Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_018454.1 Length=39974 Score E Sequences producing significant alignments: (Bits) Value seq150516 897 0.0 seq201909 224 3e-54 seq37562 134 4e-27 seq79893 107 5e-19 >seq150516 Length=8092 Score = 897 bits (994), Expect = 0.0 Identities = 1067/1447 (74%), Gaps = 6/1447 (0%) Strand=Plus/Minus Query 17495 ACTTTCCGACCTGATGGATGAGCTTTCAGGGGGTGCCTGATGGCGCTTAGACCTGAACAC 17554 |||||| |||||||||||| ||| || ||| || | ||| | |||||| ||| Sbjct 2173 ACTTTCTGACCTGATGGATTCGCTGTCTCAGGGGGCGTAATG------AAACCTGAGCAC 2120 Query 17555 CTCGCACGGCTAAGGGATAAATTCTGGCGGCTTAACCACCTGTACTGGATCACCGACAAA 17614 ||| ||| || ||| |||||| || || | || |||||||| ||||| ||| Sbjct 2119 CTCAAGTTGCTGGCAGACAAAGACTGGCGCCTGAATAATCTCTACTGGATTACCGATAAA 2060 Query 17615 CGCGGGAAGCCGGTACGTTTCAAAATGACCCCGGAGCAGTTGGCCTACTTCGAGGGGATG 17674 || ||||| ||| |||| ||||| || |||||| | |||||||| || || Sbjct 2059 GAAGGAAAGCCAACACGCTTCAGGATGACTCCTGAGCAGCGCGAATACTTCGAAGGAATC 2000 Query 17675 CATACACGAAACATCATCCTGAAAGCGCGCCAGCTCGGTTTTACAACGCTGGTGTGCATC 17734 || || || ||||||||||||||||| |||||||| |||||||| || ||||||||| Sbjct 1999 CACACCCGCAACATCATCCTGAAAGCACGCCAGCTTGGTTTTACGACTGAGGTGTGCATT 1940 Query 17735 ATTCAGCTCGATGCCGCGCTCTTTGAGGGCGCAAAGTGCGCGCTTATCGCTCACACCCTC 17794 || ||||| ||||| ||| | || ||| || ||||| ||||| ||||| ||||| || Sbjct 1939 ATCCAGCTGGATGCGGCGTTGTTCGAGTCTGCGAAGTGTGCGCTGATCGCCCACACACTT 1880 Query 17795 AATGACGCAAAGCGCCTTTTCCGGGAGAAAATCAAATATGCCTATGATCGACTGCCTGCT 17854 || ||||| ||||| || ||||| ||||| | |||| ||||| || ||||||| Sbjct 1879 AACGACGCCAAGCGGCTGTTCCGTGAGAAGGTGAAATTCGCCTACGACAATCTGCCTGAA 1820 Query 17855 GAGATCCGGGCGGCTAATCCTGCGTCTAATGATGCCGCTGGCGAGCTGGTTTTTAAGAAG 17914 ||||| ||||||||| || || |||||| | || || ||| |||| ||||||||| Sbjct 1819 GAGATTAAGGCGGCTAACCCGGCCAGTAATGACTCTGCAGGGGAGTTGGTATTTAAGAAG 1760 Query 17915 GGCGGCTCGCTCTATGTTTCGACATCGTTTCGTGGCGGCACGCTGCGCTATCTTCATGTG 17974 ||||| ||||| || || || || ||||||||||||||||||||||| || || || Sbjct 1759 GGCGGGTCGCTTTACGTCAGCACCTCATTTCGTGGCGGCACGCTGCGCTACCTGCACGTT 1700 Query 17975 TCCGAGTTCGGGAAGATCTGCGCAAAGTACCCGGACAAGGCGCGCGAAATTGTCACTGGT 18034 |||||||| |||||||| ||||| ||||| || || ||||| || || |||||||||||| Sbjct 1699 TCCGAGTTTGGGAAGATATGCGCCAAGTATCCAGATAAGGCCCGTGAGATTGTCACTGGT 1640 Query 18035 GCTTTTGAAGCTGTTTCAACTGACTGTTTCACGACGATTGAAAGCACAGCAGAAGGCCGC 18094 || ||||| || || ||||| | || || |||| || || ||||| ||||| || || Sbjct 1639 GCGTTTGAGGCAGTATCAACCGGATGCTTTGCGACTATCGAGAGCACGGCAGAGGGGCGA 