Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_014661.1 Length=164093 Score E Sequences producing significant alignments: (Bits) Value seq1462 158 1e-33 seq260686 156 4e-33 seq65234 132 5e-26 >seq1462 Length=4781 Score = 158 bits (174), Expect = 1e-33 Identities = 300/438 (68%), Gaps = 8/438 (2%) Strand=Plus/Minus Query 141456 TTGATTTGAAGGCCATAATCCATGTGACGAATACGGTTTTCTTCAACACCTTTGTTGTTC 141515 |||||||| | ||| ||||| | |||||| | |||||| |||||||||| ||| || Sbjct 1436 TTGATTTGTACGCCGTAATCTAGGTGACGGACACGGTTACCTTCAACACCACGGTTATTT 1377 Query 141516 TTCAACACAATCAAGTTTTCCACTTCAAGGTGCCACATAGGGAAGAACATTGTTGCCGAA 141575 |||| || | ||| |||| | ||| | ||||||||||||| | |||| ||| || | | Sbjct 1376 TTCAGGACTAATAAGCTTTCAATTTCCAAGTGCCACATAGGGTAAAACAGTGTCGCGGCA 1317 Query 141576 CCTTTACGAATACCACCTTGAGAACAGCAATGAACCGCTGAGTTAAAGTGCTTCCAGAAA 141635 || || | || ||||| || || | | || || | | ||||| || |||| Sbjct 1316 CCCCCGCGTACGCCGCCTTGCGAGCAAGATTTCACGGCCGTCTGGAAGTGTTTGTAGAAC 1257 Query 141636 GGTACTAC-GCCAGTGTGTTTGACTTCGCCTGGGCCAATTTTCGAACCTTCAGCTCGAAT 141694 || | ||| || || || |||| || | ||| ||| || ||||| Sbjct 1256 GGGA-TACAACCGGTATGGAAAGCTTCACCACCACGGATTGGGCTGCCTAGCGCACGAAT 1198 Query 141695 CATGCCTGCGTTAATCCCGATACCTGCTCGCTTAGAAACATACTTAACAATAGC---AGA 141751 ||| || || || ||||| ||||| || | ||||| || ||||| ||||| ||| Sbjct 1197 ACGGCCAGCATTGATACCGATCCCTGCGCGTTGTGAAACGTATTTAACGATAGCACTAGA 1138 Query 141752 GTTTGCATCATTGATTGAGTCAAGGCTGTCACCAGATTCAATAACTACACATGAACTGAA 141811 | | | ||||| ||||| | ||| || ||| | || |||| || ||||| ||||| Sbjct 1137 AGTGG---CGTTGATAGAGTCTAAGCTATCGCCACACTCGATAAGCACGCATGAGCTGAA 1081 Query 141812 TTGACGAGTTGGGGTACGAACACCAGCCATAATTGGAGTAGGCAACGAGATTTTACGAGT 141871 ||| ||||| || || || || |||||||| ||||| ||||| || || |||||| || Sbjct 1080 TTGGCGAGTCGGCGTCCGTACCCCAGCCATGATTGGCGTAGGTAAGGAAATTTTAAAGGT 1021 Query 141872 TGAAACAGCTTCATAAAA 141889 || || || |||||||| Sbjct 1020 CGACACGGCATCATAAAA 1003 >seq260686 Length=13603 Score = 156 bits (172), Expect = 4e-33 Identities = 277/403 (69%), Gaps = 6/403 (1%) Strand=Plus/Minus Query 141467 GCCATAATCCATGTGACGAATACGGTTTTCTTCAACACCTTTGTTGTTCTTCAACACAAT 141526 ||| || ||||| ||||| | ||||| ||||||| || ||||||||||| ||| | Sbjct 5573 GCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCCGCGGTTGTTCTTCAGCACCAG 5514 Query 141527 CAAGTTTTCCACTTCAAGGTGCCACATAGGGAAGAACATTGTTGCCGAACCTTTACGAAT 141586 || | |||||||||| || |||||||| ||| |||||| || || | ||| || | Sbjct 5513 CAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAGGGTCGCTGCACCGCCGCGCAC 5454 Query 141587 ACCACCTTGAGAACAGCAATGAACCGCTGAGTTAAAGTGCTTCCAGAAAGGTACTACGCC 141646 || || ||||| ||| | | ||||| | | |||||||| |||| || | ||| Sbjct 5453 GCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTGCTTATAGAACGGAATGCAGCC 5394 Query 141647 AGTGTGTTTGACTTCGCCTGGGCCAATTTTCGAACCTTCAGCTCGAATCATGCCTGCGTT 141706 ||||| |||| || || || || || || || || ||||| Sbjct 5393 GGTGTGGAATGCTTCACCGCCGCGGATCGGGCTGCCCAGCGCACGGATGCGACCGGCGTT 5334 Query 141707 AATCCCGATACCTGCTCGCTTAGAAACATACTTAACAATAGCA---GAGTTTGCATCATT 141763 ||| |||||||| || |||| |||||| ||||| ||||| || ||| | || | | | Sbjct 5333 AATGCCGATACCGGCACGCTGAGAAACGTACTTCACAATCGCGCTGGAGGTGGCGTTAAT 5274 Query 141764 GATTGAGTCAAGGCTGTCACCAGATTCAATAACTACACATGAACTGAATTGACGAGTTGG 141823 | || ||||||||||| || | ||||| | ||| || || ||||| || || || || Sbjct 5273 G---GAATCAAGGCTGTCGCCGCACTCAATCAGTACGCAGGAGCTGAACTGGCGCGTCGG 5217 Query 141824 GGTACGAACACCAGCCATAATTGGAGTAGGCAACGAGATTTTA 141866 ||| || || || | ||||||||| || |||| ||| || ||| Sbjct 5216 GGTGCGCACGCCGGACATAATTGGCGTCGGCAGCGAAATCTTA 5174 >seq65234 Length=1614 Score = 132 bits (146), Expect = 5e-26 Identities = 296/442 (67%), Gaps = 2/442 (0%) Strand=Plus/Plus Query 141449 TAACTCATTGATTTGAAGGCCATAATCCATGTGACGAATACGGTTTTCTTCAACACCTTT 141508 ||| | ||| ||||| | ||||||| | ||||| | | |||||||||| ||| | Sbjct 652 TAATTTATTAATTTGTACAGCATAATCAAGATGACGTACTCTATTTTCTTCAATTCCTCT 711 Query 141509 GTTGTTCTTCAACACAATCAAGTTTTCCACTTCAAGGTGCCACATAGGGAAGAACATTGT 141568 || || || || || | || ||||| | ||| || ||||| || ||| | || | || Sbjct 712 ATTATTTTTTAAAACTAATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAAACAGT 771 Query 141569 TGCCGAACCTTTACGAATACCACCTTGAGAACAGCAATGAACCGCTGAGTTAAAGTGCTT 141628 ||| | ||| | || |||||||||||||| | | || || | ||||| || Sbjct 772 TGCGGCCCCTCCTCTAACTCCACCTTGAGAACAAGATTTTACTGCGCTTTGGAAGTGTTT 831 Query 141629 CCAGAAAGGTACTACG-CCAGTGTGTTTGACTTCGCCTGGGCCAATTTTCGAACCTTCAG 141687 | ||||| | ||| || || || |||| || | || ||| || Sbjct 832 ATAAAAAGGAA-TACATCCGGTATGAAATGCTTCTCCATTTCTGATAGGACTTCCTAAAG 890 Query 141688 CTCGAATCATGCCTGCGTTAATCCCGATACCTGCTCGCTTAGAAACATACTTAACAATAG 141747 ||||||| || |||||||| || || |||||||| | ||||||||| || ||||| | Sbjct 891 CTCGAATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTACAATTG 950 Query 141748 CAGAGTTTGCATCATTGATTGAGTCAAGGCTGTCACCAGATTCAATAACTACACATGAAC 141807 || ||| | |||| || |||| | | || || ||||||| | ||||| |||| Sbjct 951 CACTAGTTGTAGCATTAATAGAGTTTAAATTATCTGCACATTCAATTAACACACAAGAAC 1010 Query 141808 TGAATTGACGAGTTGGGGTACGAACACCAGCCATAATTGGAGTAGGCAACGAGATTTTAC 141867 | |||||||||||||| || | || || | |||||| || || || | || |||||| Sbjct 1011 TAAATTGACGAGTTGGTGTTCTTACTCCTGACATAATCGGTGTGGGTAGAGATATTTTAA 1070 Query 141868 GAGTTGAAACAGCTTCATAAAA 141889 ||| |||| || | |||||| Sbjct 1071 AAGTGGAAATTGCATTATAAAA 1092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521693651891480