Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_014792.1 Length=169285 Score E Sequences producing significant alignments: (Bits) Value seq65234 122 9e-23 seq1462 120 3e-22 seq260686 116 4e-21 seq185877 87.8 2e-12 >seq65234 Length=1614 Score = 122 bits (134), Expect = 9e-23 Identities = 291/440 (66%), Gaps = 0/440 (0%) Strand=Plus/Plus Query 141354 TTATTCAACTGAACACCATAGTCCATATGTCTGATGCGGTTTTCTTCAACGCCCTTGTTG 141413 ||||| | || ||| |||| || | ||| | | | |||||||||| || | || Sbjct 656 TTATTAATTTGTACAGCATAATCAAGATGACGTACTCTATTTTCTTCAATTCCTCTATTA 715 Query 141414 TTCTTCAGAACGAGTAAATTTTCAACTTCCAAATGCCATAAAGGATAATAAGCAGTAGCA 141473 || || | ||| | ||||||||||| ||| | |||||||| || ||| || |||| || Sbjct 716 TTTTTTAAAACTAATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAAACAGTTGCG 775 Query 141474 GCGCCGCCACGGATTCCACCTTGTGAACAGGATTTAACAGCCGTTTGGAAATGTTTCCAG 141533 || || || | | ||||||||| ||||| ||||| || || ||||||| ||||| | Sbjct 776 GCCCCTCCTCTAACTCCACCTTGAGAACAAGATTTTACTGCGCTTTGGAAGTGTTTATAA 835 Query 141534 AACGGAATAACACCAGTATGCTTGACTTCACCCATACCGATTTTCGAACCTTCAGCACGA 141593 || |||||| || ||||| |||| || | | ||| ||| ||| ||| Sbjct 836 AAAGGAATACATCCGGTATGAAATGCTTCTCCATTTCTGATAGGACTTCCTAAAGCTCGA 895 Query 141594 ATCATGCCAACGTTGATACCGATACCCGCCCGCTTACTGATATATTCGATGATTGAATTG 141653 || ||| |||| || || || || || || | | | ||||| | |||| | | Sbjct 896 ATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTACAATTGCACTA 955 Query 141654 GCGGTCTTATTGATTGACTTCAGGGAGTCAGCAGCTTCGATAACCACACAGGAACTGAAC 141713 | || ||| || || || | || ||| ||| || | |||||| ||||| || Sbjct 956 GTTGTAGCATTAATAGAGTTTAAATTATCTGCACATTCAATTAACACACAAGAACTAAAT 1015 Query 141714 TGCCGGGTAGGTGTTCTGGCGCCCGCCATGATAGGTGTGGGCAACGAAACCTGTCTTGTG 141773 || || || |||||||| | || | ||| || |||||||| | || | | ||| Sbjct 1016 TGACGAGTTGGTGTTCTTACTCCTGACATAATCGGTGTGGGTAGAGATATTTTAAAAGTG 1075 Query 141774 GATACTGCATCATAAAAACG 141793 || | ||||| |||||| || Sbjct 1076 GAAATTGCATTATAAAAGCG 1095 >seq1462 Length=4781 Score = 120 bits (132), Expect = 3e-22 Identities = 305/462 (66%), Gaps = 4/462 (1%) Strand=Plus/Minus Query 141334 CCAGTCGTTCCATCATCAGGTTATTCAACTGAACACCATAGTCCATATGTCTGATGCGGT 141393 |||| |||| ||| || || || | || || || || || | || | || |||| Sbjct 1459 CCAGACGTTGATACATGAGTTTGTTGATTTGTACGCCGTAATCTAGGTGACGGACACGGT 1400 Query 141394 TTTCTTCAACGCCCTTGTTGTTCTTCAGAACGAGTAAATTTTCAACTTCCAAATGCCATA 141453 | ||||||| || ||| || ||||| || | ||| |||||| |||||| ||||| | Sbjct 1399 TACCTTCAACACCACGGTTATTTTTCAGGACTAATAAGCTTTCAATTTCCAAGTGCCACA 1340 Query 141454 AAGGATAATAAGCAGTAGCAGCGCCGCCACGGATTCCACCTTGTGAACAGGATTTAACAG 141513 ||| ||| | || || || || || || | || ||||| || || ||||| || | Sbjct 1339 TAGGGTAAAACAGTGTCGCGGCACCCCCGCGTACGCCGCCTTGCGAGCAAGATTTCACGG 1280 Query 141514 