Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_015266.1 Length=40555 Score E Sequences producing significant alignments: (Bits) Value seq248802 361 1e-95 seq170488 145 2e-30 seq159964 100 7e-17 seq133940 98.7 3e-16 seq133974 96.9 9e-16 >seq248802 Length=12257 Score = 361 bits (400), Expect = 1e-95 Identities = 886/1326 (67%), Gaps = 29/1326 (2%) Strand=Plus/Minus Query 13953 GCCGCTCATGCCGCCGCCCTGGTAGTCCTCCATCTTTCGCGACAGCTTCGGGAGCTGGAT 14012 |||| ||||||||||||| |||| || | ||| |||| ||||||||| ||| | Sbjct 3388 GCCGTTCATGCCGCCGCCGCGGTAAGGGTCGAGCTTGCGCGCCAGCTTCGGCAGCGTCAG 3329 Query 14013 TTCCTTCGTCTCGCCGACAAAGTTGGTGCCGTTGTGAAACAGGTTGAAGCCTTTCAGCTT 14072 | || | | || | || || || | | || ||||| || | | |||||| || Sbjct 3328 TGAGGTCACCACACCCTGATAGCTGTTGGCATCGTTAAACAAATTCAGGTATTTCAGTTT 3269 Query 14073 GCGGGGCATACCCATGTGTGTGACTCCTGGTTAGGCCGACACGCGCGAGGCGAAATCGGC 14132 |||| ||||| | || ||||| ||| ||| | |||||| | || Sbjct 3268 CTTAGGCAGTGCCATGAGGGTTTCTCCT---TAGCTGTTCACAGAAGCGGCGAAGTTCGC 3212 Query 14133 GAGATAGCGATCGGTGATGCGCTGGCGCAGCTTCAGGTTTTCGAGCGGCGGGACCGGCGT 14192 || |||| ||||| |||||||| ||||| |||| | ||| |||||||| ||||| || Sbjct 3211 CAGGTAGCTGTCGGTAATGCGCTGACGCAGGGTCAGATCTTCCAGCGGCGGCACCGGGGT 3152 Query 14193 GTAGTCGTAGTCGATCCATGTACC--GCCCGACGTCAG-CTCGTCGGTCGTGTTCG-GCT 14248 |||||||||||||| || | | ||| | |||| ||| | | | |||| | ||| Sbjct 3151 ATAGTCGTAGTCGAT--ATACAGCTTGCCGGCTTTCAGGCTCTCCTGGC-TGTTGGCGCT 3095 Query 14249 CCGGGTCGTACCAGGCGCCGCCACCGATCAGCTCGCCGACCGAGACTTCGCGG-CGGAAC 14307 | ||||||||| | | | || | ||| | ||| | || | || |||||| Sbjct 3094 TTCG-TCGTACCAGCAGTTGGCGCCCAGCAGATAACCGGCGTTGA-TCAGCTCACGGAAC 3037 Query 14308 CACGCGTTGATGTTCTCGATGATGTcgcgcgcgcgcgACGGGTTGAGCGGGCCGTCGACG 14367 |||||||| |||| ||||||||| | ||| ||| | ||||| |||| | Sbjct 3036 TTGGCGTTGATCCCGGCGATAATGTCGCGCACCAGCGTCGGCGTCAGCGGCTTGTCGTTG 2977 Query 14368 ACGCCCATCTGTTCCTCGGCGATCGTGTCAGCGATCACCTGTGCCGAACGCGTGTAGTTC 14427 | | ||| || | ||||| || ||||| ||||||||||| ||||| || ||| |||| Sbjct 2976 GCCCACATATGCGCATCGGCCATGGTGTCGGCGATCACCTGCGCCGAGCGGGTGAAGTTT 2917 Query 14428 TCGAAGAAGAACTTGCCGTCCGCGTCGCACGTGCGCGAGCCCCAGAAACGGAAGCCGTTT 14487 || ||| |||| ||| || || ||||| ||||||||| ||||| |||| | Sbjct 2916 TCAAAGGCGAACAGCGGGTCATCGCTACAGGTGCGGTTGCCCCAGAAGCGGAAACCGTCT 2857 Query 14488 CGGTTGACGAGCGTGGTGAC-CTGGTTCTCGTTCAGATAGCCGGCGTCCGTTGCCGGGTC 14546 | || ||||||||||| |||| | || ||||| |||| || || || | Sbjct 2856 TTGCGGATCAGCGTGGTGACGCTGGCT-TCATTCAGCAGATCGGCATCGGTCCCCACCTG 2798 Query 14547 TTGCAAATCCCACGACACGTCCGCGCTGATGCCGGTCACGCCGTTGACGACGACGTTCGA 14606 |||| ||||| | || ||| | ||||||||||||||||||| |||||||||| Sbjct 2797 