1580 Query 18095 GCGGGCTATTTCTTCGATTATTGCCAGACTGCGGAAAAAGCGGCGCTATCTGGTGCGCCC 18154 ||||| || |||||||||||||||||||| || ||||| || | | || |||| Sbjct 1579 GCGGGTTACTTCTTCGATTATTGCCAGACAGCTGAAAAGGCCTCATTGCAGGGCAAGCCC 1520 Query 18155 CTCTCTCAACTGAGCTGGAAATTCTTCTTTTTCAGCTGGTGGATGAACCCCCAGTATGCA 18214 || || | ||| |||||| |||||||| ||| ||||||| ||| || ||||| ||| Sbjct 1519 CTTTCCCCGCTGGACTGGAAGTTCTTCTTCTTCTCTTGGTGGAAGAATCCGCAGTACGCA 1460 Query 18215 ATCGACCCCGTAGAGCCGCTATCACAGCGCCTGCGCGATTATTTCGATGAGCTGGAGGCA 18274 |||||||| ||||| | || | ||||||||| ||||| ||||||||| |||| || Sbjct 1459 ATCGACCCGGTAGAAGCATTACCGCAGCGCCTGGTTGATTACTTCGATGAGATGGAAGCC 1400 Query 18275 AAGCACCGCCTTACGCTCAACGACCGCCAGAAAGCGTGGTATCAGGCCAAAGAAACCACC 18334 |||||| || | | |||||||| ||||||||| | ||||| | |||||||| | || Sbjct 1399 AAGCACGGCGTAATTCTCAACGAGCGCCAGAAATCCTGGTACTACGCCAAAGAGAAAACG 1340 Query 18335 CTCGGCGACGACATGAAACGGGAATACCCGTCTATCCCCGCCGAGGCGTTCCAGCAGTCC 18394 |||||||| |||||||| || || || ||| | || || || ||||| |||||||| || Sbjct 1339 CTCGGCGATGACATGAAGCGTGAGTATCCGACGATGCCTGCTGAGGCATTCCAGCAATCA 1280 Query 18395 GTTGAAGGCGCTTACTACGCGAAACAGTTCGCGTTTCTCTACGCACAGCGCCGCATCGGC 18454 || ||||||||||||||||| || |||||| | |||||| | | ||||| ||| Sbjct 1279 GTCGAAGGCGCTTACTACGCCAAGCAGTTCCGCTGGCTCTACACCAACAAACGCATTGGC 1220 Query 18455 CAGTTGCCGGATAACGATCACCTTCCTGTTTACACGTTCTGGGATATCGGCGTCGGTGAC 18514 | |||| |||||| ||||| || ||| |||||||||||||||| ||||| |||||| Sbjct 1219 ACGCTGCCTGATAACTCACACCTGCCGGTTCACACGTTCTGGGATATAGGCGTGGGTGAC 1160 Query 18515 TCAACGGCTATCTGGTTTGTGCGCGTGGTGGGGAACGAGTTCCACATCATCGACTACTAC 18574 |||||||| |||||||| ||||| | ||||| | || ||||||||||||||||| ||| Sbjct 1159 TCAACGGCCATCTGGTTCGTGCGTGAAGTGGGCGAAGAATTCCACATCATCGACTATTAC 1100 Query 18575 GAGAACAGCGGCGAAGGGCTTCGCCATTACATGAAGATCCTTAAAGAAAAGGGATACACC 18634 || ||| || ||||| || || || ||||||||| | || ||||| || || Sbjct 1099 GAAAACTCAGGTGAAGGCCTGCGTCACTACATGAAGGTGCTGAAAGACCGAGGCTATGAG 1040 Query 18635 TACGCCGAACACTGGGCGCCCCACGATATAGACAACCGCGAGTTTGCGAACGACGGCAAA 18694 |||| || ||||||| ||| || || || || ||||| ||||| | |||| |||| Sbjct 1039 TACGGTGAGCACTGGGGGCCGCATGACATCGAAAACCGAGAGTTCGGTTCTGACGCCAAA 980 Query 18695 TCCCGCCGCCAGCTTGCGCGTGAGGGTTATGAGGTGGACGGCGAAATCTATTCGATCTCG 18754 |||||| |||| ||||| || || || || | ||||| | | || || || | Sbjct 979 TCCCGCAAAGAGCTGGCGCGCGAAGGGTACGAAATCGACGGTCAGACTTACTCCATGACA 920 Query 18755 TTCAGTGTGGTGCCGAAGCTCGGTGTTGCTGAGGGGATCGAGCTGGTGCGCGAAATCCTG 18814 |||| || ||||| || || |||| | || || ||| ||||| ||||| ||| Sbjct 919 TTCAAGGTTGTGCCAAAAACTGGAGTTGATACTGGTATTGAGTCCGTGCGTGAAATTCTG 860 Query 18815 CCCCGCTGCGCTTTTGACAGCGTGAAATGCGAGGAAGGGATAAGCCACCTGGAAGCCTAC 18874 || || | ||| ||| | ||| |||| ||||| || | |||||| || | ||| Sbjct 859 CCTAAGTGTGTTTTCGACGAAGAGAAGTGCGCAGAAGGTATTACCCACCTTGAGGGCTAT 800 Query 18875 CGCAAGGAGTGGGATGCCAAGCGCGGCTGCTGGAAAGACAACCCTTTGCACGACTACACC 18934 || || |||||||| | ||||||||||||||||||||||| || | ||||| | || Sbjct 799 CGTAAAGAGTGGGACGAAAAGCGCGGCTGCTGGAAAGACAAGCCACTTCACGATCATACA 740 Query 18935 TCGCACG 18941 || |||| Sbjct 739 TCACACG 733 >seq201909 Length=21394 Score = 224 bits (248), Expect = 3e-54 Identities = 207/258 (80%), Gaps = 8/258 (3%) Strand=Plus/Minus Query 17010 ATGGCACTCACCGACAAACAAGAAATGTTCTGTCGCGAGTACCTCATCGACTTAAACGCC 17069 |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| Sbjct 2762 ATGGCACTCACCGACAAACAAGAAATGTTCTGTCGCGAGTACCTCATCGATTTGAACGCC 2703 Query 17070 ACACAGGCGGCGATTCGGGCGGGGTACAGCGTCAAAACGGCTAACCG---CACCGCCTCC 17126 || || ||||| ||||||||||||||||||| || || || ||| | | Sbjct 2702 ACGCAAGCGGCAATTCGGGCGGGGTACAGCGAAAATACCGC---CCGGAAGATTGGTAGT 2646 Query 17127 GAAAACCTGTCAAAACCTGACATCCAAAACAGAATCGCTGAACTCAAGAATA-AGCGCAA 17185 || ||||| |||||||| |||||||| ||||||||||| ||||| || | || | ||||| Sbjct 2645 GAGAACCTCTCAAAACCAGACATCCAGAACAGAATCGCCGAACTTAA-AGTACAACGCAA 2587 Query 17186 CGAGGACGTGGGTATAAATGCTGCTTATGTGCTCCAGCGCTTAGTTGAGATTGACCAGAT 17245 |||| | || || |||||||||||||||| | ||| | || ||||||||| |||| Sbjct 2586 CGAGCAAGTAAACATTGATGCTGCTTATGTGCTTCGCCGCCTGGTGGAGATTGACAAGAT 2527 Query 17246 GGACGTGGCCGACATTCT 17263 ||||||| |||||| || Sbjct 2526 GGACGTGCTCGACATCCT 2509 >seq37562 Length=17931 Score = 134 bits (148), Expect = 4e-27 Identities = 254/369 (69%), Gaps = 6/369 (2%) Strand=Plus/Minus Query 3283 GTTGGCCCGCGTATGGTTTCCGCCATTCATGCGCGTTTGCGCGTTAAGCAGGTGCAAAAA 3342 |||| |||| || | || ||| |||||||| |||| ||||| |||| || || || Sbjct 11673 GTTGCCCCGGGTGTAATTCCCGGGGTTCATGCGGGTTTCAGCGTTGAGCATGTCCAGAAG 11614 Query 3343 GTC-GTGAAAATCCTCAATTTCGCCAGCTTCC--AGCGCTTTATTGATGTGCTGCTCTGC 3399 ||| ||||| || | || || | | | | || ||| |||| | |||| ||||| Sbjct 11613 GTCCGTGAAG-TCATGGAT--CGTCTGGTCACTAAGGGCTGCGTTGAAGCGCTGTTCTGC 11557 Query 3400 CAGTTGGTTGAGTTTAACCCATGTAAAGCCCTTCATGGTGCGCACCGTAAAGCCCCAGGC 3459 | | |||| || ||||| || || ||| ||| || ||||||||| || Sbjct 11556 CCGGCCATTGAACTTCACCCAGGTGAAAAGGAACATCTGGCGAACGTCAAAGCCCCACGC 11497 Query 3460 