Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_018275.1 Length=39783 Score E Sequences producing significant alignments: (Bits) Value seq36415 167 6e-37 seq201909 159 9e-35 seq413763 149 2e-31 seq422294 132 1e-26 seq153530 95.1 3e-15 seq123396 91.5 4e-14 >seq36415 Length=1575 Score = 167 bits (184), Expect = 6e-37 Identities = 501/754 (66%), Gaps = 31/754 (4%) Strand=Plus/Plus Query 19972 ACCTTCTCATCAAGCCAGTCCGCCCAAAATTGCATCATTTCTCTGCGGGTAGCCAGATAT 20031 ||||| | |||| |||||| ||||| | ||||||||||||| || || ||||||| Sbjct 285 ACCTTTCCGTCAATCCAGTCAGCCCACCACTGCATCATTTCTCGCCGCTTATCCAGATAC 344 Query 20032 GCAGCATGGTTGTAAACTGAGCGCGTCCCG--CCGCT--TA-CGTGTGCCAGCTGCATCT 20086 ||| |||||||| | || | ||| | | ||||| || ||||||| |||||| ||| Sbjct 345 TGAGCGTGGTTGTAGA-TGC-CACGTACAGATCCGCTGTTAGCGTGTGCAAGCTGCTTCT 402 Query 20087 CTATTGCGTCGCTGTTCCAGTGCTTCTCGTTGAGTACCGTGCTGAATTGATGTCTGAAAC 20146 | || || || | ||| | | ||||| | || |||||||| || || | ||||| Sbjct 403 CAATGGCATCAGCGGGCCATTCATGTTCGTTCATTATTGTGCTGAACTGGTGGCGGAAAC 462 Query 20147 CGTGTCCGCATGTCTGCCCTTCATATCCTATGCCGCGGATTACACCAAGGACGGCATTTT 20206 | || |||| | | || || |||||||| | ||| ||| ||| ||||| |||| Sbjct 463 CATGCCCGCTCGCAAGACCCTCGTATCCTATCTGCCTGATGACAAGAAGAACGGCGTTTT 522 Query 20207 CGCTGATTGGCTTCTTCCTGTCATTCCTTCCCGGGAA-GCAAAGT-TCGTACT-GTCCGG 20263 |||| || | |||||| ||||||||||||| | || |||| | | || | |||| | Sbjct 523 CGCTAATGGACTTCTTTTTGTCATTCCTTCCGGCAAACACAAAATCTGATATTGGTCCCG 582 Query 20264 TGATTTG-TTGCAGGAAT-TTGAAAAGCGCTGTAACTTGCTCTGACATTGGAACGACATG 20321 | || | || | | | ||| | | || || | |||||| ||||||| || Sbjct 583 TTATGGGCTTTAACCCCTCAAGCAAATCCACG--ACCTGTTGTGACATCGGAACGATGTG 640 Query 20322 CAGTTTTCTTCCTTTCATGAC---TTCAGGGTCAACGGTGATCAGCCTGTTTTCAAAGTC 20378 | | | || ||||| || ||| | | | ||| || |||| |||||||||| Sbjct 641 AATTCGCCGACCCTTCATCACCTGTTCGGAG---ATGGTTATAGTCCTGGTTTCAAAGTC 697 Query 20379 AAT-TCCTGACCATACCAACGAACGTAACTCCACTGTTCGCATTGCTGTATAGTGAAGAA 20437 || |||| ||||| || || || | || | ||||| | || || || ||||||| Sbjct 698 GATGTCCT-TCCATAGCATGGAGCGCAGTTCGATAGTTCGGAGCGCCGTGTACTGAAGAA 756 Query 20438 CTTGAGCAGCAATCTTACCTATAACCCAGCCTCC---ATACCCATTCAGCGCCCTCTGGA 20494 | || | || | ||| | ||| || || | ||| |||||| | | | Sbjct 757 CCTGCGTTGCCACCTT---TGAAACGATGCTCCCGGAGAAGCCAGCCAGCGCTTTATTAA 813 Query 20495 ATTCGTGAATGCGATGCATAGGTAGGAAAGGGTAGTTGTTTTTTCTGTAACCCTTCATTG 20554 | | | || | | || |||||||||||||| ||||| | || |||||||| | Sbjct 814 ACGCAGGTATCTGGTCGGCGGGAAGGAAAGGGTAGTTCTTTTTCCGATATCCCTTCATGG 873 Query 20555 CCCCAACAAGGTCTGGAGCCGGATTATATTTAGCTCTTCCGGTTACTATTGCGTAGCTGA 20614 | || | ||||| || ||||| |||||||| |||| ||||| | ||| ||||| || Sbjct 874 CGTCAGCCAGGTCAGGCGCCGGGTTATATTTGGCTCGCCCGGTAATTATCGCGTA---GA 930 Query 20615 AAACCTCGCCACACCTGCGACGAGCCTTATCAGCACGTTCCATCGCCCCTCTGTCCTCAA 20674 | || ||||| || ||||| | || |||| ||| || ||||| || || | |||| Sbjct 931 ATACTTCGCCGCATCTGCGCCTGGCTTTATTAGCGCGCTCCATGGCGCCGCGAGATTCAA 990 Query 20675 ATAGCCTGATCACCTTCAGTAGCATCATCGGCTC 20708 | || | || || | ||| | | |||| ||||| Sbjct 991 ACAGGCGAATGACTTCCAGAATCTTCATTGGCTC 1024 >seq201909 Length=21394 Score = 159 bits (176), Expect = 9e-35 Identities = 259/370 (70%), Gaps = 2/370 (1%) Strand=Plus/Minus Query 37415 GATATTGTTGGTGTATGGACTGTATGCCACGGACACACCGGAAAAGACATCATGCTCGGT 37474 ||| | || || ||||||||||| ||| |||| ||||| || |||||||| | Sbjct 4627 GATGTCGTCGGCGTATGGACTGTTTGCTACGGTCACACTGGGGCCGACATCATCAAAAGC 4568 Query 37475 AAAACGTATACCGAAGCAGAATGCAAAGCCCTCCTGAATAAAGACCTTGCCACGGTCGCC 37534 ||||| || |||||||| || ||| | || || |||||||||||||| ||||| || Sbjct 4567 AAAACCTACACCGAAGCTGAGTGCCAGGCGCTGCTGAATAAAGACCTGCGAACGGTGGCT 4508 Query 37535 AGACAAATTAACCCGTACATCAAA-GTCGATATACCGGAAACAACGCGCGGCGCTCTTTA 37593 | || ||| |||| | |||||| ||| || || || || ||||| | ||||| Sbjct 4507 AATCAGATTGACCCTTTAATCAAACGTCCG-ATCCCCGACACGACGCGAGCAGCTCTCAT 4449 Query 37594 CTCGTTCGTCTATAACGTGGGCACAGGCAATTTCAGAACATCGACGCTTCTTCGCAAAAT 37653 ||| || || ||||| ||| | || ||| | || || || || ||||| Sbjct 4448 CTCATTTTCATACAACGTCGGCGCTGGAGCATTCCGCCAGTCAACCCTGCTGAAGAAAAT 4389 Query 37654 AAACCAGGGCGATATCAAGGGCGCATGTGATCAGCTACGGCGCTGGACATACGCTGGCGG 37713 ||| || || | || ||||| | | ||||| || ||||| ||||| ||||| Sbjct 4388 CAACGCAGGTGACACTGTAGGTGCATGCAACGAACTACGCCGATGGACCTACGCAGGCGG 4329 Query 37714 TAAGCAATGGAAAGGGCTGATGACCCGTCGTGAGATTGAGCGTGAAGTCTGTTTGTGGGG 37773 ||||| |||||||| ||||||| ||| || ||||| ||||||||||| ||| ||||||| Sbjct 4328 CAAGCAGTGGAAAGGTCTGATGAACCGGCGCGAGATAGAGCGTGAAGTTTGTCTGTGGGG 4269 Query 37774 GCAACAATGA 37783 || ||||| Sbjct 4268 TCAGAAATGA 4259 >seq413763 Length=251 Score = 149 bits (164), Expect = 2e-31 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 2892 CGTTGAAGATAAAGAAGTGTATGAGGGTGTCGTCCGCCTGACAAAAGACGGTCAGCGTCT 2951 ||| || ||||||||||| || ||||| | |||||| | ||||||||||| ||||| || Sbjct 1 CGTCGAGGATAAAGAAGTCTACGAGGGCATTGTCCGCTTAACAAAAGACGGACAGCGACT 60 Query 2952 GCGCAACATGATTATGTCCTTCAACGCCGATATCGTGGCCCGTACTCCGAAGAAGAAGCC 3011 ||| |||||||||||| ||| ||||| ||||| ||||| || | || |||||||| Sbjct 61 GCGTAACATGATTATGAGCTTTAACGCTGATATTGTGGCGCGCAACCCTCGCAAGAAGCC 120 Query 3012 GTTCTTCTGGCCTGAGCAGATTGCAGGCTTTGAGCATATGTACGACGGTAACGACGATTA 3071 | || | |||||||| || | ||||| |||| |||||||| || | | || || Sbjct 121 TGTGTTTTACCCTGAGCAAATCGAAGGCTATGAGTATATGTACTCAGGCGATGCGGACTA 180 Query 3072 CCCGTACTACCTGCTCAATCGCACTGATGAAAACA 3106 |||||| |||||| | || || || || |||| || Sbjct 181 CCCGTATTACCTGATGAACCGTACCGACGAAAGCA 215 >seq422294 Length=259 Score = 132 bits (146), Expect = 1e-26 Identities = 184/255 (72%), Gaps = 2/255 (1%) Strand=Plus/Minus Query 4243 CGATAATGCCAACGACAATGCAGGTCAGGAAGAGGGCTTTGAGATTGTCCTGAATGGCGA 