Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq121512 111 2e-19 seq170665 100 3e-16 seq421781 89.7 6e-13 seq175410 84.2 3e-11 seq115808 84.2 3e-11 seq75153 82.4 9e-11 >seq121512 Length=219671 Score = 111 bits (122), Expect = 2e-19 Identities = 300/453 (66%), Gaps = 12/453 (3%) Strand=Plus/Plus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || || || |||||||| |||||||||||||| || | || ||| ||||| Sbjct 212589 TACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCATC 212648 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATGGG-TGGCACCCCAACTTGTTTGAGGAGACG 117104 |||| || || || | ||||| | | | ||| |||| | | ||| || || Sbjct 212649 CAGTCGAACGGGTTGGTGGCGTTGTACAGCTTCTTGCAGCCCAGCGCCAT-GAGCAGGCG 212707 Query 117105 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACA 117164 || | || |||| ||||||| | ||| || |||||| |||| ||| || Sbjct 212708 GTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGCA 212767 Query 117165 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 117224 ||||| ||||| ||| |||| | |||| || || || ||||| |||||| || Sbjct 212768 GGGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCCTCGGACACGATCTCGAA 212827 Query 117225 GATAGTTTCGGTAGTGGGTCTA---TTACGCAAAG--TCTTGAAGAGCTCCACGGCAAAC 117279 || ||| | | | || | | ||| || | | | |||| ||| || Sbjct 212828 GACG----CGGGACTCG-TCCAGCTTGCCGCGGAGGATGTCGTAGAGGAGGCAGGCGAAG 212882 Query 117280 TCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATG 117339 || ||| || ||||| || ||||| || || || || |||||| ||||| |||||| Sbjct 212883 TCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATG 212942 Query 117340 AGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCC 117399 || || |||||||| | ||| | || |||||||| || || ||||||||||| ||||| Sbjct 212943 AGCCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCG 213002 Query 117400 ACACACGCAAACGCAAAAAGGCGCTCGGCGAAG 117432 || || || || || | | |||||| |||||| Sbjct 213003 ACGCAGGCGAAGGCGACGATGCGCTCCGCGAAG 213035 >seq170665 Length=56631 Score = 100 bits (110), Expect = 3e-16 Identities = 195/287 (68%), Gaps = 12/287 (4%) Strand=Plus/Plus Query 9195 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9254 |||||||| || || | ||| | ||| ||| | ||| ||| | | || || || || Sbjct 42215 TCAAAGCGTCCAGGTCTAAGCAAAGCGGAATCCAAGATGTCAGCCCTGTTGGTGGCAGCA 42274 Query 9255 ATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATA 9314 | |||| || || || | ||||||||||||||||| |||| || || || | | Sbjct 42275 ACAACAATGATGCCAGTGTTGCCCTCAAAACCATCCATCTCAGTCAGTAGCTGATTGAGA 42334 Query 9315 GTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCAC-TG-----CGTTGCTTTCCC 9368 || || |||| |||||| ||| | |||||| || || | |||| | || Sbjct 42335 GTCTGCTCCCTTTCATCGTTCCC------ACCACCGATACCTGTTCCTCTTTGCCTCCCA 42388 Query 9369 ACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 9428 || |||||||| ||||||| || || || || || ||| || ||| | | ||| Sbjct 42389 ACAGCATCAATTTCATCAACAAACACTATGCAAGGAGCATTCTCCTTGGCCTTCTTGAAG 42448 Query 9429 AGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAA 9475 ||||| ||||| | ||| || |||||||||||||||||||| || Sbjct 42449 AGATCACGAACACGGGAGGCACCAACACCAACAAACATCTCCACGAA 42495 >seq421781 Length=259 Score = 89.7 bits (98), Expect = 6e-13 Identities = 152/216 (70%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 9416 GGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAA 9475 |||| || | ||||| ||||| || ||| | || ||||| || ||||||||||| || Sbjct 25 GGCGTTTGCGAAGAGGTCGCGTACTCTTGAAGGACCAACACCGACGAACATCTCCACGAA 84 Query 9476 GTTTGCGGCGGA-ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGA 9534 | | | || ||| || | ||| || || ||||||||| ||| | ||| ||||| Sbjct 85 CTCGGATCCAGAGACACTGAA-GAATGGCACGCCAGATTCACCGGCAGTAGCTTTGGCGA 143 Query 9535 GAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGC 9594 ||||||||||||| ||||| || ||| |||| || || || ||||| ||||| | Sbjct 144 GAAGAGTCTTACCAGTACCAGGAGGACCACTCAGGACAGCGCCACGAGGAATTTTGGCTC 203 Query 9595 C--ACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAA 9628 | |||| | ||||| |||| | |||||| || Sbjct 204 CGAGCTTC--TGGAATCTCGCAGGCTCCTTGAGGAA 237 >seq175410 Length=55385 Score = 84.2 bits (92), Expect = 3e-11 Identities = 276/420 (66%), Gaps = 12/420 (3%) Strand=Plus/Plus Query 9143 CAAGATCTTCTCGCGTCCCCGAACACTTGGGAGAGCTACTTGGATCTTACGATCAAAGCG 9202 || ||||| ||| ||||| |||||| || ||| | || | || ||| ||||| || Sbjct 25251 CAGGATCTGCTCACGTCCGCGAACATCCGGCAGACCAACGACAACCTGACGGTCAAAACG 25310 Query 9203 ACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAAC 9262 || ||||| || ||||| || || | ||| || || || |||||||| || | Sbjct 25311 GCCCGGACGCAGCAGCGCTGGGTCGAGTACGTCAGGACGGTTAGTTGCGGCGATAACGAT 25370 Query 9263 AATACCTGTTTCATTA---TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTG 9319 || ||| ||||| || || || |||||||| || | ||||| | || || Sbjct 25371 GATGCCT---TCATTGCCTTCGAAGCCGTCCATCTCAACCAGCATCTGGTTCAATGTCTG 25427 Query 9320 TTCCCGTTCATCATTCGCTGG-CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAA 9378 || || ||||| | | | || ||| |||| ||| || || |||||||| | Sbjct 25428 CTCACGCTCATCGTGACCACCACCTAA-ACCGGCACCGCGCTGACGGCCAACGGCATCGA 25486 Query 9379 TCTCATCAATGAAGACAATACATGGTT-GATTTTCGCGGGCGATTTCAAAGAGATCGCGA 9437 ||||||| || |||| || || ||| | |||| | | || | || | ||||| Sbjct 25487 TCTCATCGATAAAGATGATGCACGGTGCGGCTTTCTTAGCCTGTT-CGAACATGTCGCGC 25545 Query 9438 ACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GAT 9496 || | || || |||||||||||||| || || |||| | ||||| || | | Sbjct 25546 ACACGAGATGCACCTACACCAACAAACATTTCAACGAAGTCAGAACCGGAA-ATGGTAAA 25604 Query 9497 GAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 ||| || || || | |||||| ||||| ||| || || || || ||||| ||||| || Sbjct 25605 GAAAGGCACTTTTGCTTCACCGGCAATCGCTTTTGCCAGCAGGGTTTTACCGGTACCCGG 25664 >seq115808 Length=163311 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 106463 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 106522 || |||||||||| |||||| || || || ||| | |||| |||| | || ||| Sbjct 95231 GCAATTGATGCCAGATTGCACACGGCAGTTTCAGTGGGACTTGTGAACTCAACTATCTCT 95172 Query 106523 GTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCA 106581 || |||||||||||| |||||| || |||| ||| | ||| ||||| ||| ||||||| Sbjct 95171 GTGCACAAGTTGGAAGACTTAATTGTGCCCAGATTTTGTTGATTACTTTTTCTGTTGCA 95113 >seq75153 Length=68690 Score = 82.4 bits (90), Expect = 9e-11 Identities = 151/216 (70%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 |||||||| || ||||| || || ||||| || || | ||| | || |||||| Sbjct 40130 CGATCAAACCGCCCTGGCCGCAGAAGCGCCGAGTCGAGCACATCCGGCCTGTTGGTCGCG 40071 Query 9252 GCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGT 9309 |||| || | | ||| |||||| | || || |||||||| || | || |||| Sbjct 40070 GCGAGCACGATGACACCGCTGTTTCCGGAG--AAGCCGTCCATCTCCGTGAGCAGCTGGT 40013 Query 9310 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCC 9367 |||| || || |||| ||||| ||| | || ||| ||||||| || ||| | || Sbjct 40012 TAATGGTCTGCTCCCTCTCATCGTTCCCCC-CAC-CCATTCCAGCACCACGCTGCCTCCC 39955 Query 9368 CACGGCATCAATCTCATCAATGAAGACAATACATGG 9403 ||||| ||||||||||| |||||||| || || || Sbjct 39954 GACGGCGTCAATCTCATCGATGAAGACGATGCAGGG 39919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 586299164938040