Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_014662.1 Length=165540 Score E Sequences producing significant alignments: (Bits) Value seq79071 163 3e-35 seq65234 156 4e-33 seq222524 136 4e-27 seq161181 120 3e-22 seq209331 105 7e-18 seq15764 105 7e-18 >seq79071 Length=852 Score = 163 bits (180), Expect = 3e-35 Identities = 140/173 (81%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 62002 GTGAAAGTACGTGCAATAACGTCACGCTGCTGTTCTGACGTCAGAGAATTAAATCGGACA 62061 || || ||||| | ||| ||||| |||||||| || | |||||| || ||||| || || Sbjct 194 GTAAAGGTACGGGTAATTACGTCGCGCTGCTGCTCAGGCGTCAGTGAGTTAAAACGCACG 253 Query 62062 GCATAACCAGAAACACGAATAGTCAGCTGAGGATATTTTTCTGGATGTTGAACTGCATCT 62121 ||||| || |||||||| ||||||||||| ||||| ||||| ||||||| |||||||||| Sbjct 254 GCATAGCCTGAAACACGGATAGTCAGCTGCGGATAGTTTTCAGGATGTTTAACTGCATCT 313 Query 62122 TCTAAAGTTTCTTTAGTCAGAACATTCACGTTCAGATGTTGGCCACCTTCAAC 62174 || | ||||| | |||||| || ||||||||||| || ||||||||||| Sbjct 314 TCCAGCGTTTCGCGACGCAGAACGTTGACGTTCAGATGCTGTCCACCTTCAAC 366 >seq65234 Length=1614 Score = 156 bits (172), Expect = 4e-33 Identities = 301/444 (68%), Gaps = 14/444 (3%) Strand=Plus/Plus Query 137901 TTGATTTGAACACCATAATCCAAGTGACGAATTCGGTTTTCATCTACGCCTTTGTTGTTC 137960 || ||||| ||| ||||||| | ||||| | || ||||| || | ||| | || || Sbjct 659 TTAATTTGTACAGCATAATCAAGATGACGTACTCTATTTTCTTCAATTCCTCTATTATTT 718 Query 137961 TTAAGTACGAGGAGGTTCTCAACTTCAAGGTGCCAGATTGGATAGTACAATGTCGCCGCG 138020 || | || | | || |||| ||| || ||||| ||||| || | | || || || Sbjct 719 TTTAAAACTAATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAAACAGTTGCGGCC 778 Query 138021 CCACCACGGACTCCGCCTTGGGAACAAGACTTAACTGCTGTTTGGATGTGTTTCCAGAAA 138080 || || | ||||| ||||| |||||||| || ||||| |||||| |||||| | ||| Sbjct 779 CCTCCTCTAACTCCACCTTGAGAACAAGATTTTACTGCGCTTTGGAAGTGTTTATAAAAA 838 Query 138081 GGAATAACTCCAGTATGCTTGACTTCTCCGAAGCCGATTTTTGA----ACCTTCT---GC 138133 |||||| ||| ||||| ||||||| |||| ||| || | || || Sbjct 839 GGAATACATCCGGTATGAAATGCTTCTCC-------ATTTCTGATAGGACTTCCTAAAGC 891 Query 138134 ACGAATCATACCTGCGTTAATGCCGATACCAGCACGTTTAGAGATGTACTCTACAATTGA 138193 ||||| ||| ||||||||||| || || || |||| ||| | || | |||||||| Sbjct 892 TCGAATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTACAATTGC 951 Query 138194 TTCAGCTGATTTGTTAATTGACTTCAGTGAATCACCAGCTTCAATAACAACGCAAGAACT 138253 || || ||||| || || | ||| || |||||| | || |||||||| Sbjct 952 ACTAGTTGTAGCATTAATAGAGTTTAAATTATCTGCACATTCAATTAACACACAAGAACT 1011 Query 138254 GAATTGACGAGTAGGAGTACGAGCACCTGCCATGATTGGAGTTGGCAGAGAAATTTTCTT 138313 ||||||||||| || || | | |||| ||| || || || || ||||| ||||| Sbjct 1012 AAATTGACGAGTTGGTGTTCTTACTCCTGACATAATCGGTGTGGGTAGAGATATTTTAAA 1071 Query 138314 AGTTGACACAGCATCATAAAAACG 138337 ||| || | |||| |||||| || Sbjct 1072 AGTGGAAATTGCATTATAAAAGCG 1095 >seq222524 Length=8439 Score = 136 bits (150), Expect = 4e-27 Identities = 134/173 (77%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 62002 GTGAAAGTACGTGCAATAACGTCACGCTGCTGTTCTGACGTCAGAGAATTAAATCGGACA 62061 || || ||||| | ||| ||||||||||||||||||| ||||| ||| ||||| || || Sbjct 4038 GTAAAGGTACGCGTAATCACGTCACGCTGCTGTTCTGGCGTCAAAGAGTTAAAACGCACG 4097 Query 62062 GCATAACCAGAAACACGAATAGTCAGCTGAGGATATTTTTCTGGATGTTGAACTGCATCT 62121 |||||||| ||||| ||||| |||||||| |||||||| || || || | || || ||| Sbjct 4098 