATTGATAATGTGAAGGCCAAGATCCAGGATAAGGAAGGTATCCCGCCTGACCAG 37198 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | | || || | || || || || || || || | || ||||||||||| ||| Sbjct 37197 CAGAGGCTCATCTTTGCCGGAAAGCAGCTCGAGGACGGGCGTACGTTGGCGGATTACAAT 37138 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | || |||||||| || Sbjct 37137 ATCTAGAAGGAGTCTACTCTTCACTTGGT 37109 >seq236987 Length=98127 Score = 84.2 bits (92), Expect = 9e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 || || ||||| ||||| ||||| ||||||||||| || |||| || || || ||||| Sbjct 67114 GCTGTCATTACCGTTCCAGCTTACTTCAATGATGCTCAGAGGCAGGCCACCAAGGATGCT 67055 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCT 451440 || | ||||||||| | |||| | | || || |||||||| || || |||||||| Sbjct 67054 GGCCGTATTGCTGGGCTTGATGTCCAAAGGATCATCAATGAACCAACTGCTGCTGCTCT 66996 >seq141692 Length=94696 Score = 84.2 bits (92), Expect = 9e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 451265 GTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCA 451324 |||||||| || ||||| ||||| ||||| || |||| | || | | || Sbjct 32789 GTTCTTACCAAGATGAAGGAAACTGCAGAGGCTTACCTTGGCAAGTCGGTCTCCAAGGCT 32848 Query 451325 GTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGA 451384 || ||||| || || ||||||||||||||||| || || || || || || ||||| || Sbjct 32849 GTTATTACAGTCCCAGCTTATTTCAATGATGCTCAGCGTCAGGCCACCAAGGATGCTGGT 32908 Query 451385 CATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCA 451444 |||||||| || | || | | ||||| ||||| || || || || ||||| | Sbjct 32909 AGGATTGCTGGGTTGGAGGTGATGAGGATTATCAATGAGCCCACTGCCGCAGCTCTGTCG 32968 Query 451445 TATGGA 451450 |||||| Sbjct 32969 TATGGA 32974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1963081173521868