Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_015251.1 Length=235229 Score E Sequences producing significant alignments: (Bits) Value seq65234 127 3e-24 seq213151 91.5 2e-13 >seq65234 Length=1614 Score = 127 bits (140), Expect = 3e-24 Identities = 409/630 (65%), Gaps = 10/630 (2%) Strand=Plus/Plus Query 33121 AACTTGTTAATATGTACTGTATAATCAATATTACGAATACGGGTTTCTTCAGTACCTTTA 33180 || || ||||| ||||| | |||||||| || ||| | | |||||||| | ||| || Sbjct 653 AATTTATTAATTTGTACAGCATAATCAAGATGACGTACTCTATTTTCTTCAATTCCTCTA 712 Query 33181 TTATTTTTCAATACCAGAAGCTTTTCAACTTCCAAATGCCACATAGGATAGTTAATATTA 33240 |||||||| || || | | ||||||| ||| | |||||| || || || || | | Sbjct 713 TTATTTTTTAAAACTAATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAAACAGTT 772 Query 33241 CCACTACCNNNNNGAACACCACCTTGGCTACAGCTCTTAACACCGGTAGTAAAATGTTTC 33300 | || ||| |||||||| ||| || || || | || ||||| Sbjct 773 GCGGCCCCTCCTCTAACTCCACCTTGAGAACAAGATTTTACTGCGCTTTGGAAGTGTTTA 832 Query 33301 CAGAATGGAATGACCCCAGTGTGGGAAACTTCCCCCGAGCGGATACGAGATCCTTCAGCA 33360 | || ||||| || || || | |||| || | |||| || |||| ||| Sbjct 833 TAAAAAGGAATACATCCGGTATGAAATGCTTCTCCATTTCTGATAGGACTTCCTAAAGCT 892 Query 33361 CGAATAGCACCACCATTAATACCAATACCGGCACGGCGGGAAATATATTTCATTATCGCT 33420 ||||| |||| | ||||| || || || || || | |||| |||||| | || || Sbjct 893 CGAATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTACAATTGCA 952 Query 33421 TTTGATGTTTCTCCGATAGATTCAAGAGAGTCACCGGATTCAATTTTAACGCATGAGCTA 33480 | | ||| | ||||| | | | || | |||||||| || || || ||| Sbjct 953 CTAGTTGTAGCATTAATAGAGTTTAAATTATCTGCACATTCAATTAACACACAAGAACTA 1012 Query 33481 AATTGACGAGTTGGAGTTCTTACACCAGAAAGAATTGGTGTCGGTAGAGAAATTTCAAAA 33540 |||||||||||||| |||||||| || || | ||| ||||| |||||||| |||| |||| Sbjct 1013 AATTGACGAGTTGGTGTTCTTACTCCTGACATAATCGGTGTGGGTAGAGATATTTTAAAA 1072 Query 33541 TTACTAGCGGCATTATAAAAATCGAT-AACATATTCCAAACGTTTGGAAACGTCTTCTTC 33599 | | ||||||| |||| || | || ||| | || ||| | | | ||| | Sbjct 1073 GTGGAAATTGCATTAT-AAAAGCGCTGAATATAATTCATACGAAT---ATTTTTTTCGTA 1128 Query 33600 TTGATGAAGACA--CAT--AGCTTGTAACATATATGCAAACTGTGGAGTTTCATAAATTG 33655 || | ||| | | ||| || | ||| |||||| ||| |||| | ||||||| ||| Sbjct 1129 TTTA-GAAAATAAGCATGCAGATATTAAAATATATAAAAATTGTGCACTTTCATATATTT 1187 Query 33656 TACCGTTAGAACGGTCTTTTACAAGATATTTTTCTTTATACTGCATAGCACCAGCATAAG 33715 || || ||| | || || | ||| ||| ||| | || | | | ||||||| Sbjct 1188 CTCCAGTAACACGATTTTGTAATAAATACTTTCCTTCTAATTGTTTTACTGCTGCATAAG 1247 Query 33716 TGAAATTCATATCTCGGGTGTGATCGATAA 33745 |||||||| || || |||||||||| Sbjct 1248 AAAAATTCATGTCACGCCAATGATCGATAA 1277 >seq213151 Length=1427 Score = 91.5 bits (100), Expect = 2e-13 Identities = 206/305 (68%), Gaps = 6/305 (2%) Strand=Plus/Minus Query 233143 CATAAAGTTCTTGAAGAGAAACGATATCACCAATATTGTAATCTTCCATTTCTTGCCAAG 233202 |||||||||||| ||| ||| | ||| |||| || || || ||||||||| | Sbjct 1086 CATAAAGTTCTTCAAGTGAAGTCACGTCAACAATGTTATATTCACGCATTTCTTGAATTG 1027 Query 233203 CTTCCATATTACCAGCCAGACATTCTTTCCACAGTTCAAAACCTGGGAATTTAGCATGTT 233262 |||| ||| ||| || | |||| ||||| | |||||| || || || ||| Sbjct 1026 CTTCAGGATTTCCACGCACAAATTCACGCCACAATGTAAAACCCGGAAACTTGATGTGTG 967 Query 233263 TAGATTTCTTAGTGTCACTACACAGTGTATCTGTCATATATTCGAGTTTATTGGAAGTAA 233322 |||||||| | | | ||||||| | |||| ||||| |||||||| ||||| | Sbjct 966 AAGATTTCTCATTCTTCTTACACAGCAGTTGCGTCAGATATTGTAGTTTATTTGAAGTGA 907 Query 233323 ATCCGAAAGTACGCTTTGCAATTTCAAGAGTATCGATATGTTTTACACCTGAGAATG-GC 233381 |||| || ||| |||||||| | ||||||||| | || || ||||||| | Sbjct 906 ATCCAAACTCTTTCTTAGCAATTTCCAAAGTATCGATTACTCTT--ACTGGAGAATGCGG 849 Query 233382 TT--CATATTATGGAAGATCATACGAGCGCGGATCTTTGGAATATCGAACCGCTTACCAT 233439 || || | ||| | ||||| || || | |||||| || ||| || || |||||| Sbjct 848 TTTGAATCCTCTGGCA-ATCATTCGTGCTCTAATCTTTTTAAGATCAAAACGTCTACCAT 790 Query 233440 TTTGG 233444 | ||| Sbjct 789 TATGG 785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 747908348489240