Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_016160.1 Length=36661 Score E Sequences producing significant alignments: (Bits) Value seq446996 277 4e-70 seq150516 232 2e-56 seq79056 212 1e-50 seq247063 152 1e-32 seq201909 132 1e-26 seq165096 95.1 3e-15 seq297834 80.6 6e-11 >seq446996 Length=293 Score = 277 bits (306), Expect = 4e-70 Identities = 236/291 (81%), Gaps = 0/291 (0%) Strand=Plus/Minus Query 27122 TGACTCCCCGTTGAACCATTTACTAATGGCTTTTGGTGTGACCTTAAGCCTGACAGCTAA 27181 |||||| || |||||||||||||| | |||||||| || ||||| |||||| |||| Sbjct 291 TGACTCACCATTGAACCATTTACTTACCGCTTTTGGGGTAACCTTGAGCCTGCTGGCTAT 232 Query 27182 ATCAGCCTGCCTACCATGCAAAGGTAATCCCGCTTTATCACAGGTCAGCGCAAGCCTCTG 27241 || |||||||| || || | | | ||||| ||||| |||| |||||||||||| || Sbjct 231 TTCTGCCTGCCTTCCGTGTACTGCCATCCCCGCCTTATCGCAGGCCAGCGCAAGCCTTTG 172 Query 27242 CGAGAAAGTTTCACGCTCTTTCTGTTGAACCATAAGTTCAACTATATTAGGTATTGACTG 27301 |||||| | |||||||||||| | |||||||| ||||||||||||||| | ||||||| Sbjct 171 CGAGAATGATTCACGCTCTTTTTCCTGAACCATGAGTTCAACTATATTACTTCTTGACTG 112 Query 27302 TACTATCAGTTCCGTCATAATATGAACCATAAGTTCACCACAGGAGAGAAGCATGAACGA 27361 |||| |||||||| |||||| ||| || |||||||||||||| || ||||| ||| Sbjct 111 TACTTTCAGTTCCATCATAAAATGTACTTAAAGTTCACCACAGGGGATTTACATGAGCGA 52 Query 27362 AGTTACGTTTGCAGACGTTATCAAATCCGTTCGAGTTTCTGTTGTGGCTGA 27412 ||||||||| |||||||||||| |||||||| ||||| ||||||||||| Sbjct 51 CATTACGTTTGGAGACGTTATCAAGTCCGTTCGTGTTTCAGTTGTGGCTGA 1 >seq150516 Length=8092 Score = 232 bits (256), Expect = 2e-56 Identities = 231/297 (78%), Gaps = 8/297 (3%) Strand=Plus/Minus Query 33077 AAAGGGGAAGA--CGATGAGCATAAGAGAGCTAAACCTCACCAAAGAACAGCACGATTGG 33134 ||||||||||| ||||||||||| | ||||| || || | ||||| ||| |||| ||| Sbjct 5793 AAAGGGGAAGAAGCGATGAGCATACGCGAGCTTAATCTATCGAAAGACCAGTACGACTGG 5734 Query 33135 CTGAATTGCTGGCTTGAACTGTGGGGCGCATGGGTTTATTCAGGTCGTCTGGAAAAGCGC 33194 |||||| | ||||| || ||||||||||||||||||| || | ||||| ||||| Sbjct 5733 CTGAATAGTTGGCTGGAGTTGTGGGGCGCATGGGTTTACAGCGGCAGGCTGGAGAAGCGA 5674 Query 33195 ATGAGCAGCGTAATAGCGAAGTTCATGGAGAGCGTAGAGCCGGGAAGAGTTATGACAAGG 33254 ||||||||| | || || ||| ||||| ||||| || || | || ||| | || Sbjct 5673 ATGAGCAGCATGATCGCTCAGTGGATGGAAAGCGTTGAACCCAGCGGA---ATGCCTAGT 5617 Query 33255 C---CAATGTGCAATGATGATGATGGAATGTTGATTTCTCAGGTCGTCGATTCCGTCATG 33311 | | ||||||||||| ||||| ||||||||||||||||||||||| |||||||| ||| Sbjct 5616 CGCCCGATGTGCAATGACGATGACGGAATGTTGATTTCTCAGGTCGTAGATTCCGTTATG 5557 Query 33312 TACATTGACAAGAAAGCCTTCGGCATCCTCCTCAGCTACTACGCTCATGGTTCATCT 33368 | ||||||||| ||||| || |||||||| || || || ||| |||| || ||| || Sbjct 