Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_018846.1 Length=60894 Score E Sequences producing significant alignments: (Bits) Value seq123396 410 5e-110 seq201909 338 2e-88 seq449472 158 5e-34 seq369136 138 4e-28 seq147806 113 2e-20 seq189010 109 2e-19 seq286911 102 3e-17 seq462907 98.7 4e-16 seq203346 86.0 2e-12 >seq123396 Length=12579 Score = 410 bits (454), Expect = 5e-110 Identities = 843/1228 (69%), Gaps = 33/1228 (3%) Strand=Plus/Minus Query 19228 ACCAGACAGCGGAACGTTTCACCGAATACGGTTTGCCGTGGGAAGAAATCAGTTTTGTAT 19287 ||||||| || | || || | | ||||||||||| ||| ||||||| | ||| | Sbjct 5314 ACCAGACTGCTCAGCGGTTTATACAGTACGGTTTGCCAGAGGAGCAAATCAGCTATGTCT 5255 Query 19288 GGCGTGATCACC---CTAACTATGACCCGTCACGACTGATTCAGATTGCCAGTGCCGACA 19344 |||| ||| ||| || || || | | ||||| ||||||||||| || |||| Sbjct 5254 GGCGCGATTACCAGCCTCACGATCA---GAGCCGACTAATTCAGATTGCTTCAGCAGACA 5198 Query 19345 CGCTGATCCGTCGTGAGTTTCCTGACAACATCGATCTGCTGATCATCGATGAAGCACACA 19404 | |||||||| | |||||||||||||||||||| || || || |||||||||| |||| Sbjct 5197 CACTGATCCGCAGGGAGTTTCCTGACAACATCGACCTACTCATTGTCGATGAAGCTCACA 5138 Query 19405 TGAAGCGTCGTGCGTTACTTGAGGTTATCCGGGACAAAGATATCAGGGTTCTTGGGCTTT 19464 ||||||||||||| || |||||| ||||||| ||| || || | ||| | ||||| | Sbjct 5137 TGAAGCGTCGTGCCTTGCTTGAGATTATCCGCGACCGCGACATTCGTGTTGTCGGGCTGT 5078 Query 19465 CCGGCACCCCGTTCGCAGCCTGGATGGGGAAGTACTACGAATGCCTGATCAAGCCTACAA 19524 | || || || ||| | | |||||||| |||| ||||| |||| ||||| || || | Sbjct 5077 CTGGAACGCCTTTCTCGCCGTGGATGGGCCAGTATTACGAGCGCCTCATCAAACCCACCA 5018 Query 19525 CGATTCGTGAACTTATTCAGC-GTGGTGATCTGAGCGATTATGAGTTTTTTGCCCCCTCA 19583 |||| || || | | ||| |||||| || || || || |||| || || | Sbjct 5017 CGATGAAAGAGCTGA-TAAGCATTGGTGACCTTAGTCCCTACGAATTTTACGCGCCGACT 4959 Query 19584 ATGCCTGATCTGGCTGGCGTAAAAA---CCAGTAACACCGTATTTGGACGGGATTACAAC 19640 | ||||| || || ||||||| |||| | | ||||||||| || |||||| Sbjct 4958 ACACCTGACTTGAAAGGGGTAAAAACTTCCAGCCTGTCGGGATTTGGACGCGACTACAAC 4899 Query 19641 GAGGAACAGCTCGCATCCATCATGGGGAGTTCGGATCTGGTTGGCGATATCGTCAGCAAC 19700 || || ||| | || || ||||| | | | | |||| |||||||||||||||||| Sbjct 4898 GAAGACCAGTTGGCCGAGATTATGGGTGATGCCGCTTTGGTGGGCGATATCGTCAGCAAC 4839 Query 19701 TGGCTTGAGAATGGCGAGGATTTACCGACGATCTGCTTCTGCGTGAATGTGGCTCATGCG 19760 ||||| |||| |||||||| || || | |||||||| || || | ||||||| Sbjct 4838 TGGCTGCAGAACGGCGAGGACCGGCCAACTGTTTGCTTCTGTGTCAACCAGTCTCATGCC 4779 Query 19761 AACTTTGTTACCCGTGAGTTTTTACAGT-CTGGCATTGGC-GCAGAGGTGATGACGGCAG 19818 || | || |||| ||| || || |||| | |||| || ||| | |||| | | Sbjct 4778 GGGTTCATAACGACTGAG-TTTAACCGTGCTGG-AGTGGCGGCGGAGATCATGATTGATG 4721 Query 19819 ATACCCCCCATGATGAACGACAGGACATCATTCGCCGTTTTGAAGAGGGTGCGACCAAAA 