Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_017969.1 Length=108853 Score E Sequences producing significant alignments: (Bits) Value seq209331 116 3e-21 seq79071 105 5e-18 seq213894 102 6e-17 >seq209331 Length=9407 Score = 116 bits (128), Expect = 3e-21 Identities = 138/187 (74%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 27053 ATTACATCGCCTGAGTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGAGTCAGTG 27112 |||||| | | ||| || || || |||| || || | ||| ||||| |||||||| Sbjct 302 ATTACAGTGATTTAGTGAAGGTTCGGGTAATCACATCCTGCTGCTGTTCTTTAGTCAGTG 361 Query 27113 CATTAAATCGAACAGCGTAGCCAGAGACACGGATGGTCAACTGAGGATATTTTTCAGGAT 27172 ||||| || || ||||| || || || || ||||||| ||| |||||||| || |||| Sbjct 362 AGTTAAAGCGGACCGCGTAACCGGAAACGCGAATGGTCAGCTGCGGATATTTCTCTGGAT 421 Query 27173 GTTTCTGCGCATCCAAAAGCTGGTCACGGCTTAATACATTAACATTTAGGTGCTGACCAC 27232 ||| | ||| |||| ||| |||||| | | || ||||| || ||||||||||| | Sbjct 422 GTTCCATCGCGTCCAGCAGCATTTCACGGTTCATAACGTTAACGTTGAGGTGCTGACCGC 481 Query 27233 CTTCGAT 27239 ||||||| Sbjct 482 CTTCGAT 488 >seq79071 Length=852 Score = 105 bits (116), Expect = 5e-18 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 27066 AGTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGAGTCAGTGCATTAAATCGAAC 27125 |||||| ||||| |||| |||||| ||| || ||| | ||||||| ||||| || || Sbjct 193 AGTAAAGGTACGGGTAATTACGTCGCGCTGCTGCTCAGGCGTCAGTGAGTTAAAACGCAC 252 Query 27126 AGCGTAGCCAGAGACACGGATGGTCAACTGAGGATATTTTTCAGGATGTTTCTGCGCATC 27185 || ||||| || |||||||| |||| ||| ||||| |||||||||||||| ||||| Sbjct 253 GGCATAGCCTGAAACACGGATAGTCAGCTGCGGATAGTTTTCAGGATGTTTAACTGCATC 312 Query 27186 CAAAAGCTGGTCACGGCTTAATACATTAACATTTAGGTGCTGACCACCTTC 27236 ||| || || | | || || || || || ||||| |||||||| Sbjct 313 TTCCAGCGTTTCGCGACGCAGAACGTTGACGTTCAGATGCTGTCCACCTTC 363 >seq213894 Length=28734 Score = 102 bits (112), Expect = 6e-17 Identities = 134/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 27054 TTACATCGCCTGAGTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGAGTCAGTGC 27113 |||||| |||||| || ||||| | || || || | ||| ||||| |||||| | Sbjct 8989 TTACATGCTCTGAGTGAAGGTACGGGTGATCACATCCTGCTGCTGTTCTTTAGTCAGCGA 8930 Query 27114 ATTAAATCGAACAGCGTAGCCAGAGACACGGATGGTCAACTGAGGATATTTTTCAGGATG 27173 || || || || || ||||| || || || ||||| ||||| ||||||||||| || | Sbjct 8929 GTTGAAGCGTACCGCATAGCCCGACACGCGAATGGTTAACTGCGGATATTTTTCCGGGTC 8870 Query 27174 TTTCTGCGCATCCAAAAGCTGGTCACGGCTTAATACATTAACATTTAGGTGCTGACCACC 27233 || | ||| |||| ||| |||||| | | || || || || ||||||||||| || Sbjct 8869 TTCCATCGCTTCCAGCAGCATTTCACGGTTCATCACGTTGACGTTGAGGTGCTGACCCCC 8810 Query 27234 TTCGAT 27239 ||| || Sbjct 8809 TTCAAT 8804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346086232878134