5556 TGCATTGACAAAAAAGCGTTTGGCATCCTGCTGAGTTATTACTCTCACGGATCAACT 5500 >seq79056 Length=2380 Score = 212 bits (234), Expect = 1e-50 Identities = 398/567 (70%), Gaps = 26/567 (5%) Strand=Plus/Plus Query 33114 ACCAAAGAACAGCACGATTGGCTGAATTGCTGGCTTGAACTGTGGGGCGCATGGGTTTAT 33173 |||||||| ||||| |||||| | | ||||| || | ||||| |||||||| ||| Sbjct 5 ACCAAAGAGCAGCAGGATTGGATTGAGCAATGGCTAGAGTTATGGGGGGCATGGGTATAT 64 Query 33174 TCAGGTCGTCTGGAAAAGCGCATGAGCAGCGTAATAGCGAAGTTCATGGAGAGCGTAGAG 33233 |||||||| | |||||||| ||||||||| | ||||| ||| ||||| || |||||| Sbjct 65 TCAGGTCGCTTAGAAAAGCGTATGAGCAGCATGATAGCCCAGTGGATGGAAAGTGTAGAG 124 Query 33234 CCGGGAAG-AGTTAT--GACAAGGCCAATGTGCAATGATGATGATGGAATGTTGATTTCT 33290 || ||| ||||| ||||||||| ||||| ||||||||||| ||||||||||||||| Sbjct 125 CC---AAGCGGTTATCCGACAAGGCCCATGTGTAATGATGATGACGGAATGTTGATTTCT 181 Query 33291 CAGGTCGTCGATTCCGTCATGTACATTGA--CAAGAAAGCCTTCGGCATCCTCCTCAGCT 33348 |||||||| |||||||| | | |||| ||| | | || || || | | | Sbjct 182 CAGGTCGTAGATTCCGTGCTCAAAGTTGATCCAACTA--CTTTGGGGATATTGATGGCTT 239 Query 33349 ACTACGCTCA-TGGTTCATCTAAGCGAGCAATTGCATCCTACTA-TCACGCGACTGCAAA 33406 | |||| ||| | ||| ||| ||||||| ||| | ||||| | ||| ||||||| Sbjct 240 ATTACG-TCACCAATAAATCCAAGAGAGCAATAGCAGCTTACTACTATCGC-TCTGCAAA 297 Query 33407 GCCACGCAAGATGTGT---GGACGTGGTGGCGAGGGATGGAGAAAACCTTCACTGGCAAC 33463 ||||||||||| | | || | || || || ||||| | || ||| || ||| Sbjct 298 ACCACGCAAGATATCTAAGGGGAGACTAGGTGAAGGTTGGAGGAGGCCATCAGAGGAAAC 357 Query 33464 CTGTAGAAACGAAATTGACGACATCCTGAAAGC--GTCGTTATTTG-TTTTGTACCAGCC 33520 || || ||| || ||| | ||||||| ||| || || | || | | || Sbjct 358 GCTAAGGAAAGAAGTTAGCGAAAGGTTGAAAGCAAGTCAGTACATGATCTTCTTC---CC 414 Query 33521 AATGCAAAATGCTTTCAAAATGCGTAAACGTGTTG-AGAAAGTTAAGCATGTTGCTGTTA 33579 | ||||||| | |||||||| ||| || | |||||||||||| || | | | Sbjct 415 TCTAGAAAATGCCATGAAAATGCG-AAAGATGAAGCCTAAAGTTAAGCATATT-CAGGAA 472 Query 33580 AAAGCCTTGACATGCAATTATCCATTTAGCCATAATTAGAAGGTAAGCTGCCGTTAGTGA 33639 || ||||||||| | || | ||||| ||||||| | ||||||||| ||||||| Sbjct 473 AATTGCTTGACATGGTAATACCTATTTACCCATAATATACACATAAGCTGCCTTTAGTGA 532 Query 33640 CTCTTAAGTTGCAACGGTGGCTTTTTT 33666 ||||||||| | || ||||||||| Sbjct 533 ATCTTAAGTTCACAAGGCGGCTTTTTT 559 >seq247063 Length=2355 Score = 152 bits (168), Expect = 1e-32 Identities = 153/195 (78%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 26380 GCTAATGAGCAGCATTGCCGTTCATCCTGAACCCGCCGCGCTCCCGACGCATGGTTTAAA 26439 ||| || ||| |||||||||||||||||||||||||| || ||||| ||||||||| | Sbjct 396 GCTTATATGCATCATTGCCGTTCATCCTGAACCCGCCGAGCATCCGACACATGGTTTAGA 