Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_017981.1 Length=49981 Score E Sequences producing significant alignments: (Bits) Value seq497144 257 5e-64 seq136258 246 1e-60 seq153502 224 3e-54 seq20418 89.7 2e-13 >seq497144 Length=1636 Score = 257 bits (284), Expect = 5e-64 Identities = 331/449 (74%), Gaps = 17/449 (4%) Strand=Plus/Minus Query 25866 CTGAGGCTGTTGAGGTTGGCCCCAACCGGTGTTACTTGCGCTACGA--TTACCGCCGCC- 25922 ||| ||||| ||||| |||||||||||| |||| |||| || || | ||||||||| Sbjct 1535 CTGTGGCTGCTGAGGCTGGCCCCAACCGTTGTTG-TTGC-CTGCGCCCTGACCGCCGCCT 1478 Query 25923 GCTG-----CCGCCTTCTGGAGCCTTGCCG---ATCATCTGCATGGTTCCGCCAACGTTG 25974 |||| ||||| | |||| ||| | |||||||||||| ||||||||||| Sbjct 1477 GCTGGAGCACCGCCGCCCTGAGCACGACCGCCCAGCATCTGCATGGTGCCGCCAACGTTA 1418 Query 25975 ACCACAATTTCAGTGGTGTAGCGCTCAACGCCGTCCTTTTC---CCACTTGCGGGTTTTC 26031 ||||||| ||| |||||||| ||||||||| ||| || ||| || ||||| | | Sbjct 1417 ACCACAACTTCGGTGGTGTACTTCTCAACGCCAGCCTGGTCAGTCCATTTACGGGTCTGC 1358 Query 26032 AGTTGCCCCTCAATGTAAACCTGTGAACCTTTCTTCAGGTACTCGCCCGCGATCTCCGCT 26091 ||| || || || |||||||| || ||||| |||||| || || || | || || Sbjct 1357 AGTGCGCCTTCGATATAAACCTGAGAGCCTTTACGCAGGTATTCACCGGCCACTTCAGCC 1298 Query 26092 ACCTTGCCAAACAGCACGACGCGATGCCATTCTGTCACTTCTTTCTTTTCGCCGGTCTGC 26151 | |||||| |||||||| ||||| |||||||| || ||||| |||||||||||||| Sbjct 1297 AGCTTGCCGAACAGCACAACGCGGTGCCATTCAGTTTTCTCTTTGGTTTCGCCGGTCTGC 1238 Query 26152 TTATCGTTCCAGCTTTCTGAGGTCGCTACGGTAATGTTGGCGACTGCGCCGCCATTAGGC 26211 || ||| |||| ||| ||||| || | || |||||||| || || |||||||| ||| Sbjct 1237 TTGTCGCGCCAGGATTCGGAGGTAGCCAGAGTGATGTTGGCAACGGCACCGCCATTCGGC 1178 Query 26212 ATGTAACGGATCTCTGGATCGTTCCCCAGGTTACCGACAAGGATTACTTTATTTACGCCG 26271 ||||| || | || || || | |||||| || ||||| | |||||||| |||||||| Sbjct 1177 ATGTAGCGAACTTCCGGGTCCTGCCCCAGATTTCCGACTAAAATTACTTTGTTTACGCCT 1118 Query 26272 CGTGATGCCATTATTTATCTTTCCAGTTA 26300 | || || | | || ||| ||| |||| Sbjct 1117 C-TGCTGGCCATGTTGCTCTCTCCGGTTA 1090 >seq136258 Length=1331 Score = 246 bits (272), Expect = 1e-60 Identities = 251/327 (77%), Gaps = 3/327 (1%) Strand=Plus/Plus Query 25950 CATCTGCATGGTTCCGCCAACGTTGACCACAATTTCAGTGGTGTAGCGCTCAACGCCGTC 26009 |||||||||||| ||||||||||| ||||| | ||| |||||||| ||||| ||| | Sbjct 25 CATCTGCATGGTACCGCCAACGTTAACCACGACTTCGGTGGTGTAACGCTCCTGGCCACC 84 Query 26010 CTTTTCC---CACTTGCGGGTTTTCAGTTGCCCCTCAATGTAAACCTGTGAACCTTTCTT 26066 || ||| || || ||||| ||| || || || || || ||||| || ||||| || Sbjct 85 CTGATCCTGCCATTTACGGGTGCGCAGCTGGCCTTCGATATAGACCTGCGACCCTTTTTT 144 Query 26067 CAGGTACTCGCCCGCGATCTCCGCTACCTTGCCAAACAGCACGACGCGATGCCATTCTGT 