CTGCAGGTCCCAGAATACCGAGGCGGAAACGCCGGTCACGCCGTTGACGCCGACGTTCGA 2738 Query 14607 CAGCGTCTTGTGCCAGCCGATGTCGTTGTCGATCTTCGCGCGCAGGCCCGCCGCGATCGC 14666 ||| || || ||||||||| ||||||| ||||| || |||||||| |||| | ||| Sbjct 2737 CAGGGTTTTATGCCAGCCGCTGTCGTTATCGATTTTGGCGCGCAG----GCCGAGGGCGC 2682 Query 14667 CGGCGCCGGGAT-GGC---GACGGTCGAGTTCGTTATGTCGTCCCAGCCGAGCCAATCCG 14722 |||| || || ||| | | || | | || | | || |||| ||| | || | Sbjct 2681 GGGCGGTGGCATAGGCAGTTTCCGCCGCGCTGGTCACGGTGTTCCAGGCGACAAAGTCGG 2622 Query 14723 GCCAGATCACCATGATTTCGCGCTGGCCGAACTGCTTGCGGTACGCGACCGC--CTCTTC 14780 ||||||||||||| | |||||||||| ||| | | ||| ||| || ||| | ||| Sbjct 2621 GCCAGATCACCATCAGCTCGCGCTGGCTGAAGTTTTCGCGATACTTGAGCGCATCGCTTA 2562 Query 14781 CTTCGTCTTGCAGCCGTGCGCGGCGACGTACACCATCGCGCGCAGCGATTGCGCGATCGT 14840 | ||| || ||||||| || | || || | | ||||||||| || ||| | Sbjct 2561 C--CGTTTTACAGCCGTAAGCCGAGATATAGCCGAAGGCGCGCAGCTGCTGGCAGATTGC 2504 Query 14841 CGCGAATGCTGCGGCGACGGGCTGCGTGTCGAGGCCGGGCGCGACCAGGATGCGCGGCTT 14900 ||| | || | ||| || | ||| || || || ||| || | || || |||||||| Sbjct 2503 CGCCAGCGCGGTGGCCACTTCCAGCGAATCCAGCCCCGGCACGCCGAGAATACGCGGCTT 2444 Query 14901 CACGGCGAGCTTCCCCTGCGCGGCCAGCAACGCCTTCATGCCGGTGTATTTGCCGTCCGG 14960 ||| | || | |||||| || |||| ||| ||||| |||||||| ||||| | Sbjct 2443 AACGCCAAGGTCGGTCTGCGCCGCGAGCAGCGCTTTCATCCCGGTGTAGCGGCCGTTAGC 2384 Query 14961 CGTGACGGTGCCGATGACGTTCGCGGTCGTCTCGGCTTCGTCCTTTCCTTCCGCGACGCG 15020 | | |||||||| || ||| || | |||||||| | || ||| | ||||| Sbjct 2383 ATCGCTGCCGCCGATGATATTGCTGGTGGTTGCCGCTTCGTCTTCACCCTCCTCAACGCG 2324 Query 15021 CACGACGACGGTGACGGGCTTCGTCTGCTTGCCGATCGCGTCGAGCG-TGCGGCGCAGCG 15079 ||| || || || || ||||| |||| | | | ||||| | |||| | || ||||| Sbjct 2323 CACCACCACCGTTACCGGCTTGCTCTGGTCGGCAATCGCCTGCAGCGCTTTCGC-CAGCG 2265 Query 15080 TGCCCTTCGTGCCGGCCTTGCCAAGCGCCGCGATGACGTTCGTCAGCAGCACCGGCGTGT 15139 |||| | ||||| || || | |||||| |||| || | |||||||||||||| Sbjct 2264 TGCCGCTGACACCGGCTTTCCCCACCGCCGCCTGCACGTCGGTAATCAGCACCGGCGTGT 2205 Query 15140 CGAGCGGGAACGTCGCCGGGTCGGCGNNNNNNNNNNTGCAGACGATGCCGAGCACGGCCG 15199 ||||||||| | | || || ||||||| ||||||| | | | Sbjct 2204 TGAGCGGGAATACGGTGGCATCAGCATCCGCTGCAGTGCAGACCATGCCGACAATAGAGG 2145 Query 15200 TGGAGACCGTGCGAATCGGCCGGCCGCCTTCGTTGATTTCGATGACGCGTACGCCGTGGT 15259 |||| |||||| ||| ||| || || |||||||| | ||||||||||||||||| Sbjct 2144 TGGATACCGTGGAAATACTGCGGGTTCCGTCATTGATTTCAACGACGCGTACGCCGTGGT 2085 Query 15260 GGTAAT 15265 | |||| Sbjct 2084 GATAAT 2079 >seq170488 Length=741 Score = 145 bits (160), Expect = 2e-30 Identities = 230/327 (70%), Gaps = 2/327 (1%) Strand=Plus/Plus Query 35662 TCGTCCCATGAGAAGCCGGTCTTCTTC-CGGAATCCGACGATGACGATTCGCTCACGATG 35720 |||||||| |||| |||||| |||| ||||| || ||||||| ||||||||| || || Sbjct 416 TCGTCCCAGCGGAAGGCGGTCT-CTTCGCGGAAGCCCACGATGATGATTCGCTCGCGGTG 474 Query 35721 CTGAGGGGTGAAGTGCTGGCCGTCGATGATCTTGTAATGGACGTCATACTGGAGCTCGTC 35780 ||| || |||||| | ||||| ||||| |||| ||| |||| ||| ||||||| Sbjct 475 CTGGGGCCCGAAGTGTTTGCCGTTGATGACCTTGGCATGCACGTGGTACCCAAGCTCGTT 534 Query 35781 ACGCAACGTTTGCAAGATAACGGCAAAAGTGTTGCCTTTATCGTGCGACAACAAATTCTT 35840 || | | || ||| | || || || || ||||| || || |||||| Sbjct 535 CTTCAGCACGTCCATGATGGTCGAGAAGGTTCGACCCTTGTCGTGGCTCATCAGATTCTT 594 Query 35841 CACGTTTTCCAACACGAAGGCCGCAGGTCGCTTCGCTGCGATGATCCGGGCTACGTCGAA 35900 |||||| |||| | ||| || ||| ||||| || ||||||| || || ||||| || Sbjct 595 CACGTTCTCCAGAAGGAAAGCGCGAGGACGCTTGGCATCGATGATGCGTGCCACGTCAAA 654 Query 35901 AAATAGAGTGCCCTGAGTAGTGCACTCGAAGCCGTGCGGGCGGCCCAGTGAGTTCTTTTT 35960 || | ||||| || || || | ||| |||||||| || || || |||||||| || Sbjct 655 GAACAACGTGCCTTGGGTCTTGTCCGAGAAACCGTGCGGACGACCGAGAGAGTTCTTCTT 714 Query 35961 GCTTACTCCCGCGATACTAAACGGCTG 35987 | || |||||||| |||||||| Sbjct 715 GGACACACCCGCGATGGAGAACGGCTG 741 Score = 91.5 bits (100), Expect = 4e-14 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 35236 ATCACTGGCATCACGACGCTGTTACCAAATTGCCGGTACGCCTGCGTATCACTAACGGGG 35295 ||||| || | || ||| || || || ||| ||| || |||| || ||| ||| Sbjct 6 ATCACAGGGACGACCACGGAATTGCCGAACTGCTTGTAGGCGCGCGTGTCCGAAACCGGG 65 Query 35296 ATTCGGTACGTATCCGGAAAGCCCATAAGCCGCGCACATTCGCGAGGCGTCAGGCGCCGC 35355 || ||| | | || || ||||| || |||||||||||||| |||||||| | || Sbjct 66 ATCCGGAAATTGTCATCGAACCCCATCAGGCGCGCACATTCGCGGGGCGTCAGCCTGCGA 125 Query 35356 GGACGCTTACCTT--TTCCTTGGTAGACGAGAATTTCCGAGCCGTCCTTGTGGTATCGAG 35413 ||| ||| ||| || ||| ||| ||| ||||||||||||||||||| || || | Sbjct 126 GGATTCTT--CTTCGCACCCTGGGAGATGAGGATTTCCGAGCCGTCCTTGTAATAGCGCG 183 Query 35414 CCGACAGCGTACG 35426 | |||||||| || Sbjct 184 CGGACAGCGTGCG 196 >seq159964 Length=5345 Score = 100 bits (110), Expect = 7e-17 Identities = 278/421 (66%), Gaps = 4/421 (1%) Strand=Plus/Minus Query 28885 CAGCAGACGCGCAATATCCTGAAGTCACGGCAGATCGGCGCCACCTGGTATTTCGCACGC 28944 || ||| |||||| ||||| || || |||||||| |||||||||||||| || Sbjct 1028 CAACAGGTGCGCAACATCCTCAAAAGCCGCCAGATCGGTGCCACCTGGTATTTTGCGTTT 969 Query 28945 GAGGCATTCGTCGACGCGCTCGATACCGGCCGCAACCAGATTTTTCTATCGGCCAGCAAA 29004 || || || | | || | || ||| | ||||||||||| || || || || Sbjct 968 GAAGCGTTTGAGAATGCCGTACTGACGGGCGACCCGCAGATTTTTCTTTCTGCGAGTAAG 909 Query 29005 GCACAGGCGCACGTCTTCAAACAGTACATCGTGCAGTTCGCTCGTGACGTGGCC-GACGT 29063 || |||||| | || ||| |||||| ||| | |||| | | || | | | Sbjct 908 GCGCAGGCGGAGGTGTTCCGCTCGTACATTGTGAACATCGCG-GAGCAGTATTTTGGCAT 850 Query 