Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_016761.1 Length=38684 Score E Sequences producing significant alignments: (Bits) Value seq399404 219 1e-52 seq449472 176 1e-39 seq201909 107 5e-19 seq366053 84.2 5e-12 seq255299 84.2 5e-12 seq102074 80.6 7e-11 >seq399404 Length=241 Score = 219 bits (242), Expect = 1e-52 Identities = 173/205 (84%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 28640 AGGCTTGCGCGA-GTTTTCCATGCGCGGCGCCGTGACGTGCTGGCAGATTGACGCATCCA 28698 ||||||| ||| || |||||||| || || || |||||||| |||||||| ||||| | Sbjct 204 AGGCTTG-GCGCTGTGGTCCATGCGGGGAGCAGTTACGTGCTGACAGATTGAAGCATCAA 146 Query 28699 TGCGGGCCGGTAGTTTCCCACGCACCGCAAACAGGCAGTCTTCGCTGTTCGCCCTTGTCA 28758 || | || | ||| || |||||||||||| |||||||||||||| |||| ||||| Sbjct 145 GTCGCGATGGCAATTTTCCCTTCACCGCAAACAGACAGTCTTCGCTGTTTGCCCGTGTCA 86 Query 28759 TGTGGCCCATGCCGATCGCGCTGTTACCTTTGTGCTTATTCGTCTTGTGCCAGGTGAATC 28818 |||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct 85 TGTGGCCCATCCCGATCGCGCTGTTACCTTTGTGCTTATTGGTTTTGTGCCAGGTGAATC 26 Query 28819 CCTTCATGGTCATCAGCTTGAAGCC 28843 ||||||||||||||||| ||| || Sbjct 25 CCTTCATGGTCATCAGCCGGAACCC 1 >seq449472 Length=298 Score = 176 bits (194), Expect = 1e-39 Identities = 181/237 (76%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 28817 TCCCTTCATGGTCATCAGCTTGAAGCCCCACGATTCGACCACTTTCAACGCCTCAACCGG 28876 ||||||||||||||||||| ||| ||||| | || | ||| |||| ||| || | ||| Sbjct 298 TCCCTTCATGGTCATCAGCCGGAACCCCCAGGCATCCATCACCTTCAGCGCTTCCATCGG 239 Query 28877 CTGAGTAGGAACCCACCACATTGCCAGTAGGCAATCGTCGGCGGCAAGACTCCACACTGG 28936 ||||| || ||||||||||| ||||| ||||||| || ||| | | || || || Sbjct 238 TTGAGTTGGCACCCACCACATAGCCAGCAGGCAATTCTCTTCGGACAAATCCCTTACCGG 179 Query 28937 CAGGCGACAGATATCCAGCACGTTCATAACCGGATATTTGAATCCGGCGCCGCGCTCGCC 28996 || || || |||||| ||||| |||| | ||||| ||| |||||||| ||||| Sbjct 178 CAAACGGCAAATATCCTGCACGGTCATCGTTTGGTATTTATGTCCTGCGCCGCGTTCGCC 119 Query 28997 GTCGGCTGCTTTGTCGCGGTATGTCCATGGAGGATCAGCATAAATCAGAGTGTATTT 29053 |||| ||||| |||||||| ||||| || ||||| ||||||||||| |||||||| Sbjct 118 GTCGTTGGCTTTATCGCGGTACGTCCACGGTGGATCTGCATAAATCAGGGTGTATTT 62 >seq201909 Length=21394 Score = 107 bits (118), Expect = 5e-19 Identities = 216/319 (68%), Gaps = 15/319 (5%) Strand=Plus/Minus Query 262 ATCCAGAAACGGATCGCCGAGCTGATGGAAGAGCGCAACAAGCGCCTGCGCGTCAGTGCT 321 |||||||| | |||||||| || | | | | |||||| ||| | | | |||| Sbjct 2624 ATCCAGAACAGAATCGCCGAACTTAAAGTACAACGCAACGAGCAAGTAAACATTGATGCT 2565 Query 322 GATTACGTGCTGCTTCGCCTGGTGGAAGTAGACCAGATGGATGTGATCGACATCCTGAAC 381 | ||| ||||| | ||||||||||| | ||| ||||||| ||| ||||||||||| Sbjct 2564 GCTTATGTGCTTCGCCGCCTGGTGGAGATTGACAAGATGGACGTGCTCGACATCCTGCTT 2505 Query 382 GATGACGGCACCCTGAAGCCAATCCGCGAGTGGCCAAAGATATGGCGTACCACGCTGAGT 441 | | ||| ||||||||||| || ||||| || | |||||| ||||| ||| Sbjct 2504 GCCAATGGCGAGCTGAAGCCAATTAAAGACTGGCCGAAAACATGGCGAACCACTCTGTCC 2445 Query 442 GGTTTCGACCTGTCATCGACCATCATGAATATGGATGAGACATCAATCGAGACGATCCTC 501 ||| | || ||| | || | |||| | | || | || | | | || Sbjct 2444 GGTATGGA--TGTAACCG----------AGATGGCCG-GTGATGCAGCGGG--GCTGCTG 2400 Query 502 aaaaaaaTCAAATGGCCTGACAAGGTGAAGAACCTCGAGTTAATCGGTAAGCACGTCGAC 561 || |||||||||||||| ||||||||||||||||| ||| | | |||||||| || Sbjct 2399 AAGAAAATCAAATGGCCGGACAAGGTGAAGAACCTTGAGCTGCTTGGTAAGCATATCAGT 2340 Query 562 GTCAATGCATTTAAAAAGC 580 || | || |||||| ||| Sbjct 2339 GTGCAGGCGTTTAAAGAGC 2321 >seq366053 Length=223 Score = 84.2 bits (92), Expect = 5e-12 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 2813 TGGTGCGGCATGCAGGATTCGAACCTGCGGCCAACCGCTTAGAAGGCGGTTGCTCTATCC 2872 |||| || | | ||||||||||||||| | || || ||||||||||| | |||||||||| Sbjct 223 TGGTACGCCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGGTGCTCTATCC 164 Query 2873 AACTGAGCTAA 2883 ||||||||||| Sbjct 163 AACTGAGCTAA 153 >seq255299 Length=12406 Score = 84.2 bits (92), Expect = 5e-12 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 2813 TGGTGCGGCATGCAGGATTCGAACCTGCGGCCAACCGCTTAGAAGGCGGTTGCTCTATCC 2872 |||| || | | ||||||||||||||| | || || ||||||||||| | |||||||||| Sbjct 3294 TGGTACGCCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGGTGCTCTATCC 3353 Query 2873 AACTGAGCTAA 2883 ||||||||||| Sbjct 3354 AACTGAGCTAA 3364 >seq102074 Length=1593 Score = 80.6 bits (88), Expect = 7e-11 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 2825 CAGGATTCGAACCTGCGGCCAACCGCTTAGAAGGCGGTTGCTCTATCCAACTGAGCTAA 2883 ||||||||||||||| | || || ||||||||||| ||||||||||||| ||||||||| Sbjct 1128 CAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTATCCAGCTGAGCTAA 1070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122934069998892