Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq73823 109 4e-18 seq234489 98.7 8e-15 seq174195 98.7 8e-15 seq152054 98.7 8e-15 seq158632 95.1 1e-13 seq103413 91.5 1e-12 seq220352 89.7 4e-12 seq116247 89.7 4e-12 seq61150 87.8 1e-11 seq46862 87.8 1e-11 >seq73823 Length=2501 Score = 109 bits (120), Expect = 4e-18 Identities = 149/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 550320 CACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTG 550379 ||||| |||||| ||| || ||| | | ||||||||| ||||||| | | Sbjct 583 CACCACCACAAATCTCAGCTGAAGTTCTGAAGAAAATGAAGAAAACAGCGGAAGACTACT 642 Query 550380 TTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAAC 550439 | ||| | ||| || || || || || |||||||| ||||| || || || | |||| Sbjct 643 TGGGTGAGCCAGTGACTGAAGCCGTTATCACTGTACCGGCATACTTCAACGATGCGCAAC 702 Query 550440 GTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATG 550499 ||||||| |||||||||||||| ||||| || || | | ||| ||||| ||||| | Sbjct 703 GTCAAGCAACTAAAGATGCTGGCCGTATCGCAGGGTTAGAAGTTAAGCGTATCATCAACG 762 Query 550500 AACCTACTGCTGCTGCACTTGCATATGG 550527 |||| ||||| || || || || ||||| Sbjct 763 AACCAACTGCCGCAGCGCTGGCGTATGG 790 >seq234489 Length=93356 Score = 98.7 bits (108), Expect = 8e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || | ||||| || || || || |||||||| || | || || || || |||| Sbjct 49591 ATGCTGTTGTCACTGTCCCTGCCTACTTCAATGACTCTCAGAGGCAGGCCACCAAGGATG 49650 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 ||||| ||||| || || |||||| | || |||||||| || || ||||||||||| Sbjct 49651 CTGGAGTGATTGCAGGCCTGAATGTTATGCGCATTATCAACGAGCCAACTGCTGCTGCTA 49710 Query 550518 TTGCATATGGACTTGATAA 550536 |||| ||||| ||||| || Sbjct 49711 TTGCTTATGGTCTTGACAA 49729 >seq174195 Length=20443 Score = 98.7 bits (108), Expect = 8e-15 Identities = 143/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 550326 AACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTC 550385 || ||||||| | ||| | || |||||||||| |||| || | || | || | Sbjct 9315 AAGAAATTTCTGCGATGATCTTGCAGAAAATGAAAAAAACGGCAGAAGATTACTTAGGAC 9374 Query 550386 AAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAG 550445 ||||||| | |||||||| ||||||||||| || || || || |||||||||||| Sbjct 9375 AAGAAGTATCTCGCGCAGTAATTACTGTACCAGCGTACTTCAACGATGCACAACGTCAAG 9434 Query 550446 CTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTA 550505 | || ||||| || || |||| || ||||| || ||||| ||||| || || | Sbjct 9435 CAACGAAAGAAGCGGGTGAGGTTGCCGGTCTTAAAGTAGAGCGTATCATCAACGAGCCAA 9494 Query 550506 CTGCTGCTGCACTTGCATATGG 550527 | ||||||||| | || || || Sbjct 9495 CCGCTGCTGCATTAGCGTACGG 9516 >seq152054 Length=931 Score = 98.7 bits (108), Expect = 8e-15 Identities = 197/289 (68%), Gaps = 16/289 (6%) Strand=Plus/Plus Query 552178 ATTTCAATGGTAAAAAAT-TAAATGAAAG-TGTTAATCCAGATGAGGCTGTTGCCTATGG 552235 ||||| ||||||| || || | |||| ||||||||||||||| || || || ||| Sbjct 651 ATTTCTTTGGTAAAGAACCTAGA--AAAGATGTTAATCCAGATGAAGCAGTCGCAGTTGG 708 Query 552236 TGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTGATGAAAAACTACAAAATATTGT 552295 ||| ||| |||||| || | | ||||| ||| |||| | || || || | Sbjct 709 TGCTGCAGTTCAAGGAGGTGTGCTTTCAGGA------GATG------TTAAAGATGTTTT 756 Query 552296 ACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAA 552355 | | | ||||| ||||| | || | || | || || | || ||||| |||||| Sbjct 757 ATTGCTTGATGTAACTCCATTGTCATTAGGAATTGAGACTATGGGCGGTATAATGACTTC 816 Query 552356 TCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTC 552415 || || ||| ||| || ||||||||| |||| | || || ||||| || Sbjct 817 ACTGATAAATAAAAACACAACTATTCCTACTAAACATAGTCAAGTTTTTTCAACAGCAGA 876 Query 552416 AGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAA 552464 |||||||||| | ||||| ||||| || ||| || |||| ||||||||| Sbjct 877 AGATAATCAATCCGCTGTAACAATACATATTCTTCAAGGTGAAAGAAAA 925 >seq158632 Length=4132 Score = 95.1 bits (104), Expect = 1e-13 Identities = 104/137 (76%), Gaps = 1/137 (1%) Strand=Plus/Minus Query 361705 ACCATAAGCTAATGAAGCAGCTGTTGGTTCGTTAATTATTTTAATAACATTGAGTCCCGC 361764 ||||||||||| || |||||||| ||||||||||| ||| | | || | | ||| || Sbjct 4018 ACCATAAGCTAGTGCTGCAGCTGTAGGTTCGTTAATAATTCTTTTGACTTCTAATCCTGC 3959 Query 361765 TATTTTTGATGCATCTAAAGTGGCTTGACGTTGTGCATCATTAAAATATGCAGGAACAGT 361824 ||| | |||||| || ||||| | || |||||||||||||| || ||||| || Sbjct 3958 AATTCTACCAGCATCTTTGGTTGCTTGTCTCTGAGCATCATTAAAATAGGCGGGAACTGT 3899 Query 361825 AATCACTGCTT-TTTCA 361840 ||| ||||||| ||||| Sbjct 3898 AATAACTGCTTCTTTCA 3882 >seq103413 Length=2056 Score = 91.5 bits (100), Expect = 1e-12 Identities = 133/187 (71%), Gaps = 1/187 (1%) Strand=Plus/Plus Query 424005 TAAAATACTTTTCTCCATACTTCCAATCAACAAGCAAATCTTTTATCAAAAATTGAGAAG 424064 |||| || ||||| || | |||||| || | | || ||||| | ||| ||| | Sbjct 1068 TAAAGTATTTTTCACCCTTTCTCCAATTAATTAAAAGATTTTTTACTAGAAAACTAGATG 1127 Query 424065 TTATTAGTCTTCCTCTATTATGCATAAATCCAGTTGTATTTAACTCGCGCATGGCGGCAT 424124 | || | |||| |||||||||||| | || ||| |||||| | | ||| | || | Sbjct 1128 TAATCATTCTTAATCTATTATGCATCCAACCTGTTTGATTTAATTGTCTCATTCCTGCGT 1187 Query 424125 CTACAATTGGAAATCCAGTGCATCCATTTTTCCATGCTTCAAAATACTTTTTATTATTT- 424183 |||| || ||||| || || |||||||||||| || | |||||| ||| |||||||| Sbjct 1188 CTACTATAGGAAAACCTGTATTTCCATTTTTCCAAGCGTTAAAATAATTTATATTATTTG 1247 Query 424184 TCCCATT 424190 ||| ||| Sbjct 1248 TCCAATT 1254 >seq220352 Length=119000 Score = 89.7 bits (98), Expect = 4e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || || || ||||| || || ||||| | || || || || || || |||||| Sbjct 110365 GCTGTGATCACAGTTCCAGCTTACTTCAATGATGCCCAGCGGCAGGCAACCAAGGATGCT 110306 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || || |||||||||||| |||| | | || ||||| ||||| ||||||||||| || Sbjct 110305 GGTCGAATTGCTGGACTTGATGTCCAAAGAATCATCAACGAACCAACTGCTGCTGCTCTG 110246 Query 550520 GCATATGGA 550528 | |||||| Sbjct 110245 TCTTATGGA 110237 >seq116247 Length=2956 Score = 89.7 bits (98), Expect = 4e-12 Identities = 132/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 550351 GAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAAC 550410 |||||||||| | || ||| | || | ||| | ||| || || || || || || Sbjct 1107 GAAAATGAAAAAGACCGCCGAAGATTACCTCGGTGAGCCAGTGACTGAAGCGGTTATTAC 1166 Query 550411 TGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGC 550470 ||||| || || || || || | || ||||| || || ||||| || || ||||| || Sbjct 1167 CGTACCTGCTTACTTCAACGATGCGCAGCGTCAGGCAACCAAAGACGCCGGCCGTATCGC 1226 Query 550471 TGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACT 550530 || || | || ||||| || || ||||| |||||||||||||| ||||| || || Sbjct 1227 AGGTCTGGAAGTCAAACGTATCATTAACGAACCGACTGCTGCTGCACTGGCATACGGTCT 1286 Query 550531 TGATAAA 550537 |||||| Sbjct 1287 GGATAAA 1293 >seq61150 Length=3941 Score = 87.8 bits (96), Expect = 1e-11 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 865334 TAAAGCAAAAGGACCATGCTTTAATGCAGCTGCAGAATAACCTTCTGCATGAATATAAGA 865393 ||| |||| |||||||||||| | | | | | | |||| |||| |||||||||||||| Sbjct 2527 TAATGCAAGAGGACCATGCTTAAGTTCTCCAGAGGGATAAGCTTCAGCATGAATATAAGA 2586 Query 865394 TATTTCTTTTATTTTTAATGAACCTTCTTTAGCAAT 865429 |||||||||| |||||||| ||||| ||||||| Sbjct 2587 AATTTCTTTTAATTTTAATGCTCCTTCCATAGCAAT 2622 >seq46862 Length=45342 Score = 87.8 bits (96), Expect = 1e-11 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 563284 TCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAA 563343 ||||| ||| ||||||||||||| |||| |||||| | || |||||||||||| Sbjct 22830 TCTTTCTGAATGTTGTAATCAGCTAATGTTCGCCCATCTTCCAACTGCTTTCCGGCAAAA 22889 Query 563344 ATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAA 563386 || || ||||||||||| |||||||| || || || || |||| Sbjct 22890 ATTAGCCTTTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGAA 22932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4002894942033290