Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq421781 100 3e-16 seq225968 100 3e-16 seq121512 96.9 4e-15 seq271511 87.8 2e-12 seq115808 87.8 2e-12 seq88878 84.2 3e-11 seq248323 82.4 9e-11 >seq421781 Length=259 Score = 100 bits (110), Expect = 3e-16 Identities = 142/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 11761 CCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGA-ACACTGAATGAAGGGAACATT 11819 |||||||| ||||||||||| ||||| | | |||| |||||||| ||| || || Sbjct 59 CCAACACCGACGAACATCTCCACGAACTCGGATCCAGAGACACTGAA-GAATGGCACGCC 117 Query 11820 AGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAG 11879 ||| ||||| || | ||| ||||| ||||||||||| |||||||| | |||| || Sbjct 118 AGATTCACCGGCAGTAGCTTTGGCGAGAAGAGTCTTACCAGTACCAGGAGGACCACTCAG 177 Query 11880 AAGGGCGCCACGGGGGATCTTGGCACC--ACTTCCAAAGTAGCGCTCAGGCTTCTTGAGG 11937 | |||||||| || || ||||| || |||| | | | | |||||| ||||||| Sbjct 178 GACAGCGCCACGAGGAATTTTGGCTCCGAGCTTC--TGGAATCTCGCAGGCTCCTTGAGG 235 Query 11938 AAGTCCACAATCTCC 11952 ||| |||| |||| Sbjct 236 AAGGAAACAAACTCC 250 >seq225968 Length=28617 Score = 100 bits (110), Expect = 3e-16 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 109752 GTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGA 109811 ||| ||||||| ||||||||||| || |||||||||||||| || || || |||||| Sbjct 21038 GTATATGTTAGATGTGTAGGGTTCAAAGCACTCATTGTTGCCAAGAATCTGACTAGTGGA 20979 Query 109812 AGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTC 109846 |||||||||||| ||||||| |||||| ||||| Sbjct 20978 AGCTGTGGGCATTGGAGCCACCAGAAGAGAGTTTC 20944 >seq121512 Length=219671 Score = 96.9 bits (106), Expect = 4e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || ||||||||||| || |||| || || |||||||| || Sbjct 212889 TGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGCCCG 212948 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| |||||||| || || || || |||||||||||||| || ||| Sbjct 212949 CGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCAG 213008 Query 119628 GCGAAAGCGAATAGACGCTCAGC-AAAAGGTCGAGACTTGTCGAACCACTTGAGAGCCCA 119686 ||||| |||| | ||||| || || | || | ||||| ||| ||| ||||| Sbjct 213009 GCGAAGGCGACGATGCGCTCCGCGAAGCGCTCCCCGC-CGTCGATCCAGCGGAGCGCCCA 213067 Query 119687 GTTGGCCTTACG 119698 || |||||| || Sbjct 213068 GTCGGCCTTGCG 213079 >seq271511 Length=5505 Score = 87.8 bits (96), Expect = 2e-12 Identities = 253/385 (66%), Gaps = 22/385 (6%) Strand=Plus/Minus Query 11496 AATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTT 11555 || || ||| || || || ||||| || || || ||| || || | || |||||| Sbjct 4208 AACCTGACGGTCAAAGCGTCCTGGACGCAGCAGCGCAGGGTCCAGTACGTCAGGACGGTT 4149 Query 11556 TGTAGCGGCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAG 11615 || ||||| || || | ||| || | | |||||||| ||||| || || | Sbjct 4148 AGTTGCGGCGATAACGATAATACCTTCGTTACCTTCGAAACCATCCATCTCAACCAGCAT 4089 Query 11616 CTGGTTGATCGTCTGTTCACGCTCATCGT-TGGAGGGCATACCACCTGCCGAACGCTTCT 11674 |||||| | |||||| ||||| || || | | | || || ||| || ||||| Sbjct 4088 CTGGTTCAGCGTCTGCTCACGTTCGTCATGTCCACCGCCTAA-ACCGGCGCCACGCTGAC 4030 Query 11675 TACCGACAGCGTCAATCTCATCGATGAATACGATACACGG------TTGGTTGGCACGTG 11728 |||||| ||||| ||||||||||| || | ||| ||||| || ||| | Sbjct 4029 GACCGACTGCGTCGATCTCATCGATAAAGATGATGCACGGAGCCGCTTTTTTG------G 3976 Query 11729 CCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGT 11788 |||||||||| | ||||| ||||| || || ||||| || ||||| || || |||| Sbjct 3975 CCTGTTCGAACATGTCACGCACACGGGATGCACCGACACCGACAAACATTTCCACAAAGT 3916 Query 11789 TTG--CGGCAGAACACTG--AATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCG 11844 | | | ||| || || ||| || || || | ||||| || || ||| || Sbjct 3915 CAGAACCGGAGA----TGGTAAAGAAAGGCACCTTCGCTTCACCGGCAATCGCTTTTGCC 3860 Query 11845 AGGAGAGTCTTACCCGTACCAGGTG 11869 || | || ||||| ||||| |||| Sbjct 3859 AGCAAGGTTTTACCGGTACCCGGTG 3835 >seq115808 Length=163311 Score = 87.8 bits (96), Expect = 2e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 109752 GTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGA 109811 ||| ||||| | |||||| ||||| || |||||||||||||| || ||||| ||| || Sbjct 96514 GTAAATGTTCGACGTGTATGGTTCAAAGCACTCATTGTTGCCAAGAATTTGACTAGTAGA 96455 Query 109812 AGCTGTGGGCATGGGAGCCATGAGAAGA 109839 ||| |||||||| ||||||| |||||| Sbjct 96454 AGCAGTGGGCATTGGAGCCACAAGAAGA 96427 >seq88878 Length=31467 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC 136772 ||||||||||||||||||||||||||| |||||||||||||| | |||||||| || Sbjct 6078 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCAGGTTCGAGACC 6023 >seq248323 Length=624 Score = 82.4 bits (90), Expect = 9e-11 Identities = 113/157 (72%), Gaps = 16/157 (10%) Strand=Plus/Minus Query 169357 TTGGCACCATAACCGTTACGACCACC---GACGAT--CCTCTTTTGAGAGTCATCATAAT 169411 |||||||| ||||||||||||||||| ||| | |||||| ||| || || | Sbjct 350 TTGGCACCGTAACCGTTACGACCACCAGTGACTTTGGCCTCTT-----CGTCGTCGTAGT 296 Query 169412 TGGTACTCGTGAGAAGGTGACCGAATACAAGTTCGGGATTCCAGAGACCTTCCTTTTCAT 169471 ||| | ||||| ||||| ||||| | | |||||| |||||| |||||||| || | Sbjct 295 TGGAAGATGTGAGGAGGTGGCCGAAAATCATCTCGGGAATCCAGATGCCTTCCTTCTCGT 236 Query 169472 GCATTTTTACAGAAATCCCACCGAGAGGACCGTTGTT 169508 |||| | |||| ||| |||| |||||||||| Sbjct 235 GCATCTCAACAGGAATACCAC------GACCGTTGTT 205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 585300635153800