Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_015273.1 Length=32317 Score E Sequences producing significant alignments: (Bits) Value seq248802 405 1e-108 >seq248802 Length=12257 Score = 405 bits (448), Expect = 1e-108 Identities = 894/1338 (67%), Gaps = 27/1338 (2%) Strand=Plus/Minus Query 11998 GCCATTCGTGCCGCCGCCGCGCCATGCTTCCATCTTGCGCGAGAGCTTCGGCAGCCCGAC 12057 ||| ||| ||||||||||||| | | || | |||||||| |||||||||||| | Sbjct 3388 GCCGTTCATGCCGCCGCCGCGGTAAGGGTCGAGCTTGCGCGCCAGCTTCGGCAGCGTCAG 3329 Query 12058 TTCTGCAATCTGTCCGGCGAAGTTTTCGCCGTTCTGGAACAGATTGAAGTTCTTCAGTTT 12117 | | | | || || | | | | | | |||| ||| | || |||||||| Sbjct 3328 TGAGGTCACCACACCCTGATAGCTGTTGGCATCGTTAAACAAATTCAGGTATTTCAGTTT 3269 Query 12118 CTTCGGCAATGCCATGTTCATTTACTCCCTAGTTATGCCGTGACGCGCGCGGCGAAATCG 12177 ||| |||| ||||||| ||| |||| ||| | | | || ||| ||||| | Sbjct 3268 CTTAGGCAGTGCCATGAGGGTTT-CTCCTTAGCTGTTCACAGAAGCG----GCGAAGTTC 3214 Query 12178 GCGAGGTAACGGTCGGTGATGCGTTGGCGCAGCATCAGGTTTTCGATCGGCGGAACGGGC 12237 || ||||| | |||||| ||||| || ||||| |||| | ||| | |||||| || || Sbjct 3213 GCCAGGTAGCTGTCGGTAATGCGCTGACGCAGGGTCAGATCTTCCAGCGGCGGCACCGGG 3154 Query 12238 GTGTAGTCGTAATCGATCGCCAGCTTGCCGGCCTTGAGCGATTCGACGGGGTTCGCGCTG 12297 || |||||||| ||||| |||||||||||| || || || | ||| ||||| Sbjct 3153 GTATAGTCGTAGTCGATATACAGCTTGCCGGCTTTCAGGCTCTCCTGGCTGTTGGCGCTT 3094 Query 12298 TCGTCGTACCAAGCCG-AGCCGCCGAGCAGATAGCCGTTTGCGATCAGCTCGCGGAATTT 12356 |||||||||| ||| | | |||| |||||||| ||| ||||||||| ||||| || Sbjct 3093 TCGTCGTACC-AGCAGTTGGCGCCCAGCAGATAACCGGCGTTGATCAGCTCACGGAACTT 3035 Query 12357 CGCGTTGATGCTTTCGATCATGTCTTTCACGATCGACGGGTGCATCGGCTTGTCGACATA 12416 |||||||| | |||| ||||| ||| | || ||| || |||||||||| Sbjct 3034 GGCGTTGATCCCGGCGATAATGTCGCGCACCAGCGTCGGCGTCAGCGGCTTGTCGTTGGC 2975 Query 12417 AACCATGTGTGCTTCCGCCATCGTGTCGGCGAGCACTTGCGCGGTGCGCGTGTAGTTCTC 12476 ||| || || || ||||| |||||||||| ||| ||||| | ||| ||| |||| || Sbjct 2974 CCACATATGCGCATCGGCCATGGTGTCGGCGATCACCTGCGCCGAGCGGGTGAAGTTTTC 2915 Query 12477 GAATGCGAACAGCGGATCATCCGAGCAGGTGCGCGAACCCCAGAAGCGATAGCCCGTC-G 12535 || ||||||||||| ||||| |||||||| ||||||||||| | ||||| Sbjct 2914 AAAGGCGAACAGCGGGTCATCGCTACAGGTGCGGTTGCCCCAGAAGCG-GAAACCGTCTT 2856 Query 12536 AGTTGATGAGCGTCGTCACATCGTTCTCGTTGAGGTAGCCGGCATCGGTCGCGGGGTCTT 12595 | ||| ||||| || || | || || || ||||||||||| | | | Sbjct 2855 TGCGGATCAGCGTGGTGACGCTGGCTTCATTCAGCAGATCGGCATCGGTCCCCACCTGCT 2796 Query 12596 GCAAGTCCCAGAAAACATCCTTGCTGATA--CCCGTAACGCCATTGATGCCGACATTCGA 12653 ||| ||||||||| || | || || | || || ||||| |||| |||||| ||||| Sbjct 