GCATAACCGGAAACGCGAATGGTCAGCTGCGGATATTTCTCCGGGTGCTTCACCGCCTCT 4157 Query 62122 TCTAAAGTTTCTTTAGTCAGAACATTCACGTTCAGATGTTGGCCACCTTCAAC 62174 || | ||||| |||| || || ||||||||||| || || || || || Sbjct 4158 TCCAGCGTTTCACGGCTCAGGACGTTGACGTTCAGATGCTGACCGCCCTCCAC 4210 >seq161181 Length=1368 Score = 120 bits (132), Expect = 3e-22 Identities = 180/253 (71%), Gaps = 6/253 (2%) Strand=Plus/Minus Query 67807 TAGTTTTCCCATGCATATTCACGAAACCAGCCAGATGTAATGCTAGTACAAACTTTTTCC 67866 || || | ||| ||||||||||| ||||| ||| ||| ||||||||||||||||| | Sbjct 679 TAATTGTTCCAAGCATATTCACGGAACCAACCACTTGTGATGCTAGTACAAACTTTCATC 620 Query 67867 AAAGC--GTACATAAAT-GAACCCGTAGGGTCTGGGTTGAAATTATTTGGAATTTGATGG 67923 || || || || || | ||| | || |||| ||||| | | |||||||| Sbjct 619 AAGGCAAGTTCAAAACTATAACGTGCAG---CTGGTTTGAAGTCAAACGGAATTTGGCTA 563 Query 67924 CGTTCTAAAGCAAGTACACAAGTTTCTTCATATACACCTGCAAGCTTAAGTTCTTCAGGA 67983 || || | |||||||||||||||||||||||| || || || || |||||| Sbjct 562 CGCTCAAGAGCAAGTACACAAGTTTCTTCATAAACCCCAAACAGACGAATCTCTTCATCT 503 Query 67984 AGAGAATCGAACTTCTCTTTTGAAGTCATTACTTCAGAGCCATCTTTCATGTAGAAAGTA 68043 | || | || || ||||| ||||| |||| |||||||||||||||||||| Sbjct 502 ACAGCAAAAAATTTATCTTTACTGGTCATCACTTGTTCACCATCTTTCATGTAGAAAGTG 443 Query 68044 TAAGCAGGACGAC 68056 || |||||| ||| Sbjct 442 TATGCAGGATGAC 430 >seq209331 Length=9407 Score = 105 bits (116), Expect = 7e-18 Identities = 97/123 (79%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 61988 ATTACATTTCCTTGGTGAAAGTACGTGCAATAACGTCACGCTGCTGTTCTGACGTCAGAG 62047 |||||| | || ||||| || || | ||| || || ||||||||||| ||||| | Sbjct 302 ATTACAGTGATTTAGTGAAGGTTCGGGTAATCACATCCTGCTGCTGTTCTTTAGTCAGTG 361 Query 62048 AATTAAATCGGACAGCATAACCAGAAACACGAATAGTCAGCTGAGGATATTTTTCTGGAT 62107 | ||||| ||||| || ||||| ||||| ||||| |||||||| |||||||| ||||||| Sbjct 362 AGTTAAAGCGGACCGCGTAACCGGAAACGCGAATGGTCAGCTGCGGATATTTCTCTGGAT 421 Query 62108 GTT 62110 ||| Sbjct 422 GTT 424 >seq15764 Length=1899 Score = 105 bits (116), Expect = 7e-18 Identities = 228/330 (69%), Gaps = 26/330 (8%) Strand=Plus/Minus Query 136177 ACAATCTCATCAAACACCTTTGCCGGGTCATTCAGCAGGTTACGCATGATGTGAGTATAT 136236 || || || ||||||||| |||||| || || | | ||||| |||||||| || || Sbjct 971 ACGATATCGTCAAACACCACTGCCGGATCGTTAACGATATTACGGATGATGTGGGTGTAA 912 Query 136237 GAACGAGAGTGAATCGTTTCAGAGAACGTCCAGGTCTGGTTCCATGTATCGAGTGATGGG 136296 ||||| ||||||||||| || ||||||| |||||| | |||| || || ||| Sbjct 911 GAACGGGAGTGAATCGTCTCTGAGAACGCCCAGGTTTCAATCCAGGTTTCCAGT------ 858 Query 136297 TCAGAAATC-AGAGCAGAAAGAACAGC----AGCTGGAGCT-CGGCCTTGGATTGAATCC 136350 |||| |||| ||| ||| | |||| | | | ||| ||||| || || |||||| Sbjct 857 TCAGGAATCGAGATCAGCGGCAGCAGCGCGACGTTCGGGCTGCGGCCCTGAATAGAATCC 798 Query 136351 AGAAGGCTTTGATATTTCAGATT----ATCAAGGAATACGTTTTGC-TGGCCAACTGGAA 136405 || || | ||||||||||| || || || |||| ||||| | ||| | || | Sbjct 797 AGCAGCGTCTGATATTTCAGGTTGCTGATAAA--AATATGTTTTTCGTGG---TCCGGCA 743 Query 136406 GC-TTTTCAAATTGAGCTCGGTC-AGTCATCAGGTTAACTTCTTCAGGACGCCAGAAGAA 136463 || | ||| || || || || | | || || ||||| |||||||||||||| Sbjct 742 GCGCCTGGTAATCGA-TGCGATCGCGTGA-AACGTCGACCTCTTCCGGACGCCAGAAGAA 685 Query 136464 CGAGAGTTGTTTCTCAATCAGTTCTTCAAA 136493 ||||| || || || ||||| | |||||| Sbjct 684 GGAGAGCTGCTTTTCGATCAGCTTTTCAAA 655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 526295156980000