Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_015296.1 Length=157061 Score E Sequences producing significant alignments: (Bits) Value seq286911 109 5e-19 seq462907 100 3e-16 seq189010 98.7 1e-15 seq302683 91.5 1e-13 seq89823 89.7 5e-13 seq266160 86.0 6e-12 seq260686 86.0 6e-12 seq163857 82.4 8e-11 seq140129 82.4 8e-11 >seq286911 Length=6367 Score = 109 bits (120), Expect = 5e-19 Identities = 72/80 (90%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 137230 TGGCCCCGTAGCTCAGTGGTTAGAGCAGTCGACTCATAATCGATTGGTCGCTGGTTCAAG 137289 ||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 5791 TGGCCCCTTAGCTCAGTGGTTAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAA 5732 Query 137290 TCCAGCCAGGGTCACCAAAT 137309 ||||| ||| |||||||| Sbjct 5731 CCCAGCAGGGGCCACCAAAT 5712 >seq462907 Length=336 Score = 100 bits (110), Expect = 3e-16 Identities = 71/80 (89%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 137231 GGCCCCGTAGCTCAGT-GGTTAGAGCAGTCGACTCATAATCGATTGGTCGCTGGTTCAAG 137289 |||||| ||||||||| |||||||||| ||||||||||||| ||||||||||||||||| Sbjct 98 GGCCCCATAGCTCAGTTGGTTAGAGCACGCGACTCATAATCGCTTGGTCGCTGGTTCAAG 39 Query 137290 TCCAGCCAGGGTCACCAAAT 137309 |||||| ||| ||||| || Sbjct 38 TCCAGCTGGGGCCACCAGAT 19 >seq189010 Length=996 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 137230 TGGCCCCGTAGCTCAGTGGTTAGAGCAGTCGACTCATAATCGATTGGTCGCTGGTTCAAG 137289 |||||| |||||||||||| ||||||| ||||||||||||| |||||||||||||||| Sbjct 850 TGGCCCTTTAGCTCAGTGGTCAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAA 791 Query 137290 TCCAGCCAGGGTCA 137303 |||||| |||| || Sbjct 790 TCCAGCAAGGGCCA 777 >seq302683 Length=202 Score = 91.5 bits (100), Expect = 1e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 85412 ACTTTCATTTTACTACCCAGCATTTCAAAAACCTTACGATGTTTATCCAGTTCCGGCTTC 85471 |||||||| || | | |||| ||| || || || || || | | ||||||| | Sbjct 170 ACTTTCATCTTGCCAGCCAGATGTTCGAACACTTTGCGGTGCTCAACCAGTTCATTACGC 111 Query 85472 AGATATTCATTGTAGAAACCACGAGTACCTTCAGGATTCGCACAACCTTCCAAGATGAAG 85531 || || || ||||||||||| |||||| | || | | || ||| |||| |||||| Sbjct 110 AGGTACTCGTTGTAGAAACCGCGAGTAGAACCCGGCTGCACAGCACCGTCCAGCATGAAG 51 Query 85532 AAGACGTGCTTGTTGCCAGTTTGTTCACCATCCCAATGGTTTGGTGAGTT 85581 ||| |||||||||||||| ||| || ||||||||||| || ||||| Sbjct 50 AAGTAATGCTTGTTGCCAGTCGCTTCCCCGTCCCAATGGTTCGGAGAGTT 1 >seq89823 Length=2041 Score = 89.7 bits (98), Expect = 5e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 137631 TGTAGTTCAGTCGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCAAGTCCTGC 137690 |||||||||||||||||||||| ||||||||||||| |||||| | ||||| ||||| | Sbjct 499 TGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGT 558 Query 137691 CATCGTCGCCAAATTGAAGTAG 137712 || | |||||||| ||| || Sbjct 559 CAGAGGAGCCAAATTTAAGAAG 580 >seq266160 Length=9069 Score = 86.0 bits (94), Expect = 