Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq121512 141 1e-28 seq271511 116 5e-21 seq170665 113 6e-20 seq175410 104 3e-17 seq75153 91.5 2e-13 >seq121512 Length=219671 Score = 141 bits (156), Expect = 1e-28 Identities = 120/148 (81%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232 ||| || ||||| || |||| || || || || ||||| ||||||||||| || ||||| Sbjct 213035 CTTCGCGGAGCGCATCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTT 212976 Query 102233 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292 |||||| || | |||||||||||||| || |||||||| || ||| |||||||||||| Sbjct 212975 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGGCTCATGCCGGGCCTCACCTTCTCCAACGA 212916 Query 102293 GCTTATCTCTCGTGACGAGGGACTCCAC 102320 ||| ||||| || |||||||| || ||| Sbjct 212915 GCTCATCTCCCGCGACGAGGGCCTGCAC 212888 >seq271511 Length=5505 Score = 116 bits (128), Expect = 5e-21 Identities = 307/461 (67%), Gaps = 22/461 (5%) Strand=Plus/Minus Query 15839 GATCTTCTCGCGTCCCCGAACACTTGGGAGAGCTACTTGGATCTTACGATCAAAGCGACC 15898 ||||| ||| || || |||||| ||| || | || | || ||| |||||||| || Sbjct 4247 GATCTGCTCACGACCGCGAACATCTGGCAGGCCAACAACAACCTGACGGTCAAAGCGTCC 4188 Query 15899 TGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAAT 15958 ||| || || ||||| || || | ||| || || ||||||||||| || | ||| Sbjct 4187 TGGACGCAGCAGCGCAGGGTCCAGTACGTCAGGACGGTTAGTTGCGGCGATAACGATAAT 4128 Query 15959 ACCTGTTTCGTTA---TCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTC 16015 |||| |||||| || |||||||||||||| || | |||||| | || || || Sbjct 4127 ACCT---TCGTTACCTTCGAAACCATCCATCTCAACCAGCATCTGGTTCAGCGTCTGCTC 4071 Query 16016 CCGTTCATCAT-TCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCT 16074 ||||| |||| || || || ||| || | || || || || || || |||| Sbjct 4070 ACGTTCGTCATGTCCACCGCCTA-AACCGGCGCCACGCTGACGACCGACTGCGTCGATCT 4012 Query 16075 CATCAATGAAGACGATGCATGG------TTGATTTTCGCGAGCGACTTCAAAGAGATCCC 16128 |||| || |||| |||||| || || |||| || | ||| || | || | Sbjct 4011 CATCGATAAAGATGATGCACGGAGCCGCTT--TTTTGGCCTG----TTCGAACATGTCAC 3958 Query 16129 GTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-G 16187 | ||||| || || ||||| |||||||| |||||||||| | ||| | || | Sbjct 3957 GCACACGGGATGCACCGACACCGACAAACATTTCCACAAAGTCAGAACCGG-AGATGGTA 3899 Query 16188 ATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCT 16247 | ||| || || || | |||||| ||||| ||| || || | || ||||| ||||| Sbjct 3898 AAGAAAGGCACCTTCGCTTCACCGGCAATCGCTTTTGCCAGCAAGGTTTTACCGGTACCC 3839 Query 16248 GGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 16288 || ||| | | || | ||| ||||||||| |||| Sbjct 3838 GGTGGCCCCACCATCAGAACGCCTTTTGGAATCTTACCGCC 3798 >seq170665 Length=56631 Score = 113 bits (124), Expect = 6e-20 Identities = 201/289 (70%), Gaps = 16/289 (6%) Strand=Plus/Plus Query 15888 TCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCG 15947 |||||||| || || | ||| | ||| ||| | ||| ||| | | || || || || Sbjct 42215 TCAAAGCGTCCAGGTCTAAGCAAAGCGGAATCCAAGATGTCAGCCCTGTTGGTGGCAGCA 42274 Query 15948 ATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATA 16007 | |||| || || || | | ||||||||||||||||| |||| ||||| || | | Sbjct 42275 ACAACAATGATGCCAGTGTTGCCCTCAAAACCATCCATCTCAGTCAGTAGCTGATTGAGA 42334 Query 