29064 TGAGCTGACGGGCGATCCGATCATTCTGCCGAACGGTGCGACGCTGTACTTCCTAGGGAC 29123 ||||||||| |||| ||| ||| ||||||||| ||| |||||| || Sbjct 849 CACGCTGACGGGTAATCCTATCCGGCTGAGCAACGGTGCGGAACTGCGCTTCCTGTCCAC 790 Query 29124 GAACTCGCGCACCGCGCAGTCGTATCACGGCAATCTGTACTTCGACGAATATTTCTGGGT 29183 ||| |||||||||||| || ||| ||||||||| ||| |||||||||||||| Sbjct 789 TAACAAAAACACCGCGCAGTCCTACAGCGGGCATCTGTACTGCGATGAATATTTCTGGGT 730 Query 29184 GCCGAA-GTTCCGCGAGCTGAATACCGTTGCGTCGGGCATGGCGATGCACAAACGCTGGC 29242 |||||| || | || ||||| || || | |||||| | |||| | |||| Sbjct 729 GCCGAACTTTGCACG-CCTGAACGAAGTGGCCAGCGCCATGGCCACGCACGATAAATGGC 671 Query 29243 GGCTGACCTACTTCAGCACGCCGTCGAGTACGACCCATGAAGCCTACGCGTTCTGGAGCG 29302 | || ||||| |||||| ||| | ||||| | ||||| ||||||||| || Sbjct 670 GCACCACGTACTTTTCCACGCCATCGGCCAAAACCCACCAGGCCTATCCGTTCTGGACCG 611 Query 29303 G 29303 | Sbjct 610 G 610 >seq133940 Length=1597 Score = 98.7 bits (108), Expect = 3e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35836 TTCTTCACGTTTTCCAACACGAAGGCCGCAGGTCGCTTCGCTGCGATGATCCGGGCTACG 35895 || || |||||||||| |||||| || ||| || || ||| || || || || Sbjct 510 TTTTTAACGTTTTCCAGCACGAAAATGGCCGGTTTTTTGGCCCGGATAATACGCGCCACA 569 Query 35896 TCGAAAAATAGAGTGCCCTGAGTAGTGCACTCGAAGCCGTGCGGGCGGCCCAGTGAGTTC 35955 || || || || |||||||| | ||| || || || || | || ||||| || ||| Sbjct 570 TCAAAGAACAGCGTGCCCTGCGCCTCGCATTCAAAACCATGAGCACGACCCAGCGAATTC 629 Query 35956 TTTTTGCTTACTCCCGCGATACTAAACGGCTGGCAAGGGAAGCCGGCAAGCAAGACGTCA 36015 |||||||| || ||||||| || ||||| ||||| ||||| || || || | ||| ||| Sbjct 630 TTTTTGCTCACACCCGCGAGGCTGAACGGTTGGCAGGGGAAACCTGCCAGAAGGACATCA 689 Query 36016 TGAGTTGGCACA 36027 ||| |||||| Sbjct 690 TGATCCGGCACA 701 >seq133974 Length=14046 Score = 96.9 bits (106), Expect = 9e-16 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 35805 AAAAGTGTTGCCTTTATCGTGCGACAACAAATTCTTCACGTTTTCCAACACGAAGGCCGC 35864 ||| || ||||||||||| || | | || || ||||| || | ||||| | || Sbjct 12925 AAACGTTTTGCCTTTATCATGACTCTTTAGGTTTTTGACGTTCTCAAGAACGAACACGGC 12984 Query 35865 AGGTCGCTTCGCTGCGATGATCCGGGCTACGTCGAAAAATAGAGTGCCCTGAGTAGTGCA 35924 || || || || |||||||| || || || ||||| ||||| ||||| | || Sbjct 12985 CGGACGTTTAGCACGGATGATCCTAGCCACATCAAAAAACAGAGTTCCCTGCGCTTCACA 13044 Query 35925 CTCGAAGCCGTGCGGGCGGCCCAGTGAGTTCTTTTTGCTTACTCCCGCGATACTAAACGG 35984 || |||||||| | |||||| || | || || ||||| || || || | || || || Sbjct 13045 TTCAAAGCCGTGAGCGCGGCCGAGGGCATTTTTCTTGCTGACGCCGGCAAGGCTGAAAGG 13104 Query 35985 CTGGCAAGGGAAGCCGGCAAGCAAGACGTCATG 36017 ||| || ||||| |||||||||| || ||||| Sbjct 13105 CTGACACGGGAAACCGGCAAGCAGTACATCATG 13137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128885776384234