Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_016762.1 Length=49135 Score E Sequences producing significant alignments: (Bits) Value seq75855 289 9e-74 seq103047 125 2e-24 seq113804 109 2e-19 seq479812 107 6e-19 >seq75855 Length=31220 Score = 289 bits (320), Expect = 9e-74 Identities = 649/967 (67%), Gaps = 6/967 (1%) Strand=Plus/Plus Query 15540 TGGCTCGTTATTGACCTGAGGCTTCGTGTCGTAGACCTCGTAGCTGCCTGGCTTCACATC 15599 ||| || || || | |||||||| ||||||| | | || ||||| ||||| | ||| Sbjct 18248 TGGTTCATTGTTAATCTGAGGCTCTGTGTCGTGAATTTGATACCTGCCAGGCTTGATATC 18307 Query 15600 GTACAGAGGCAGACCTAGGTGCGAGGAAACAATCGCAACAGAATGGTTGTCAGGCACTTC 15659 | || || |||| ||| || || ||||| || ||||| ||||||||||| ||| Sbjct 18308 AAATAGCGGTTTGCCTAAGTGAGAAGACACAATGGCCACAGAGTGGTTGTCAGGTACTGT 18367 Query 15660 AAATCGCTGCAATTCACCACTCTGGAAAGCGCTTGGCTT-CTTGTCTTTCAGATTTCTCG 15718 |||| || | || |||| || |||| ||| || || | |||| | ||||| | Sbjct 18368 AAATGTCTTAAGCTCGCCACCTTGAAAAGAGCTGGGTTTAGATTTCTTAAGGTTTTCT-G 18426 Query 15719 CTCGCGCTTCGATATTGTCGAACATGGCTGAAAATGCCTTGCTCGCCTTTTTGTCGTATT 15778 ||| | | ||| | || ||||| || ||||| || ||||| || || || |||| Sbjct 18427 CTCTTGATAGGATTTCATCAAACATTGCAGAAAAGGCTTTGCTAGCTCGCTTATCATATT 18486 Query 15779 GCGTAGAGCGATTGAAGACGAAGGAGTGAATAACAGGGACCGGAGCGCCAAATTGATTAC 15838 |||||||| || || || || || || || || || |||| || || || | | Sbjct 18487 CAGTAGAGCGGTTAAAAACCAAAGAATGTATCACCGGCACCGCTAAACCGAAGTGGATGC 18546 Query 15839 TTCGGTCAAAGAAGCTAACGGCCTTGTAGGCGTCCTGAACATCAATCCCGTAGACCAGTT 15898 ||| ||| ||||| |||| | ||| | | |||||| ||| |||||||| || | Sbjct 18547 ATCGATCATAGAAGTTAACAGATCGGTAATCATTCTGAACCCCAACACCGTAGACAAGCT 18606 Query 15899 GACCAAGGTTGTCGATCGCTCGCGCGGAAGAGCCATCGCTCGAACATGGGACGATAATCT 15958 | | ||||||||| | || | ||| ||||| |||||||| || |||||||| || || Sbjct 18607 GGCTAAGGTTGTCTACGGCCCTCGCCGAAGACCCATCGCTTGAGCATGGGACAATTATGG 18666 Query 15959 GGTTGGCAGCCAGAAGCGCGAGTTCAGTGTAGGCCGCGAAGCTGGGATTGCAGTCGATGA 16018 || ||||| | || | || || || || || | || || || ||||| || |||| Sbjct 18667 CATTTGCAGCAATCAGAGAAAGCTCGGTATAAGCTGAAAAACTAGGGTTGCAATCTATGA 18726 Query 16019 AGCAGGTGGTTTCTTGCTCACCAAGGTAATTGCCACAGGCCGTTACCAGATCCTTGAGCC 16078 | || || | || || | | | |||| || | || || |||| Sbjct 18727 AACATACTGTATTTTCAATTCCTTGCTGCTGAGCACAAGCAACCAAAAGGTCACGAAGCC 18786 Query 16079 AGAGGTGGACATTCTTCCAAGAGTCTGCCGGCAGGCTGACGGCGCTCAATTGGTTGATTA 16138 | || |||| | | |||||||| || | |||||| | ||| ||| | |||||| || | Sbjct 18787 ACAGATGGATACTTTTCCAAGAATCAACGGGCAGGTTCACGCTGCTAAGTTGGTTAATGA 18846 Query 16139 CAGGAGCCTGGACCTCAAGACTTGGATCACCTGCCAGGCAGTAA-AGATTGTCTGGCATG 16197 | |||| || || || | ||| ||||| || || | || || | ||| || || ||| Sbjct 18847 CCTGAGCTTGAACTTCTAAACTAGGATCGCCAGCGA-TAAGAAACACATTTTCGGGAATG 18905 Query 16198 TTGGCGTTGTGATCC-TTCCCTTTCACCAAAAAAGACGTCTCACTACCCGTAATCGCATG 16256 | || || ||| | || | |||||| || || || |||||| ||| Sbjct 18906 CTTTTATT-TGTTCCATGAACTGGAATCAAAAAGCTTGTTTCTGAGCCAGTAATCATATG 18964 Query 16257 TGCGCTACGTGTGCGGGCATCAAAATACCCGCCGATGGTTTTGCGCTGAGCAATGAGCTT 16316 || ||| || || | ||||| || ||||| | |||| | ||||| || || | Sbjct 