26126 |||||| || ||||||| || || | ||||||||||| || || || |||||||| || Sbjct 145 CAGGTATTCACCCGCGACTTCAGCCAGTTTGCCAAACAGAACCACACGGTGCCATTCAGT 204 Query 26127 CACTTCTTTCTTTTCGCCGGTCTGCTTATCGTTCCAGCTTTCTGAGGTCGCTACGGTAAT 26186 | ||||| ||||| ||||||||||| ||| ||||||||| || || || | ||||| Sbjct 205 GATCTCTTTGTTTTCACCGGTCTGCTTGTCGCGCCAGCTTTCCGACGTAGCCAGCGTAAT 264 Query 26187 GTTGGCGACTGCGCCGCCATTAGGCATGTAACGGATCTCTGGATCGTTCCCCAGGTTACC 26246 |||||| || ||||| ||||| ||||| ||||| | || ||||| | ||||| || || Sbjct 265 GTTGGCAACAGCGCCACCATTTGGCATATAACGTACTTCCGGATCCTGACCCAGATTCCC 324 Query 26247 GACAAGGATTACTTTATTTACGCCGCG 26273 |||||| || ||||| || ||||| || Sbjct 325 GACAAGAATCACTTTGTTAACGCCACG 351 >seq153502 Length=4143 Score = 224 bits (248), Expect = 3e-54 Identities = 251/334 (75%), Gaps = 5/334 (1%) Strand=Plus/Plus Query 25944 GCCGATCATCTGCATGGTTCCGCCAACGTTGACCACAATTTCAGTGGTGTAGCGCTCAAC 26003 ||| | |||||||||||| ||||||||||| || || | ||| |||||||| || || Sbjct 1925 GCCAAGCATCTGCATGGTACCGCCAACGTTAACAACCACTTCGGTGGTGTAACGATCTTG 1984 Query 26004 GCCGTCCTT----TTCCCACTTGCGGGTTTTCAGTTGCCCCTCAATGTAAACCTGTGAAC 26059 ||| |||| || ||| ||||| || |||||| || || || |||||||| || | Sbjct 1985 GCCA-CCTTGGTCTTGCCATTTGCGCGTACGCAGTTGACCTTCGATATAAACCTGAGAGC 2043 Query 26060 CTTTCTTCAGGTACTCGCCCGCGATCTCCGCTACCTTGCCAAACAGCACGACGCGATGCC 26119 |||| ||| || ||||| || | || |||| || || |||| ||| || || |||| Sbjct 2044 CTTTACGCAGATATTCGCCAGCAACTTCTGCTAATTTACCGAACAACACAACACGGTGCC 2103 Query 26120 ATTCTGTCACTTCTTTCTTTTCGCCGGTCTGCTTATCGTTCCAGCTTTCTGAGGTCGCTA 26179 |||| || | ||||| ||||| ||||| |||||||| ||||||||| ||||| || | Sbjct 2104 ATTCAGTAATCTCTTTATTTTCACCGGTTTGCTTATCACGCCAGCTTTCAGAGGTTGCCA 2163 Query 26180 CGGTAATGTTGGCGACTGCGCCGCCATTAGGCATGTAACGGATCTCTGGATCGTTCCCCA 26239 |||||||| | || || || ||||| ||||| || |||| |||||||| | |||| Sbjct 2164 GTGTAATGTTTGTCACAGCCCCTCCATTTGGCATATACCGGACTTCTGGATCTTGACCCA 2223 Query 26240 GGTTACCGACAAGGATTACTTTATTTACGCCGCG 26273 ||||||||||| || ||||| ||||||||||| Sbjct 2224 AATTACCGACAAGAATCACTTTGTTTACGCCGCG 2257 >seq20418 Length=11049 Score = 89.7 bits (98), Expect = 2e-13 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 26038 CCCTCAATGTAAACCTGTGAACCTTTCTTCAGGTACTCGCCCGCGATCTCCGCTACCTTG 26097 ||||| | ||| ||||| || || ||||||||||||||||| ||||||||||| | ||| Sbjct 7506 CCCTCGACGTAGACCTGCGAGCCCTTCTTCAGGTACTCGCCAGCGATCTCCGCGAGCTTC 7447 Query 26098 CCAAACAGCACGACGCGATGCCATTCTGT 26126 || || | |||||| || ||||||| ||| Sbjct 7446 CCGAAGAACACGACTCGGTGCCATTGTGT 7418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 158870161412686