4302 |||||||||||||| | || || || |||||||| |||||||||||| ||| || Sbjct 259 CGATAATGCCAACGGTGGCGAGGGGCAAGATGAGGGCTTCGAGATTGTCCTGTCTGGTGA 200 Query 4303 TGAGACAGCACCAAAACAAGACCCGGCAAAGAACGCAGAATTCGC-CCGCCGCCGCATCG 4361 ||||| | | |||||||||||||||| ||||| | || || | | || ||||| | Sbjct 199 CGAGACTGAAAAGAAACAAGACCCGGCAACCAACGCGAAGTTTGCACAGGCG-CGCATTG 141 Query 4362 AGCGCAAACGACAGCGCGAGCTTGAGCAGCAGATGGAAGCAGTTAAACGCGGAGAATTGC 4421 | || || || || ||||| | || ||||| | ||||| ||| || || || ||| Sbjct 140 AACGTAAGCGCCAACGCGAATTAGAACAGCAACTTGAAGCTGTTCGCCGTGGCGAGGTGC 81 Query 4422 CGGAGAGTTTACGGGTAAACCCTGACCTTCCACCTCAGCCGGATATTAATGCCTATCTGT 4481 |||||| | || ||||| |||||| | || |||||||| || || || ||||| | Sbjct 80 CGGAGACGCTGCGTGTAAATCCTGACTTACCGCCTCAGCCTGACATCAACCAGTATCTCT 21 Query 4482 CAGAAGAAGGCCTGG 4496 | || |||||| ||| Sbjct 20 CCGATGAAGGCTTGG 6 >seq153530 Length=10618 Score = 95.1 bits (104), Expect = 3e-15 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 32340 TGAAAGCGATGGCGAAAGACCTGAAAACTCCTGTTATCTCCCTAAGCCAGCTCTCCCGCG 32399 ||||||| |||||||||| ||||| || || || || || ||||| |||| Sbjct 9297 TGAAAGCCTTGGCGAAAGAACTGAATGTACCAGTGGTCGCCTTATCACAGCTTAACCGCT 9238 Query 32400 ATGTTGAGAAGCGACCAAACAAACGCCCGACAAACGCAGATTTGCGTGATTCAGGAAGCA 32459 | ||| |||| || | ||||| || ||| ||||||||||||| |||||| | Sbjct 9237 CATTGGAGCAGCGCGCAGATAAACGGCCAGTCAACTCAGATTTGCGTGAGTCAGGATCGA 9178 Query 32460 TTGAACAGGATGCAGACTCAATCATCATGCTCTATCGGGAAGCGGTATATGACGAGAACA 32519 |||| |||||||| |||| ||||| | ||||||| || | ||| ||| |||| |||| Sbjct 9177 TTGAGCAGGATGCCGACTTGATCATGTTTATCTATCGTGACGAGGTGTATCACGAAAACA 9118 Query 32520 GT 32521 || Sbjct 9117 GT 9116 >seq123396 Length=12579 Score = 91.5 bits (100), Expect = 4e-14 Identities = 179/265 (68%), Gaps = 0/265 (0%) Strand=Plus/Minus Query 29056 TTTTGCGTCAACAACTACGCCAATGATTTTGCAGTTTCCGTTGATTTCTATCATCGGATA 29115 |||||| || || ||||| |||| ||| ||||||| ||||| || || | ||| || Sbjct 7553 TTTTGCTTCTACGACTACACCAACAATTCTGCAGTTACCGTTTATGGGTAGTAGCGGGTA 7494 Query 29116 TTGTGGGTTTAATGGTTTTAAAAACTTTCGGCCTGCATCCATAACTAATTTTTTGAATGT 29175 ||||| | |||||||||||| || | || ||| ||||| |||||||||| || Sbjct 7493 GCTAGGGTTAAGTGGTTTTAAAAATTTCCTACCACTATCAATAACATATTTTTTGAAAGT 7434 Query 29176 GGCCTCGTTTTCACCTTCTAATTTTGCAACAACCAGCTTGCCGTTTCTTGGTTCGACTTC 29235 |||||||| | || | ||| || ||||| | | || || | || || | Sbjct 7433 AGCCTCGTTCGTGTCATCAAGTTTGGCCACAACTAAGCTACCATTCTTAGGCTCTTTACC 7374 Query 29236 GGGATCAACCAGAATTATCATTCCTTCTGGAATGCTTAACCCTGCCGGTGCTGTCATAGA 29295 | || || | || ||| ||||| || ||||||| || | | | |||||| || Sbjct 7373 TGTGTCTACTAAGATCGCCATGCCTTCAGGGATGCTTATGCCGCTCTGAGATGTCATTGA 7314 Query 29296 GTCACCTTGGACATCAAGCCAAAAT 29320 |||||| || ||| |||||| ||| Sbjct 7313 GTCACCCTGTACACGAAGCCAGAAT 7289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126430021531490