19878 || || | |||||||| | || |||| || || ||| |||| | || || | Sbjct 4720 CCACTCCGCCAGATGAACGTCGAATGATTATTCATCGCTTCGAACAGGGCGTAACGAAGA 4661 Query 19879 TAATTGTCAACGTTGGCGTACTGGTTGCGGGATTTGACAGCGATGTTCGCTGCCTGATCT 19938 |||| || |||||||| || ||| || || |||||||||||||| || ||| | |||| Sbjct 4660 TAATCGTTAACGTTGGTGTGCTGACCGCAGGCTTTGACAGCGATGTACGGTGCATCATCT 4601 Query 19939 ACGCCCGTCCGACCAAATCAGAAATCCGCTGGTTGCAGTGCATCGGGAGAGCGTTACGTA 19998 | |||||||| || ||||||||||| |||||| | ||| | || | | | || | Sbjct 4600 ATGCCCGTCCAACAAAATCAGAAATGCGCTGGATTCAGGTGTTGGGTCGCGGACTCCGCA 4541 Query 19999 CTGCGTCTGGTAAAAAACGCGCATTGATTTTCGACCATTCCGGCACGGTTCATCGGCTGG 20058 | || | || ||| | | ||||||| || || ||| | | || || |||| Sbjct 4540 CGGCACCAGGGAAAGACCATTGTCTGATTTTTGATCACAGCGGTAGCATACACCGCCTGG 4481 Query 20059 GCTTCCCCGAGGATATCGAGTATGACGAACTTCCG-GGAAAAAATGACGGAATGAAAGCG 20117 ||| ||| || || ||||||||||||| |||| | || |||| |||||| |||||| | Sbjct 4480 GCTACCCGGATGACATCGAGTATGACG-ACTTGAGCGGCAAAAGTGACGGCATGAAATCA 4422 Query 20118 TCTGCTGGCGGGAGTGA---GGTTAAGGCTGAGAAACTTCCCAGGGAATGCCCCAAATGC 20174 |||| || | || || | ||| ||||| |||| || || | | ||| Sbjct 4421 GCTGCAGGTAGTAGCGAACCTGAGAAGATCGAGAAGAAACCCAAAGAGTGTTCGCAGTGC 4362 Query 20175 CACTTCATGAAGCCTGCTGGCGTGCATATGTGTCCCAAATGTGGATTTCGTCCTCTTGGT 20234 || ||||||||||||||||| || || | || || || |||||||| ||| | ||| Sbjct 4361 CATTTCATGAAGCCTGCTGGGGTATATGTATGCCCGAAGTGTGGATTCAAGCCTGTAGGT 4302 Query 20235 GGTGATGACGTGGCGACAGATCGCGA-TCGTAAGCTTTCACGCGTCAACAAAGGGAAACG 20293 || || |||| | || || | | | || || | | ||| || | | || ||||| Sbjct 4301 GGAGAGAACGTAGAAACGGA-CACTACCCGCAAAC-TGCAC-CGCCTA-AAGGGGAATGT 4246 Query 20294 C-GAA--TACACCCGTGAGGAAAAACAGCGTTGGTGGAGCGAGATCAAGGGGTATCAGAA 20350 | ||| || | ||| |||| || ||| |||||||| ||||||||||||| ||| Sbjct 4245 CAGAACCTATAGCCGCAAGGATAAGCAGTCATGGTGGAGTCAGATCAAGGGGTACCAGCG 4186 Query 20351 TTACCGC-AAC---GCGACAGGTAAGCCACTGAGTGACGGATGGTGTGCTCATACCTACA 20406 |||||| || | | |||||| | ||| |||||||| |||||||| | || Sbjct 4185 CTACCGCGCACTTAGTG-GTGGTAAGAATTTATCTGATGGATGGTGCGCTCATACTTTCA 4127 Query 20407 AGGAGAAGTTCGGGGTTTGGCCTAAAGG 20434 ||| |||||||| | ||||| || || Sbjct 4126 GGGATAAGTTCGGAGAATGGCCAAATGG 4099 Score = 86.0 bits (94), Expect = 2e-12 Identities = 140/202 (69%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 21134 TGCAGCATGCCAAATCGGTGGCAATACGCCTGTATCCGGTGTCGTCCACTCTGGGGATAG 21193 || || |||| | || || |||||||| || | || || | || || || || || | Sbjct 3395 TGGAGTATGCGACTTCAGTCGCAATACGTCTTTTCCCTGTTGCATCAACGCTAGGAATCG 3336 Query 21194 CCGAGGGTATCGAAACTGCGCTTTCATGCCGTCAAATCTTCCGCTGCAATGTGTGGTCAA 21253 | ||||| || ||||||||||||||||| || ||| | | ||| |||||| Sbjct 