Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq217758 122 7e-22 seq234489 118 8e-21 seq158632 113 3e-19 seq152054 113 3e-19 seq293223 104 2e-16 seq287177 104 2e-16 seq205139 93.3 3e-13 seq73823 91.5 1e-12 seq236987 86.0 5e-11 >seq217758 Length=51541 Score = 122 bits (134), Expect = 7e-22 Identities = 305/462 (66%), Gaps = 6/462 (1%) Strand=Plus/Plus Query 517851 AATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 517910 |||||| ||| ||||| | ||||||| || || || ||||| | | ||||| || | Sbjct 26504 AATCAACTCCCTCGAAGAGTGAATCAATCTCGATGGTGGTTTGGGCAGTGGAAGAAAGGG 26563 Query 517911 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCA 517970 | || || | ||||||| ||||| || || | || | | | | | | | Sbjct 26564 TCCTCTTCGCCCTCTCACATGAAGTCCTGAGCCTCCTCAAAGACCTGGGGTTTCCACTGA 26623 Query 517971 AATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAA 518030 ||| | || | || |||||||| |||| ||| | | || | ||| || |||| Sbjct 26624 TATCCTTCTTGTGCTTCCTCTTGAACTCTTGGACAAAGTGGTTCACCATACGGTTGTCAA 26683 Query 518031 AATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTT 518090 | || || || || | | ||| | || | || || | || | |||| || || | Sbjct 26684 AGTCCTCCCCACCAAGGTGAGTGTCACCAGCTGTGGCCTTGACCTCAAAAATACCCTCCT 26743 Query 518091 CAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCA 518150 ||| | | |||| |||||| || |||||||| | ||||| ||||| || ||| Sbjct 26744 CAATGGTAAGGAGAGAGACATCAAAAGTGCCACCACCGAGGTCAAAGATAAGCACGTTCT 26803 Query 518151 TTTCTTTGTCT-TGGT-----TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTT 518204 | || | | |||| | || ||||||||||| |||| ||||| || ||||| | Sbjct 26804 TCTCACCGACACTGGTAGCCTTCTTGTCAAGACCATAGGCAATTGCAGCTGCTGTTGGCT 26863 Query 518205 CATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTC 518264 | || || || | || ||||||||||||||||| || ||||| || || || || | Sbjct 26864 CGTTGATGATACGCATCACATTAAGACCAGCAATAACACCAGCATCCTTGGTTGCCTGCC 26923 Query 518265 TTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 | || ||||| || || || ||||| ||||| | |||||||| Sbjct 26924 TCTGGGAATCATTGAAGTAAGCAGGCACAGTGACAACGGCAT 26965 >seq234489 Length=93356 Score = 118 bits (130), Expect = 8e-21 Identities = 150/205 (73%), Gaps = 6/205 (3%) Strand=Plus/Minus Query 518108 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCT----TG 518163 |||||| ||| |||||||| | ||||| || || |||||| | || | || Sbjct 49795 ACATCAAAGGTGCCACCACCAAGGTCAAAGATGAGAACATTCTTCTCACCAACACTGGTG 49736 Query 518164 G--TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAA 518221 | || || ||||||||||| |||| ||||||||||||||| || || ||||| | || | Sbjct 49735 GCCTTCTTGTCAAGACCATAAGCAATAGCAGCAGCAGTTGGCTCGTTGATAATGCGCATA 49676 Query 518222 ACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAA 518281 ||||| || || ||||| ||| ||||| || ||||| || || || || || || || Sbjct 49675 ACATTCAGGCCTGCAATCACTCCAGCATCCTTGGTGGCCTGCCTCTGAGAGTCATTGAAG 49616 Query 518282 TATGCAGGAACAGTAATAACGGCAT 518306 || ||||| ||||| | ||| |||| Sbjct 49615 TAGGCAGGGACAGTGACAACAGCAT 49591 >seq158632 Length=4132 Score = 113 bits (124), Expect = 3e-19 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 518167 TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATT 518226 |||||| | |||||| || | || ||||| || ||||| ||||||||||| || | Sbjct 4027 