CCGTTTGGAAATGTTTCCAGAACGGAATAACACCAGTATGCTTGACTTCACCCATACCGA 141573 |||| ||||| ||||| ||||||| ||| ||| ||||| ||||||| || || Sbjct 1279 CCGTCTGGAAGTGTTTGTAGAACGGGATACAACCGGTATGGAAAGCTTCACCACCACGGA 1220 Query 141574 TTTTCGAACCTTCAGCACGAATCATGCCAACGTTGATACCGATACCCGCCCGCTTACTGA 141633 || ||| |||||||| |||| | ||||||||||| || | ||| | ||| Sbjct 1219 TTGGGCTGCCTAGCGCACGAATACGGCCAGCATTGATACCGATCCCTG--CGCGTTGTGA 1162 Query 141634 TA--TATTCGATGATTGAATTGGCGGTCTTATTGATTGACTTCAGGGAGTCAGCAGCTTC 141691 | |||| | ||| | | | | || ||||| || | | | || || || Sbjct 1161 AACGTATTTAACGATAGCACTAGAAGTGGCGTTGATAGAGTCTAAGCTATCGCCACACTC 1102 Query 141692 GATAACCACACAGGAACTGAACTGCCGGGTAGGTGTTCTGGCGCCCGCCATGATAGGTGT 141751 ||||| ||| || || ||||| || || || || || | | || |||||||| || || Sbjct 1101 GATAAGCACGCATGAGCTGAATTGGCGAGTCGGCGTCCGTACCCCAGCCATGATTGGCGT 1042 Query 141752 GGGCAACGAAACCTGTCTTGTGGATACTGCATCATAAAAACG 141793 || || |||| | || || || ||||||||||| || Sbjct 1041 AGGTAAGGAAATTTTAAAGGTCGACACGGCATCATAAAAGCG 1000 >seq260686 Length=13603 Score = 116 bits (128), Expect = 4e-21 Identities = 169/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 141303 GGACTAAACAGAGTGATGTAATCATTCTTAGCCAGTCGTTCCATCATCAGGTTATTCAAC 141362 || || |||||||| || | ||| ||| ||| || | |||||| || |||| | Sbjct 5638 GGGCTGAACAGAGTAATCTCTTCACCCTTCAGCAGGCGCTGATACATCAGCTTGTTCAGC 5579 Query 141363 TGAACACCATAGTCCATATGTCTGATGCGGTTTTCTTCAACGCCCTTGTTGTTCTTCAGA 141422 || || || ||||||||||| | | |||||| |||||||||| |||||||||||| Sbjct 5578 TGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCCGCGGTTGTTCTTCAGC 5519 Query 141423 ACGAGTAAATTTTCAACTTCCAAATGCCATAAAGGATAATAAGCAGTAGCAGCGCCGCCA 141482 || || | |||| ||||||| |||||| | || || | || || || ||||| Sbjct 5518 ACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAGGGTCGCTGCACCGCCG 5459 Query 141483 CGGATTCCACCTTGTGAACAGGATTTAACAGCCGTTTGGAAATGTTTCCAGAACGGAAT 141541 || | || || || || ||||| || || || || ||||| || || |||||||||| Sbjct 5458 CGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTGCTTATAGAACGGAAT 5400 >seq185877 Length=28917 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/156 (73%), Gaps = 4/156 (3%) Strand=Plus/Minus Query 52232 CATGGTTGCTTTCCGGCCGCAATGGCAGACGCCCTTTAATTCAACCAGTTTATCCGAAAT 52291 |||| | ||||| | |||||| ||||||| | |||||||||||||||||||| || Sbjct 13018 CATGCTGGCTTTTCTGCCGCAGTGGCAGATGGTTTTTAATTCAACCAGTTTATCTGACCA 12959 Query 52292 AGCCAGAAG--TCTGGCTGAACCGGGAAATAACTGACCCCGAAAATCTGTTCTTAACCCG 52349 || | ||| ||||| |||| |||||||| || ||||||||||| | ||| || Sbjct 12958 GGCTAAAAGGTATTGGCT--ACCGATAAATAACTCGCCGCGAAAATCTGTACGTAAGCCA 12901 Query 52350 TAACACATAACGGGGATATTGTAATTATCAACCACT 52385 ||||| | || || |||| || ||| |||||| Sbjct 12900 TAACAAAGTACAGGTATATCTAAAACATCCACCACT 12865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 538204373674200