TTCGGCCAGATCCATAGCTTCACGGTTGTGGGTGCCGGTGTACCACATCGCCAGAACGGC 3519 || ||||| || ||||| ||| || || || |||||||||||| ||| ||| || Sbjct 11496 CTCCGCCAGCTCACGGGCTTCCTGGTCATGCGTACCCGTGTACCACATCACCAAAACAGC 11437 Query 3520 GTTTTCTGCGGCCAGCTCCCACACAGGGAGGCGTTTCATATCGATCAAGCTCATGGTGTC 3579 ||| || || | |||||||||||| ||||| | ||||| |||| | | | |||||||||| Sbjct 11436 GTTATCGGCTGACAGCTCCCACACGGGGAGCCTTTTCAGATCGGTGATGGTCATGGTGTC 11377 Query 3580 GTAATGGCTGGCTGCCGCGCCGTTGCTTACTGTGTTGCCGTAGCTCCACGCGGGATCTGC 3639 ||| || | | ||||| ||| ||| | ||||| ||||| ||| | ||||| || Sbjct 11376 GTAGTGATTACCAGCCGCACCGCGGCTGATAGTGTTTCCGTACTGCCATGGCGGATCAGC 11317 Query 3640 ATAGATAAG 3648 || || || Sbjct 11316 GTATATCAG 11308 >seq79893 Length=11432 Score = 107 bits (118), Expect = 5e-19 Identities = 290/442 (66%), Gaps = 10/442 (2%) Strand=Plus/Plus Query 33447 AAGCTGCGCTATCCGAACACCGCCTTACTCTACATGGAATTTGATTCGAGCCAGTTTAAC 33506 || ||||| || ||||| || || | |||||| | || |||||| | |||||||||| Sbjct 8768 AAACTGCGTTACCCGAATACAGCACTGCTCTACGTCGAGTTTGATGCCGCCCAGTTTAAC 8827 Query 33507 GGCTCTATTCCGCAAATCTCCTGCGAGCCGCGCGGGCGTGTCATTCGCGTTCCTGCGAAC 33566 ||| | || || | ||||| ||| || || ||||| || || ||||| Sbjct 8828 GGCAATGCACCTAAAGTTACCTGCAGGCCAAAAGGCCGCAGGATTCGGGTGCCGTCGAAC 8887 Query 33567 TATGACCCCGACACCCGCAGCTATACCGGCACCTGGGATGGCACGTTTAAATGGGCGTGG 33626 || |||||| |||||| ||||||||| | ||||| |||| ||| ||||||| Sbjct 8888 TACAACCCCGTCACCCGGGAGTATACCGGCGCGTGGGACGGCAATTTTGTGTGGGCGTTC 8947 Query 33627 ACGGATAACCCGGCCTGGGTGTTTTACGACCTGGTGATCACTGATCGCTTCGGACTCGGC 33686 | ||||||| || ||| | ||||| ||||||||| | | | | |||||| | || Sbjct 8948 AGTAATAACCCTGCATGGATTTTTTATGACCTGGTGCTGAATAAAATTTTCGGAATGGGA 9007 Query 33687 GACCGGCTGGACGCCGATAACGTGGACAAATGGGCGCTCTA--CCAGGTGGCGCAATACT 33744 |||| | || ||| | | ||||| |||| ||| || ||| | || |||| Sbjct 9008 AACCGTGTCGATGCCTCCATGATTGACAAGTGGGAGCTATATTCCA--TCGCAGCTTACT 9065 Query 33745 GCGATCAGATGGTGCCGGACGGCAGGGGCGGCGACGGCAAAGAGCCACGCTATATGTGCA 33804 ||||| | | ||| | || |||| | ||| | || || || | || || | Sbjct 9066 GCGATGAAAAGGTATCTAAC------GGCGCTGGCGGTACTGAACCGCGTTTTACCTGTA 9119 Query 33805 ACGTCTACGTGCAGAGCCGGGCCGACGCATTCACGGTTTTGCGCGACTTTGCGGCCATCT 33864 |||| || | ||||||| | ||||| | | ||| || || | || || |||| Sbjct 9120 ACGTTTATATCCAGAGCCAGCAGGACGCGTATAACGTTCTGAAGGATATCGCAGCAATCT 9179 Query 33865 TCCGGGGCATGACTTACTGGGG 33886 ||||||| || || | |||||| Sbjct 9180 TCCGGGGAATTACCTTCTGGGG 9201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127037598185472