TTTATCTAAACCATAAGCTAGTGCTGCAGCTGTAGGTTCGTTAATAATTCTTTTGACTTC 3968 Query 518227 AAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 518286 | || |||||||| || |||||||| || |||||||| || | ||| |||||||| || Sbjct 3967 TAATCCTGCAATTCTACCAGCATCTTTGGTTGCTTGTCTCTGAGCATCATTAAAATAGGC 3908 Query 518287 AGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTT 518346 ||||| |||||||| || || | ||| || || | || | ||| |||| ||| Sbjct 3907 GGGAACTGTAATAACTGCTTCTTTCACTGATTCTCCTAAGTAGTCTTCTGCAGTTTTTTT 3848 Query 518347 CATTTTACTTAAAATCATTGATGAAATTTG 518376 |||||| |||| | || |||||||| Sbjct 3847 CATTTTTTTTAACACTTCTGCAGAAATTTG 3818 Score = 109 bits (120), Expect = 4e-18 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 322239 CTAAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAAC 322298 ||||||| || || || ||||| || || ||||| ||||| ||| | || ||||| | Sbjct 4022 CTAAACCATAAGCTAGTGCTGCAGCTGTAGGTTCGTTAATAATTCTTTTGACTTCTAATC 3963 Query 322299 CCGCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTA 322358 | |||||| || ||| ||| |||||||||||||| || ||||||||||| || || | Sbjct 3962 CTGCAATTCTACCAGCATCTTTGGTTGCTTGTCTCTGAGCATCATTAAAATAGGCGGGAA 3903 Query 322359 CAGTAATAACTGCTT 322373 | ||||||||||||| Sbjct 3902 CTGTAATAACTGCTT 3888 >seq152054 Length=931 Score = 113 bits (124), Expect = 3e-19 Identities = 106/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 518167 TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATT 518226 |||||| | |||||| |||| || ||||| || ||||| ||||||||||| || | Sbjct 136 TTTATCTAAACCATAAGCAAGCGCTGCAGCTGTAGGTTCGTTAATAATTCTTTTGACTTC 77 Query 518227 AAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 518286 | || |||||||| || ||||| ||||| |||||||| || | ||| |||||||| || Sbjct 76 TAATCCTGCAATTCTACCAGCATCCTTAGTTGCTTGTCTCTGAGCATCATTAAAATAGGC 17 Query 518287 AGGAACAGTAATAAC 518301 |||||| |||||||| Sbjct 16 AGGAACTGTAATAAC 2 Score = 111 bits (122), Expect = 1e-18 Identities = 103/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 322239 CTAAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAAC 322298 ||||||| || ||||| ||||| || || ||||| ||||| ||| | || ||||| | Sbjct 131 CTAAACCATAAGCAAGCGCTGCAGCTGTAGGTTCGTTAATAATTCTTTTGACTTCTAATC 72 Query 322299 CCGCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTA 322358 | |||||| || ||| ||| ||||||||||||||| || ||||||||||| || || | Sbjct 71 CTGCAATTCTACCAGCATCCTTAGTTGCTTGTCTCTGAGCATCATTAAAATAGGCAGGAA 12 Query 322359 CAGTAATAACT 322369 | ||||||||| Sbjct 11 CTGTAATAACT 1 >seq293223 Length=445 Score = 104 bits (114), Expect = 2e-16 Identities = 76/88 (86%), Gaps = 3/88 (3%) Strand=Plus/Minus Query 870789 CAAAGAAAATTATTGTCG---ATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTG 870845 |||| |||| |||||| | |||||||||||||||| ||||| |||||||||||| ||| Sbjct 137 CAAAAAAAAATATTGTAGTAGATTATTCTTCTCCAAACATTGCAAAAGAAATGCATGTTG 78 Query 870846 GACATTTAAGATCAACTATTATTGGTGA 870873 ||||||||||||||||||| || || || Sbjct 77 GACATTTAAGATCAACTATAATAGGAGA 50 >seq287177 Length=89695 Score = 104 bits (114), Expect = 2e-16 Identities = 197/289 (68%), Gaps = 6/289 (2%) Strand=Plus/Plus Query 518024 TTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGT 518083 || ||||| || ||||| || | | ||| | || | || ||| | || | ||| | Sbjct 32690 