Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_018269.1 Length=31766 Score E Sequences producing significant alignments: (Bits) Value seq153530 105 1e-18 seq68869 102 2e-17 >seq153530 Length=10618 Score = 105 bits (116), Expect = 1e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 25059 AAATCCATGGCGAAAGAATTTAATTGTCCAATGATCGCGTTATCACAGCTTAACCGAGGT 25118 ||| || ||||||||||| | ||| ||| || |||| |||||||||||||||| | | Sbjct 9295 AAAGCCTTGGCGAAAGAACTGAATGTACCAGTGGTCGCCTTATCACAGCTTAACC--GCT 9238 Query 25119 CTTGAAAACAGACAG--GATAAGCGCCCAATTAACTCAGACTTGCGCGAGTCTGGCGCGA 25176 | | | ||| | ||||| || ||| | |||||||| ||||| ||||| || ||| Sbjct 9237 CATTGGAGCAGCGCGCAGATAAACGGCCAGTCAACTCAGATTTGCGTGAGTCAGGATCGA 9178 Query 25177 TAGAACAGGATGCTGATCTAATCGCATTGATATACCGAGACGAAGTGTATAACCCCGACA 25236 | || |||||||| || | ||| || || || || ||||| |||||| || ||| Sbjct 9177 TTGAGCAGGATGCCGACTTGATCATGTTTATCTATCGTGACGAGGTGTATCACGAAAACA 9118 Query 25237 GCTCTGACAAAGGCATTGCCGAGATTATCATTGGCAAACACAGGAATGG 25285 | | |||||||| || || ||||| || || || || | ||||| Sbjct 9117 GTGATCTTAAAGGCATCGCGGAAATTATTATCGGTAAGCAGCGTAATGG 9069 >seq68869 Length=1524 Score = 102 bits (112), Expect = 2e-17 Identities = 183/265 (69%), Gaps = 2/265 (1%) Strand=Plus/Plus Query 25022 CCGAGCTAATGAAGTATCAGAAATTTCGAAATCACTTAAATCCA-TGGCGAAAGAATTTA 25080 |||| || |||| | | |||||||| | | | |||||| || | || || ||| | Sbjct 1206 CCGAACTCTTGAAATTGCTGAAATTTCTAGAAC-CTTAAAAGCACTAGCAAAGGAACTGC 1264 Query 25081 ATTGTCCAATGATCGCGTTATCACAGCTTAACCGAGGTCTTGAAAACAGACAGGATAAGC 25140 | ||| | || || |||||||| | ||||| ||| ||| | ||| ||||| Sbjct 1265 AAGTACCAGTTATAGCATTATCACAATTAAACCGTTCTCTAGAACAAAGATCAGATAAAA 1324 Query 25141 GCCCAATTAACTCAGACTTGCGCGAGTCTGGCGCGATAGAACAGGATGCTGATCTAATCG 25200 | ||| | || ||||| |||||||||||||| | ||||||| ||||| ||| |||| Sbjct 1325 GACCAGTAAATTCAGATTTGCGCGAGTCTGGTTCTTTAGAACAAGATGCAGATTTAATAA 1384 Query 25201 CATTGATATACCGAGACGAAGTGTATAACCCCGACAGCTCTGACAAAGGCATTGCCGAGA 25260 || ||||| || |||||| | ||| || |||| | ||||| ||||| || | Sbjct 1385 TGTTTATATATCGTGACGAAATATATCACGAAAACAGTGATTTTAAAGGTATTGCTGAAA 1444 Query 25261 TTATCATTGGCAAACACAGGAATGG 25285 |||| || || ||||| || ||||| Sbjct 1445 TTATAATAGGAAAACAGAGAAATGG 1469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 100927707212256