Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_018087.3 Length=166687 Score E Sequences producing significant alignments: (Bits) Value seq65234 125 8e-24 >seq65234 Length=1614 Score = 125 bits (138), Expect = 8e-24 Identities = 558/871 (64%), Gaps = 37/871 (4%) Strand=Plus/Plus Query 141801 CATTAAATTGTTTAATTGAATACCATAATCCATATGACGAATACGGTTTTCTTCAATGCC 141860 |||||| || || | ||| | | ||||||| | |||||| | | ||||||||||| || Sbjct 649 CATTAATTTATTAATTTGTACAGCATAATCAAGATGACGTACTCTATTTTCTTCAATTCC 708 Query 141861 CTTATTGTTCTTAAGAACCATAAGGTTTTCACATTCTAAATGCCAAATAGGCCAGTACGC 141920 |||| || || | ||| | | |||||| ||||| |||||| || || | | | Sbjct 709 TCTATTATTTTTTAAAACTAATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAAAC 768 Query 141921 AGTAGCAGAACCTTTACGAATACCACCTTGAGAACATGAATGGACCGCTGCATTTTTAAG 141980 ||| || | ||| | || |||||||||||||| || | || || || ||| ||| Sbjct 769 AGTTGCGGCCCCTCCTCTAACTCCACCTTGAGAACAAGATTTTACTGC-GC-TTTGGAAG 826 Query 141981 T--TTCCAAAATGGTGTTACA-CCAGTGTGTTTAACTTCACCTGGACCAATTTTAGACCC 142037 | || |||| || | ||| || || || |||| || | || | || Sbjct 827 TGTTTATAAAAAGGAAT-ACATCCGGTATGAAATGCTTCTCCATTTCTGATAGGACTTCC 885 Query 142038 TTCGGCACGGATTGCACCACCGCCGATACCAATACCAGCACGTTTAGAAACATATTTTAC 142097 | || || ||| |||| || || || || || || |||| ||||||||||||||| Sbjct 886 TAAAGCTCGAATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTAC 945 Query 142098 AATAGCTGATGTACTTTCAGTAATTGAATCTAGGCTATCGCCGGTTTCAATTAAAACACA 142157 ||| || || | || |||| || | || |||| | ||||||||| ||||| Sbjct 946 AATTGCACTAGTTGTAGCATTAATAGAGTTTAAATTATCTGCACATTCAATTAACACACA 1005 Query 142158 TGAACTAAATTGACGAGTTGGGGTACGAACACCGGCAAGAATAGGAGTAGGTAAACTAAC 142217 |||||||||||||||||||| || | || || | | ||| || || |||| | Sbjct 1006 AGAACTAAATTGACGAGTTGGTGTTCTTACTCCTGACATAATCGGTGTGGGTA----GAG 1061 Query 142218 TTGTTTTAA----TGATGTTGCATCATAAAAATCTTTTACGTATTGAATACGTTTATCTA 142273 | |||||| || |||||| |||||| | | || | ||||| ||| | Sbjct 1062 ATATTTTAAAAGTGGAAATTGCATTATAAAAGCGCTGAATATAATTCATACGAATATTT- 1120 Query 142274 AAGGCTCATCTTGATGTAAACA--CAT--ACCAATGAGTATAAACATAAATTGTGGTGTT 142329 || | || | | ||| | ||| | || | ||| | | |||||||| || Sbjct 1121 --TTTTCGTATTTA-GAAAATAAGCATGCAGATATTAAAATATATAAAAATTGTGCACTT 1177 Query 142330 TCATAAATTTTACCAGAAGATCGATCTTTTACAAGATACTTATCTTTAACTTGCATCGCA 142389 ||||| |||| |||| | |||| || || | |||||| ||| | ||| | | Sbjct 1178 TCATATATTTCTCCAGTAACACGATTTTGTAATAAATACTTTCCTTCTAATTGTTTTACT 1237 Query 142390 CCTGCATATGTAAAATTAAAATCACGGTCATGATCGATAATTGAATTTA-AACTATCATA 142448 ||||||| | |||||| | ||||| ||||||||||| |||||| | ||| |||| Sbjct 1238 GCTGCATAAGAAAAATTCATGTCACGCCAATGATCGATAAATGAATTCATTTCTA-CATA 1296 Query 142449 GTCTGCTTTAGACCACTTTGTTAAAAGTTCTTTATCATAT------------ACACCCTG 142496 ||| ||| | ||| ||| | || || |||||| || | Sbjct 1297 TTCTTTAAAAGAATAATTTTGTAATAATTTTTCGTCATATTTTCCTAAATTGACCATTTT 1356 Query 142497 TTCTACACCA-GATTTAACATGATCATATAAATGGGGTGGATCAAATTGACCAAATACTT 142555 || |||| | ||| | || || ||| | | ||||| ||||||||||| | ||| Sbjct 1357 TTTTACATGATGATACAGAATAATGATACAGAATAGGTGGTTCAAATTGACCGTAAGCTT 1416 Query 142556 CTTTACGAAGACCAAACATTGCTAGATTTGATGCGACATATTGATAATCTGCGGATTCGA 142615 ||| | |||| ||| || || || ||| ||| | |||||||||||| | | || Sbjct 1417 TTTTCCTAAGATGAAAAATAGCAAGTCTTGCTGCCATATATTGATAATCAGGTGTATCTT 1476 Query 142616 CTTGAATGGAATCGGCTGCAACTTTAACAAT 142646 | ||| |||| |||||| |||||| ||| Sbjct 1477 CAGAAATTAAATCTGCTGCAGCTTTAATAAT 1507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 529942652720520