Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_015250.1 Length=159801 Score E Sequences producing significant alignments: (Bits) Value seq65234 100 3e-16 seq1462 84.2 2e-11 >seq65234 Length=1614 Score = 100 bits (110), Expect = 3e-16 Identities = 156/221 (71%), Gaps = 8/221 (4%) Strand=Plus/Plus Query 137449 CCAATGCCCGCTCGTTTTGACACGTACGAAATAATAGCAGATGATGTTTCATTAATCGAG 137508 || || || ||||||| || || || | ||| ||| | ||| ||||||| ||| Sbjct 914 CCTATTCCTGCTCGTTGAGAAACATATTTTACAATTGCACTAGTTGTAGCATTAATAGAG 973 Query 137509 TCCAAGCTATCACCAGATTCAATCAGTACACAAGAACTAAATTGACGTGTTGGTGTACGT 137568 | || |||| || ||||||| | |||||||||||||||||||| |||||||| | | Sbjct 974 TTTAAATTATCTGCACATTCAATTAACACACAAGAACTAAATTGACGAGTTGGTGTTCTT 1033 Query 137569 ACTCCGGCCATGATTGGAGTGGGTAGACTGATTTGCTTTAA----TGAAACTGCGTCATA 137624 ||||| | ||| || || ||||||||| ||| | ||||| |||| ||| | ||| Sbjct 1034 ACTCCTGACATAATCGGTGTGGGTAGA--GATAT--TTTAAAAGTGGAAATTGCATTATA 1089 Query 137625 AAAGTCTTTAACATATTGTAAACGTTTGCTTTTTTCGTCTT 137665 |||| | || ||| | | ||| | ||||||||| || Sbjct 1090 AAAGCGCTGAATATAATTCATACGAATATTTTTTTCGTATT 1130 >seq1462 Length=4781 Score = 84.2 bits (92), Expect = 2e-11 Identities = 277/425 (65%), Gaps = 12/425 (3%) Strand=Plus/Minus Query 137175 ACGTTCAATCATTAAATTGTTCAACTGAATACCATAGTCCATATGACGGATACGGTTTTC 137234 ||||| | ||| | ||||| | || | || || || | ||||||| |||||| | Sbjct 1455 ACGTTGATACATGAGTTTGTTGATTTGTACGCCGTAATCTAGGTGACGGACACGGTTACC 1396 Query 137235 TTCAATGCCTTTGTTGTTCTTGAGAACAATCAGGTTTTCACATTCTAAGTGCCAGCCAGG 137294 ||||| || ||| || || || || | | | ||||| ||| |||||||| ||| Sbjct 1395 TTCAACACCACGGTTATTTTTCAGGACTAATAAGCTTTCAATTTCCAAGTGCCACATAGG 1336 Query 137295 CCAGTAACA-TGTAGCTGAGCCTTTACGAATACCACCTTGAGAGCATGAATGTACTCCAG 137353 | |||| ||| || | || || | || ||||| ||||| || | || | | Sbjct 1335 GTAA-AACAGTGTCGCGGCACCCCCGCGTACGCCGCCTTGCGAGCAAGATTTCACGGCCG 1277 Query 137354 TATTAAAATGCTTCCAGAACGGGGTCACGCCAGTATGCTTAACTTCACCAGGCCCAATCT 137413 | | || || || |||||||| | || ||||| | |||||||| ||| Sbjct 1276 TCTGGAAGTGTTTGTAGAACGGGATACAACCGGTATGGAAAGCTTCACCA---CCACGGA 1220 Query 137414 TTGAACCTTCT---GCACGGATTGCTCCACC--TGAAACCCCAATGCCCGCTCGTTTTGA 137468 ||| | || ||||| || ||| | ||| ||| || || || |||| ||| Sbjct 1219 TTGGGCTGCCTAGCGCACGAATACGGCCAGCATTGATACCG--ATCCCTGCGCGTTGTGA 1162 Query 137469 CACGTACGAAATAATAGCAGATGATGTTTCATTAATCGAGTCCAAGCTATCACCAGATTC 137528 ||||| || |||||| || || | || || ||||| |||||||| ||| | || Sbjct 1161 AACGTATTTAACGATAGCACTAGAAGTGGCGTTGATAGAGTCTAAGCTATCGCCACACTC 1102 Query 137529 AATCAGTACACAAGAACTAAATTGACGTGTTGGTGTACGTACTCCGGCCATGATTGGAGT 137588 || || || || || || ||||| || || || || ||||| || ||||||||||| || Sbjct 1101 GATAAGCACGCATGAGCTGAATTGGCGAGTCGGCGTCCGTACCCCAGCCATGATTGGCGT 1042 Query 137589 GGGTA 137593 |||| Sbjct 1041 AGGTA 1037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 508044958152760