337 Query 26440 GACGCGCCGTTCGTCTATGGGCTTATGATGTACCTAAAGTTCA--TTAATGTAAAGTACC 26497 |||| ||||||||||| |||| ||| |||||| |||||| ||| |||||||||| Sbjct 336 GACGTGCCGTTCGTCTGTGGGAATATAATGTACTATTAGTTCACATTA--GTAAAGTACC 279 Query 26498 AGTAGTAC--ATTTTATGGGTATAAAAAGCTCACTACATCATAAGTTAGTGAACTTTAAG 26555 | ||||| |||| || ||| | || |||| | |||||||| |||||| |||| Sbjct 278 AAAAGTACATATTTAATTGGTTT--TTAGTTCACAGAAAGATAAGTTATTGAACTATAAG 221 Query 26556 GAAATTTATTTTTAT 26570 | ||||||||||||| Sbjct 220 GTAATTTATTTTTAT 206 >seq201909 Length=21394 Score = 132 bits (146), Expect = 1e-26 Identities = 149/197 (76%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 32257 TAATGGCTAACCTACGCAAAGAAGCACGCGGCAGAGAATGCCAGGTACGTATTTACGGCG 32316 |||||| ||| |||| |||||||| || ||||| ||||||||||| | | || Sbjct 7166 TAATGGGTAATTTACGAAAAGAAGCGCGGGGCAGGGAATGCCAGGTCAGGCTGCCAGGTA 7107 Query 32317 TATGCAATGGCAACCCTGAAACTACAGTTCTGGCACATTACCGGATGGCTGGAATTTGCG 32376 | ||||||||||| ||||||| || || || || |||||||||| || || || | Sbjct 7106 TCTGCAATGGCAATTCTGAAACGGTCGTACTCGCGCACTACCGGATGGTAGGCATCTGTG 7047 Query 32377 GAACGGGAATGAAGCCTGACGACCTGATCGGCGCATGGGCTTG-TAGCGCGTGTCACGAT 32435 |||| |||||||| ||||| ||||| ||||||||||||| || | ||| || |||||| Sbjct 7046 GAACTGGAATGAAACCTGATGACCTTTTCGGCGCATGGGCGTGCTCTCGC-TGCCACGAT 6988 Query 32436 GAAATCGACCGACGCAC 32452 || || ||||| || || Sbjct 6987 GAGATAGACCGCCGTAC 6971 >seq165096 Length=1564 Score = 95.1 bits (104), Expect = 3e-15 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 21191 GTGGGCGTATCTTTGAACCATTTCGAGAGTTTCCCATCCTCCCATCTCTTTAAGTGCAAG 21250 ||| |||||| | | ||||||||| | | ||||| || ||||| ||||| ||||| | Sbjct 828 GTGAGCGTATTTATTAACCATTTCCAACTTCTCCCAACCACCCATTTCTTTTAGTGCCAT 887 Query 21251 AAGAGAGACACCGGACTGAACCAGCCAGCTTGCCCAAGTATGCCTCAGGTCATGGAAGCG 21310 || | ||| |||||| |||| ||||||||||| || ||||||||||||||||| Sbjct 888 TAGTGGCGTTCCGTTCTGAACGTGCCAACTTGCCCAAGTGTGTCTCAGGTCATGGAAGCG 947 Query 21311 GAAGTTGCTAATGCCTG 21327 ||| | |||||||| Sbjct 948 GAAATCTTCAATGCCTG 964 >seq297834 Length=201 Score = 80.6 bits (88), Expect = 6e-11 Identities = 73/92 (79%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 21222 TCCCATCCTCCCATCTCTTTAAGTGCAAGAAGAGAGACACCGGACTGAACCAGCCAGCTT 21281 ||||| || ||||| ||||| ||||| | || | || |||||| |||| ||| Sbjct 5 TCCCAACCGCCCATTTCTTTCAGTGCCATTAGTGGCGTTCCATTCTGAACGTGCCAACTT 64 Query 21282 GCCCAAGTATGCCTCAGGTCATGGAAGCGGAA 21313 |||||||||||||||||||||||||||||||| Sbjct 65 GCCCAAGTATGCCTCAGGTCATGGAAGCGGAA 96 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 116498847114046