TTGTCAAAGTCCTCACCACCAAGATGAGTGTCACCAGCTGTGGCTTTAACCTCGAAGATA 32749 Query 518084 CCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGT 518143 || || |||| | | ||||| |||||| ||| ||||| || | |||||| || || Sbjct 32750 CCCTCCTCAATGGTGAGAAGAGAGACATCAAAGGTACCACCTCCAAGATCAAAGATGAGG 32809 Query 518144 ACATTCATTTCTTTGTCT-TGG-----TTTTTATCAAGACCATACGCAAAAGCAGCAGCA 518197 |||||| | || | ||| || || ||||||||||| |||| |||||||| Sbjct 32810 ACATTCTTCTCACCAACACTGGAAGCCTTCTTGTCAAGACCATAAGCAATGGCAGCAGCT 32869 Query 518198 GTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTG 518257 ||||| || || || || | | ||||| | |||||||| || ||||| || || Sbjct 32870 GTTGGCTCGTTGATGATACGAAGGACATTGATGCCAGCAATGACACCAGCATCCTTGGTA 32929 Query 518258 GCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 || || || || || || || || |||||||| ||||| | ||| |||| Sbjct 32930 GCCTGCCTCTGCGAGTCATTGAAGTATGCAGGTACAGTGACAACAGCAT 32978 >seq205139 Length=106759 Score = 93.3 bits (102), Expect = 3e-13 Identities = 194/288 (67%), Gaps = 6/288 (2%) Strand=Plus/Plus Query 518023 ATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG 518082 ||| ||||| || ||||| || | | ||| | || | || ||| | || | || | Sbjct 88167 ATTGTCAAAGTCCTCACCACCAAGATGAGTGTCACCAGCTGTGGCTTTAACCTCAAAGAT 88226 Query 518083 TCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAG 518142 || || |||| | | ||||| |||||| ||| ||||| || | ||||| || || Sbjct 88227 GCCCTCCTCAATGGTGAGAAGAGAGACATCAAAGGTACCACCTCCAAGGTCAAAGATGAG 88286 Query 518143 TACATTCATTTCTTTGTCT-TGG-----TTTTTATCAAGACCATACGCAAAAGCAGCAGC 518196 || ||| | || | ||| || || ||||||||||| |||| |||||||| Sbjct 88287 GACGTTCTTCTCACCAACACTGGAAGCCTTCTTGTCAAGACCATAAGCAATGGCAGCAGC 88346 Query 518197 AGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGT 518256 ||||| ||||| || || | | ||||| | |||||||| || ||||| || || Sbjct 88347 TGTTGGCTCATTGATGATACGGAGGACATTGATGCCAGCAATGACACCAGCATCCTTGGT 88406 Query 518257 GGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 518304 || || || || || || || || |||||||| ||||| | ||| || Sbjct 88407 AGCCTGCCTCTGCGAGTCATTGAAGTATGCAGGTACAGTGACAACAGC 88454 >seq73823 Length=2501 Score = 91.5 bits (100), Expect = 1e-12 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 |||||||| | || || ||||||||||| || || || | | ||| | | || || Sbjct 790 CCATACGCCAGCGCTGCGGCAGTTGGTTCGTTGATGATACGCTTAACTTCTAACCCTGCG 731 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 || | || ||||||||||| ||||| | ||| | |||||| || ||||| || ||||| Sbjct 730 ATACGGCCAGCATCTTTAGTTGCTTGACGTTGCGCATCGTTGAAGTATGCCGGTACAGTG 671 Query 518297 ATAACGGCATCAGTTACT 518314 |||||||| ||||| ||| Sbjct 670 ATAACGGCTTCAGTCACT 653 >seq236987 Length=98127 Score = 86.0 bits (94), Expect = 5e-11 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 518188 AGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGC 518247 ||||||||||||||||||||| || || || |||| ||| |||||||| | || || Sbjct 66998 AGCAGCAGCAGTTGGTTCATTGATGATCCTTTGGACATCAAGCCCAGCAATACGGCCAGC 67057 Query 518248 ATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 518304 ||| || ||||| || || || | ||| || || || || ||||| ||||| || || Sbjct 67058 ATCCTTGGTGGCCTGCCTCTGAGCATCATTGAAGTAAGCTGGAACGGTAATGACAGC 67114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3756049409546026