2795 GCAGGTCCCAGAATAC--CGAGGCGGAAACGCCGGTCACGCCGTTGACGCCGACGTTCGA 2738 Query 12654 AATCGTCTTGTGCCAGCCCGTTTCCTCGTCGATCTTGGCGCGCAAGCCGAGCGCGATCGC 12713 | || || |||||||| | || | ||||| |||||||||| |||||| ||| || Sbjct 2737 CAGGGTTTTATGCCAGCCGCTGTCGTTATCGATTTTGGCGCGCAGGCCGAGGGCGCGGGC 2678 Query 12714 GGTCGCGTCNNNNNNNNNNNNNNNNNNNNNNNNNNTGTCCCATCCGAGGAAATCCGGCCA 12773 ||| || | ||| ||| ||| || || ||||| Sbjct 2677 GGTGGCATAGGCAGTTTCCGCCGCGCTGGTCACGGTGTTCCAGGCGACAAAGTCGGGCCA 2618 Query 12774 CATCACCATCAGCTCGCGTTGGCTGAATTGCTGGCGATAGGCCATCGC--CGCTTCCTTG 12831 ||||||||||||||||| |||||||| | | |||||| | ||| ||||| | Sbjct 2617 GATCACCATCAGCTCGCGCTGGCTGAAGTTTTCGCGATACTTGAGCGCATCGCTTACCGT 2558 Query 12832 TTCGCCGCGCCGTTCGCCGACACATAGCCGAACCCGCGCAGCTTTTGTGCGAGCGTGCCG 12891 || | ||||| ||||| | ||||||||| ||||||||| || || || ||||| Sbjct 2557 TTTAC--AGCCGTAAGCCGAGATATAGCCGAAGGCGCGCAGCTGCTG-GC-AGATTGCCG 2502 Query 12892 --AGGGCCGCCGCGACAGGCTGCGTATCGAGGCCGGGAGCGCCGAGAATGCGCGGCTTGA 12949 || || | || || | ||| ||| || || || |||||||||| |||||||| | Sbjct 2501 CCAGCGCGGTGGCCACTTCCAGCGAATCCAGCCCCGGCACGCCGAGAATACGCGGCTTAA 2442 Query 12950 TGCCGAGTTTCGATTGCGCCGAGAGTAGCGCTTGCATGCCCGTATAAGCGCCCGTCACGG 13009 ||| || | | ||||||| ||| ||||||| ||| || || | |||| |||| | | Sbjct 2441 CGCCAAGGTCGGTCTGCGCCGCGAGCAGCGCTTTCATCCCGGTGT-AGCGGCCGTTA--G 2385 Query 13010 CGTCGGGTTTGCCGATCACGTTGCTCGNNNNNNNNNNNNNNNNNNNNCCTTCAGCGACGC 13069 | ||| |||||| | ||||| | || || | |||| Sbjct 2384 CATCGCTGCCGCCGATGATATTGCTGGTGGTTGCCGCTTCGTCTTCACCCTCCTCAACGC 2325 Query 13070 GCACGACGACAGTGACGGGCTTCGCCTGTGCGGCCATCGCTTGAAGCGTGCGCGCGAGCG 13129 |||| || || || || ||||| ||| |||| ||||| || |||| ||| |||| Sbjct 2324 GCACCACCACCGTTACCGGCTTGCTCTGGTCGGCAATCGCCTGCAGCGCTTTCGCCAGCG 2265 Query 13130 TGCCCTTGTCGCCGGCCTTGCCGATCGCCGATTGAATGTTCGTCAGCAGCACGGGCGTAT 13189 |||| || | ||||| || || | ||||| || | || || | |||||| ||||| | Sbjct 2264 TGCCGCTGACACCGGCTTTCCCCACCGCCGCCTGCACGTCGGTAATCAGCACCGGCGTGT 2205 Query 13190 CGAGCGGGAACATCGAGGCGTCAGCATCGAGGGCGGTCGCGACGAGGCCGACAACGGCCG 13249 ||||||||| | | ||| |||||||| || || ||| | |||||||| | | Sbjct 2204 TGAGCGGGAATACGGTGGCATCAGCATCCGCTGCAGTGCAGACCATGCCGACAATAGAGG 2145 Query 13250 TTGATACGGTGCGAATCGGGCGCGTGCCTTCGTTAATTTCGAGTACGCGCACGCCGTGAT 13309 | ||||| ||| ||| ||| || || || || ||||| | ||||| |||||||| | Sbjct 2144 TGGATACCGTGGAAATACTGCGGGTTCCGTCATTGATTTCAACGACGCGTACGCCGTGGT 2085 Query 13310 GGTAGTCAGTAGGCATCT 13327 | || | ||| ||||| Sbjct 2084 GATA---ATTAGCCATCT 2070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 102680454522958