6e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 137631 TGTAGTTCAGTCGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCAAGTCCTGC 137690 |||||||||||||||||||||| ||||||||||||| |||||| | ||||| ||||| | Sbjct 374 TGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGT 315 Query 137691 CATCGTCGCCAAATT 137705 || | |||||||| Sbjct 314 CAGAGGAGCCAAATT 300 >seq260686 Length=13603 Score = 86.0 bits (94), Expect = 6e-12 Identities = 266/406 (66%), Gaps = 8/406 (2%) Strand=Plus/Minus Query 54213 GTTGATCTGAATACCATAGTCGATACGGCGTTCACGGTTCTCTTCAAGACCACGGTTGTT 54272 ||| | ||| | || ||||| ||| | || | ||||| |||||| || |||||||| Sbjct 5585 GTTCAGCTGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCCGCGGTTGTT 5526 Query 54273 CTTCAGGACCACAACATCATCAAATTGATAATGCCAGATAGGGATATAGCAAGTT-GCTG 54331 |||||| |||| | || | || |||||| || ||| || | || | | |||| Sbjct 5525 CTTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGG-TAGAACAGGGTCGCTG 5467 Query 54332 ATCCGCCACGAATACCGCCTTGAGAGCAAGACTTTAATGCCCCAGTCAGATATT--TTAT 54389 ||||| || | ||||| |||||||| ||||| | || | ||| | | | |||| Sbjct 5466 CACCGCCGCGCACGCCGCCCTGAGAGCAGGACTTCA---CCGCGGTCTGGAAGTGCTTAT 5410 Query 54390 -GAAAGGAACCAGGCCTGTGTGCACCATTTCACCTTTTCGGATAGGGCTACCGATGCCAC 54448 ||| |||| ||| ||||| | |||||| ||||| ||||| || | ||| Sbjct 5409 AGAACGGAATGCAGCCGGTGTGGAATGCTTCACCGCCGCGGATCGGGCTGCCCAGCGCAC 5350 Query 54449 GAATTGCTCCAACATCAAATCCGATCCCAGCGCGTTTGGATACATAATCAACAATACTTT 54508 | || || | | || ||||| || || || | || || || | ||||| Sbjct 5349 GGATGCGACCGGCGTTAATGCCGATACCGGCACGCTGAGAAACGTACTTCACAATCGCGC 5290 Query 54509 TGGCTGTAGCATTGATTGAGTCCAAAGTGTCACCGGTTTTGATAAGAACACAAGAACTGA 54568 ||| || || || || || || | |||| ||| | || || || || || |||| Sbjct 5289 TGGAGGTGGCGTTAATGGAATCAAGGCTGTCGCCGCACTCAATCAGTACGCAGGAGCTGA 5230 Query 54569 ATTGGCGGGTTGGGGTACGAACGCCGGACATGATGGGTGTTGGAAG 54614 | ||||| || ||||| || ||||||||||| || || || || || Sbjct 5229 ACTGGCGCGTCGGGGTGCGCACGCCGGACATAATTGGCGTCGGCAG 5184 >seq163857 Length=4767 Score = 82.4 bits (90), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 137631 TGTAGTTCAGTCGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCAAGTCCTGC 137690 |||||||||||||||||||||| ||||||||||||| |||||| | ||||| ||||| | Sbjct 4438 TGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGT 4379 Query 137691 CATCGTCGCCAAATT 137705 || | |||| ||| Sbjct 4378 CAGAGGAGCCAGATT 4364 >seq140129 Length=10074 Score = 82.4 bits (90), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 137631 TGTAGTTCAGTCGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCAAGTCCTGC 137690 |||||||||||||||||||||| ||||||||||||| |||||| | ||||| ||||| | Sbjct 7966 TGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGT 8025 Query 137691 CATCGTCGCCAAATT 137705 || | |||| ||| Sbjct 8026 CAGAGGAGCCATATT 8040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499331672774360