18965 TGGGCTTCGAGTTCTTCTGTCAAAGTATCCGCCAACGGTTCTTCGCTGCTGGATTAGGTC 19024 Query 16317 TCCAAGCGCAGCGGCACCTTTGCCGTTACCGCCAAGAATGATCTCCGAAAGGTTGGCCTG 16376 ||||| || || ||| | || ||||| ||||| | ||| || ||||| || ||||| Sbjct 19025 AGCAAGCCTTGCTGCTCCTGTACCATTACCTCCAAGGAGGATTTCAGAAAGATTCGCCTG 19084 Query 16377 CGGGCACATGTCAGCGACGATGACGCGCTTTTCAGGATGAATTCGTGCATATTCTGACGC 16436 |||||||||||||| | || ||||| || || || | || |||||||| | || Sbjct 19085 TGGGCACATGTCAGCAAAAATTACGCGTTTATCTGGGTTTTGGCGCGCATATTCGGTTGC 19144 Query 16437 GATAGCAAACGTCAGGTAAGTCTTACCGACCCCACCTTTGTTGTTCCATATCGCATACGA 16496 |||||||| | || || |||||||| || || |||||||||||||| |||||||| || Sbjct 19145 CATAGCAAATGAGAGATAGGTCTTACCCACTCCGCCTTTGTTGTTCCAGATCGCATATGA 19204 Query 16497 TTTCATG 16503 ||||||| Sbjct 19205 TTTCATG 19211 >seq103047 Length=44447 Score = 125 bits (138), Expect = 2e-24 Identities = 129/166 (78%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 21293 CTGGCGATGGAGCTTGGTATCCCCGTGATCGTGCTGTCGCAGCTCAACCGCTCCCTGGAG 21352 ||||||| ||||| | || ||| | | |||||||||||| ||||||||||||||| Sbjct 2069 CTGGCGAAAGAGCTGCAGGTGCCGGTGGTGGCGCTGTCGCAGCTTAACCGCTCCCTGGAG 2010 Query 21353 CAGCG-GCCGAACAAGCGACCGATGATGTCGGACCTGCGCGAGTCCGGGGCGATCGAGCA 21411 ||||| ||||| ||||| ||| | | || |||||||| || ||||| | |||||||| Sbjct 2009 CAGCGTGCCGAT-AAGCGCCCGGTCAACTCCGACCTGCGTGAATCCGGCTCCATCGAGCA 1951 Query 21412 GGACGCCGATGTGATCATGTTCGTGTACCGCGACGAGGTCTACCAC 21457 ||| ||||| |||||||||| | ||||| || ||||| || ||| Sbjct 1950 GGATGCCGACCTGATCATGTTTATCTACCGTGATGAGGTGTATCAC 1905 >seq113804 Length=1483 Score = 109 bits (120), Expect = 2e-19 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 13621 GCTGGTAGATCTCGGAGCGGTGGATGGCGACGTCGTCCGGGGCGGTGATGCCGAGGCGCA 13680 ||||||||||||| ||| || | || ||||| | ||| |||||||| |||| ||||| Sbjct 191 GCTGGTAGATCTCTTCGCGATGCACAGCAACGTCCTTCGGCGCGGTGATACCGATGCGCA 132 Query 13681 CCTGGTCGCCTTGGCTGCTGAGGACCGTGACGGTGATGTTGTCGCCGATATGCAGGGTTT 13740 |||||| ||| | | || ||| || |||||| | | ||| ||||| |||||||| Sbjct 131 CCTGGTTGCCCTTGACGCCGAGCACGGTGACGCTCACCGAGTCTCCGATCATCAGGGTTT 72 Query 13741 CGCCGGGGCGGCGGGTCAAGATCAGCAT 13768 ||||| |||||| |||||||||| ||| Sbjct 71 CGCCGACGCGGCGAGTCAAGATCAACAT 44 >seq479812 Length=451 Score = 107 bits (118), Expect = 6e-19 Identities = 135/185 (73%), Gaps = 3/185 (2%) Strand=Plus/Minus Query 21326 CTGTCGCAGCTCAACCGCTCCCTGGAGCAGCGGCCGAACAAGCGACCGATGATGTCGGAC 21385 ||||| |||||||||||||| ||||| || | ||||||| ||| ||||| | ||| Sbjct 261 CTGTCCCAGCTCAACCGCTCGCTGGAAACACGTACCGACAAGCGCCCGGTGATGGCCGAC 202 Query 21386 CTGCGCGAGTCCGGGGCGATCGAGCAGGACGCCGATGTGATCATGTTCGTGTACCGCGAC 21445 || ||||| || || || ||||||||||| || || ||||| | ||| | ||||||||| Sbjct 201 CTTCGCGAATCGGGCGCAATCGAGCAGGATGCGGACATGATCGTCTTCATCTACCGCGAC 142 Query 21446 GAGGTCTACCACCCGG---ATACCCAGTACCGCGGCGTGGCTGAGTTGATCATCGCGAAG 21502 || |||| || || || | | | || ||| |||| ||| | ||||||| ||| Sbjct 141 GATTACTACAACAAGGAAAATTCGCCGGACAAGGGCCTGGCCGAGATCATCATCGGCAAG 82 Query 21503 CACCG 21507 || || Sbjct 81 CATCG 77 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156179010369394