Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_015265.1 Length=37236 Score E Sequences producing significant alignments: (Bits) Value seq248802 414 2e-111 seq159964 120 7e-23 >seq248802 Length=12257 Score = 414 bits (458), Expect = 2e-111 Identities = 746/1079 (69%), Gaps = 20/1079 (2%) Strand=Plus/Minus Query 15729 GCGAACTTGACCAGATAGCGGTCGGTGATGCGCTGGCGGAACGTCAGGTCTTCGAGCGGC 15788 ||||| || |||| |||| |||||| |||||||| || | ||||| ||||| |||||| Sbjct 3222 GCGAAGTTCGCCAGGTAGCTGTCGGTAATGCGCTGACGCAGGGTCAGATCTTCCAGCGGC 3163 Query 15789 GGGGCAGGGCAGAAGTCGTAATCGATGAAGCCCTGGCCGGCCTTGAGCGAATCCTTGTCG 15848 || | ||| ||||||| ||||| | || |||||| || || |||| | | Sbjct 3162 GGCACCGGGGTATAGTCGTAGTCGATATACAGCTTGCCGGCTTTCAGGCTCTCCTGGCTG 3103 Query 15849 TTCGCGCCCGGATCGAACCAGCATTCGCCGTCGATCAGGTAGCCGGCGGTCTTCCACGCG 15908 || |||| ||| ||||||| | | || | | ||| || |||||| | || | | Sbjct 3102 TTGGCGCTTTCGTCGTACCAGCAGTTGGCGCCCAGCAGATAACCGGCGTTGATCAGCTCA 3043 Query 15909 CGGAACTTCGCATTCACGCCATCGACGATGTCGCGCATCAGCGTGCGGC-TCATCGGCTG 15967 |||||||| || || | || ||| |||||||||| |||||| |||| ||| ||||| Sbjct 3042 CGGAACTTGGCGTTGATCCCGGCGATAATGTCGCGCACCAGCGT-CGGCGTCAGCGGCTT 2984 Query 15968 GTCGACGGCCCACATGTGCGCCTCGGCCATCGTGTCGGCGATCACCTGCGCACTGCGCAC 16027 |||| ||||||||| ||||| |||||||| |||||||||||||||||||| ||| Sbjct 2983 GTCGTTGGCCCACATATGCGCATCGGCCATGGTGTCGGCGATCACCTGCGCCGAGCGGGT 2924 Query 16028 ATAGTTCTCGAACGCCCACAGCTTGTCCTCGGAACAGGTGCGCGATCCCCATAGACGGTA 16087 |||| || || || ||||| ||| ||| ||||||||| ||||| | ||| | Sbjct 2923 GAAGTTTTCAAAGGCGAACAGCGGGTCATCGCTACAGGTGCGGTTGCCCCAGAAGCGGAA 2864 Query 16088 ACCGTCCGCGTTCACCAGCGTGGTCACTTCGTGGCT--GTTCAGGTAGCCCGCGTCGGTG 16145 |||||| | | ||||||||| || ||||| ||||| | || ||||| Sbjct 2863 ACCGTCTTTGCGGATCAGCGTGGTGAC--GCTGGCTTCATTCAGCAGATCGGCATCGGTC 2806 Query 16146 TTCGGGTCCTGCAGGTCCCAGAACACGTCGCGGCTG--ATGCCCGTGACGCCGTTGACCA 16203 | | ||||||||||||||| || || ||| | | ||| || ||||||||||| Sbjct 2805 CCCACCTGCTGCAGGTCCCAGAATAC--CGAGGCGGAAACGCCGGTCACGCCGTTGACGC 2748 Query 16204 CGACGTTCGAGATCGTCTTGTGCCAGCCGATCTCTTCGTCGATCTTCGCGCGCATGCCGA 16263 |||||||||| | || || ||||||||| | || | ||||| || ||||||| ||||| Sbjct 2747 CGACGTTCGACAGGGTTTTATGCCAGCCGCTGTCGTTATCGATTTTGGCGCGCAGGCCGA 2688 Query 16264 GCGCGCGCGCCGTTGCCCACGTGATGTCCTCGGCGTTGGTCGTGGTGTTCCAGTTCACGA 16323 | ||||| || || || | | | ||| | ||| ||||| |||||||||| || | Sbjct 2687 GGGCGCGGGCGGTGGCATAGGCAGTTTCCGCCGCGCTGGTCACGGTGTTCCAGGCGACAA 2628 Query 16324 AATCCGGCCAGATCGTCATCAGCTCACGCTGGCCGAAGTTCGCGCGGTAGGTGGTCGCTT 16383 | || ||||||||| ||||||||| ||||||| |||||| |||| || || ||| | Sbjct 2627 AGTCGGGCCAGATCACCATCAGCTCGCGCTGGCTGAAGTTTTCGCGATACTTGAGCGCAT 2568 Query 16384 CCTCCTT--CGTCTGTGCGCCGAACGCGCTGATGTAGCCGAAGCCGCGCAGCTTCTGCGC 16441 | ||| ||| | |||| | || ||| ||||||||| ||||||||| ||| Sbjct 2567 C--GCTTACCGTTTTACAGCCGTAAGCCGAGATATAGCCGAAGGCGCGCAGCTGCTGGCA 2510 Query 16442 GATCGTCGCAAGCTCGGACGCGACGGGCAGGGTGTCGAGGCCTGGACAACCGAGCACGCG 