16008 GTTTGTTCCCGTTCATCATTCGCTGGCATACCACC-AGCACTG-----CGTTGCTTTCCC 16061 || || |||| |||||| ||| | |||||| | ||| | |||| | || Sbjct 42335 GTCTGCTCCCTTTCATCGTTCCC------ACCACCGATACCTGTTCCTCTTTGCCTCCCA 42388 Query 16062 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC--AA 16119 || |||||||| ||||||| || || ||||| || ||| || | | | |||| | Sbjct 42389 ACAGCATCAATTTCATCAACAAACACTATGCAAGGAGCATTCTC-CTTG-GCCTTCTTGA 42446 Query 16120 AGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAA 16168 ||||||| || ||||| ||| || |||||||||||||||||||| || Sbjct 42447 AGAGATCACGAACACGGGAGGCACCAACACCAACAAACATCTCCACGAA 42495 >seq175410 Length=55385 Score = 104 bits (114), Expect = 3e-17 Identities = 278/417 (67%), Gaps = 6/417 (1%) Strand=Plus/Plus Query 15836 CAAGATCTTCTCGCGTCCCCGAACACTTGGGAGAGCTACTTGGATCTTACGATCAAAGCG 15895 || ||||| ||| ||||| |||||| || ||| | || | || ||| ||||| || Sbjct 25251 CAGGATCTGCTCACGTCCGCGAACATCCGGCAGACCAACGACAACCTGACGGTCAAAACG 25310 Query 15896 ACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAAC 15955 || || || || ||||| || || | ||| || || ||||||||||| || | Sbjct 25311 GCCCGGACGCAGCAGCGCTGGGTCGAGTACGTCAGGACGGTTAGTTGCGGCGATAACGAT 25370 Query 15956 AATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTC 16015 || ||| | | || || || |||||||| || | |||||| | || || || Sbjct 25371 GATGCCTTCATTGCCTTCGAAGCCGTCCATCTCAACCAGCATCTGGTTCAATGTCTGCTC 25430 Query 16016 CCGTTCATCAT-TCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCT 16074 || ||||| | | | || ||| |||| ||| || || |||||||| |||| Sbjct 25431 ACGCTCATCGTGACCACCACCTA-AACCGGCACCGCGCTGACGGCCAACGGCATCGATCT 25489 Query 16075 CATCAATGAAGACGATGCATGGT-TGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACA 16133 |||| || |||| |||||| ||| | |||| ||| ||| || | || || ||| Sbjct 25490 CATCGATAAAGATGATGCACGGTGCGGCTTTC-TTAGCCTGTTCGAACATGTCGCGCACA 25548 Query 16134 CGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAA 16192 || || || |||||||||||||| || || |||| | ||||| || | | ||| Sbjct 25549 CGAGATGCACCTACACCAACAAACATTTCAACGAAGTCAGAACCGGAA-ATGGTAAAGAA 25607 Query 16193 GGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 || || || | |||||| ||||| ||| || || || || ||||| ||||| || Sbjct 25608 AGGCACTTTTGCTTCACCGGCAATCGCTTTTGCCAGCAGGGTTTTACCGGTACCCGG 25664 >seq75153 Length=68690 Score = 91.5 bits (100), Expect = 2e-13 Identities = 153/216 (71%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 |||||||| || ||||| || || ||||| || || | ||| | || || ||| Sbjct 40130 CGATCAAACCGCCCTGGCCGCAGAAGCGCCGAGTCGAGCACATCCGGCCTGTTGGTCGCG 40071 Query 15945 GCGATGACAACAATACC--TGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGT 16002 |||| || | | ||| |||||| | || || |||||||| || | ||||||| Sbjct 40070 GCGAGCACGATGACACCGCTGTTTCCGGAG--AAGCCGTCCATCTCCGTGAGCAGCTGGT 40013 Query 16003 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCC 16060 |||| || || |||| ||||| ||| | || ||| ||||||| || ||| | || Sbjct 40012 TAATGGTCTGCTCCCTCTCATCGTTCCCCC-CAC-CCATTCCAGCACCACGCTGCCTCCC 39955 Query 16061 CACGGCATCAATCTCATCAATGAAGACGATGCATGG 16096 ||||| ||||||||||| |||||||||||||| || Sbjct 39954 GACGGCGTCAATCTCATCGATGAAGACGATGCAGGG 39919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 616868804479120