16501 ||| | ||| ||| ||| || || ||| | || || || || ||||| | || Sbjct 2509 GATTGCCGCCAGCGCGGTGGCCACTTCCAGCGAATCCAGCCCCGGCACGCCGAGAATACG 2450 Query 16502 CGGCTTCACGCCGAGGCGGCTCTTCGCGGCGAGCAGCGCCTTCATACCGGTGTACTGACC 16561 |||||| ||||| ||| | ||| ||| ||||||||||| ||||| |||||||| | || Sbjct 2449 CGGCTTAACGCCAAGGTCGGTCTGCGCCGCGAGCAGCGCTTTCATCCCGGTGTAGCGGCC 2390 Query 16562 GTCCGCGGTGGTCGTGCCGATCACGTTGCTGGTCGTGGTATCCGGATC--CTTGCCGGTC 16619 || || | | |||||| | |||||| ||||| ||| || ||| | || Sbjct 2389 GTTAGCATCGCTGCCGCCGATGATATTGCTG---GTGGTTGCCGCTTCGTCTTCACCCTC 2333 Query 16620 GGC-ACACGCACCGCGACGATCAGCGGGGACGTCTGCGCGGCGATCGCATCGAGCGAACG 16678 | || |||||| | || | | ||| |||| |||| ||||| | |||| Sbjct 2332 CTCAACGCGCACCACCACCGTTACCGGCTTGCTCTGGTCGGCAATCGCCTGCAGCGCTTT 2273 Query 16679 CGCGAGCGTGCCCTTCGTGCCTGCCTTGCCGATCGCTGCCTGCACGTCGGTGATGAGAAC 16738 ||| |||||||| | || || || || | ||| |||||||||||||| || || || Sbjct 2272 CGCCAGCGTGCCGCTGACACCGGCTTTCCCCACCGCCGCCTGCACGTCGGTAATCAGCAC 2213 Query 16739 GGGACGGTTTTCGGGGAAGGTGGCCGCATCGGCGTCGTCGGCCGTGCTGACCAGGCCGA 16797 || ||| ||||| || ||||| || || | || |||| ||||| ||||| Sbjct 2212 CGGCGTGTTGAGCGGGAATACGGTGGCATCAGCATCCGCTGCAGTGCAGACCATGCCGA 2154 >seq159964 Length=5345 Score = 120 bits (132), Expect = 7e-23 Identities = 286/427 (67%), Gaps = 9/427 (2%) Strand=Plus/Minus Query 32318 AACGGATCCGCAACGTCCTGAAGAGCCGGCAGATCGGCGCGACCTGGTACTTCGCGCGCG 32377 ||| | | |||||| |||| || ||||| |||||||| || |||||||| || ||| | Sbjct 1027 AACAGGTGCGCAACATCCTCAAAAGCCGCCAGATCGGTGCCACCTGGTATTTTGCGTTTG 968 Query 32378 AGGCGTT---GCTCGACGCGCTGAACACAGGCCGCAATCAAATCTTCCTGTCGGCCAGCA 32434 | ||||| | | || |||| | ||| | || || || || || || || | Sbjct 967 AAGCGTTTGAGAATGCCGTACTGA---CGGGCGACCCGCAGATTTTTCTTTCTGCGAGTA 911 Query 32435 AGGCACAGGCGCACGTGTTCCGCCAGTACATCGTGCAGTTCGCGAAAGACGCGGTCGACG 32494 |||| |||||| | ||||||||| |||||| ||| | ||||| | | | | | Sbjct 910 AGGCGCAGGCGGAGGTGTTCCGCTCGTACATTGTGAACATCGCGGAGCAGTATTTTGGCA 851 Query 32495 TCGAGCTGAAGGGCGACCCGATCGTGCTGCCGAACGGTGCGACGCTGTACTTCCTCGGCA 32554 || ||||| ||| | || ||| |||| ||||||||| ||| |||||| || Sbjct 850 TCACGCTGACGGGTAATCCTATCCGGCTGAGCAACGGTGCGGAACTGCGCTTCCTGTCCA 791 Query 32555 CCAACGCGCGCACTGCGCAGAGCTACCACGGCAACCTGTATTTCGACGAGTACTTCTGGG 32614 | ||| ||| |||||| |||| ||| | ||||| | ||| || || ||||||| Sbjct 790 CTAACAAAAACACCGCGCAGTCCTACAGCGGGCATCTGTACTGCGATGAATATTTCTGGG 731 Query 32615 TGCCGCGC-TTCCAGGAGCTGCGCAAGGTCGCCTCCGGCATGGCGATTCACGACCAGTGG 32673 ||||| | || || | ||| | | || ||| || |||||| | ||||| | ||| Sbjct 730 TGCCGAACTTTGCACG-CCTGAACGAAGTGGCCAGCGCCATGGCCACGCACGATAAATGG 672 Query 32674 CGGCAGACGTATTTCTCGACGCCGTCGAGCCTCGCGCACGACGCTTATCCGTTCTGG-TC 32732 || ||||| || || ||||| ||| | | ||| | || |||||||||||| | Sbjct 671 CGCACCACGTACTTTTCCACGCCATCGGCCAAAACCCACCAGGCCTATCCGTTCTGGACC 612 Query 32733 GGGCAAG 32739 ||| ||| Sbjct 611 GGGGAAG 605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118327939135196