3335 CTGAGGGAATTGAAACTGCGCTTTCATGTAAGCAGCTCTATCACGTTAATACCTGGTCAG 3276 Query 21254 CAATGAACTCCGGTTTTATGGAGAAGTTCATTGCGCCACCTGGCGTTAATCACCTGATTA 21313 || |||||| ||||||| ||| || || |||||| |||| ||||| || ||| ||| Sbjct 3275 TTATCAACTCCAACTTTATGGCGAAATTTATCGCGCCAGCTGGAGTTAAGCATCTGGTTA 3216 Query 21314 TCTTTGCTGACAATGATGCGCA 21335 | || | || | ||| |||| Sbjct 3215 TTTTCACGGATATGGATCCGCA 3194 >seq201909 Length=21394 Score = 338 bits (374), Expect = 2e-88 Identities = 437/601 (73%), Gaps = 2/601 (0%) Strand=Plus/Minus Query 9752 CCCCCATTGTTCTCCAAATACAAAACCAATTTCCGCCAGTGCTTCGTCCATTTTGTCGAT 9811 || |||||| || ||||| | || || ||||| || || | ||||||||| ||||| Sbjct 20627 CCGCCATTGGTCGCCAAACTCGAAGCCTATTTCAGCGAGCGAGATGTCCATTTTCTCGAT 20568 Query 9812 GAACTCCGGCACCATCTCATCAAAACTCGCCATGTACTTTTCATCCCGCTCGACCACGAC 9871 ||||||||||||||| || ||||| | ||||| ||||| || ||||| || | | Sbjct 20567 GAACTCCGGCACCATTTCCTCAAAGTCAGAAATGTATTTTTCGTCACGCTCAACGATAAT 20508 Query 9872 ATAATGCAGGCCTTCACGCTTCATGCGTGGGTCGTAGTTGGCGAAGTACCAGGCGTCCTT 9931 | ||| | ||||||||||||||||| ||||| ||||| ||||| |||||||| ||||| Sbjct 20507 GTGATGAATACCTTCACGCTTCATGCGAGGGTCATAGTTCGCGAAATACCAGGCATCCTT 20448 Query 9932 GTCTGTAACCCACATGCTGAATTGCACCTGGGCCATGTAAGCAGGCTTGATAGCGTCAAA 9991 | | || |||||||||||| ||||||||||||||||||| ||| ||||| || || || Sbjct 20447 GCCCGTTACCCACATGCTGTATTGCACCTGGGCCATGTACGCACTTTTGATGGCATCGAA 20388 Query 9992 GCCGCCAAGCCGGAATTTCATGAAGTCGCGGGAAGTAAAAGGGCATTTAAGCTCAAGACC 10051 || ||||||||||| |||||||| ||||| ||||| |||||||| || | || || || Sbjct 20387 ACCACCAAGCCGGAACTTCATGAAATCGCGAGAAGTGAAAGGGCACTTCAATTCGAGGCC 20328 Query 10052 GTTACCGTCGCTGCATAAACCGTCGGGAGAGCAGGCGGTGCGCATGCTTTCGTCACGAAA 10111 || || ||||| | ||||| || ||||| ||||| |||| || || ||| | Sbjct 20327 TCGCCCATCACTGCAAATCCCGTCAGGTGAGCACGCGGTACGCAAAGAATCATCGCGATA 20268 Query 10112 AATTATTGGCGTTTCCGAGACGGTAACATCCGCGATAAATTCGAAGAGGGCACGGGCATC 10171 | ||||||| || | || | || | | | | || || || || || | || Sbjct 20267 GAGGATTGGCGCCTCAGTTACAGATACGCCAGTGGTGAACTCAAAAAGAGCTCTCGCTGA 20208 Query 10172 ATCTTCGTATTGCTTTCCCCATGCGAGCGACTTAGCGTTAACTTCCGGTGCCACGCCAGT 10231 ||||| | ||||| ||||| || || | ||| || || || ||||| ||||||||||| Sbjct 20207 GTCTTCATGCTGCTTACCCCACGCAAGTGCCTTGGCATTCACCTCCGGAGCCACGCCAGT 20148 Query 10232 ACAAACTTCAGCCAGCAGGGTGTGGAAGTATGACATTTTTGTATCAGGCCATTTGCTGCC 10291 || || || || | || ||||||||| ||||| || | || | ||||||| |||| Sbjct 20147 GCATACCTCTGCTAACAACTCGTGGAAGTAGGACATCTTCATGTCCGTCCATTTGGTGCC 20088 Query 10292 GGAACGTGGCTTTGCTATCACATTGTGA-ACTTCTGAAGCAGTGATAACACCGAGTCTCA 10350 | |||||||||| || || || ||| || || || || || || ||||||| || Sbjct 20087 GCTGCGTGGCTTTGAAATGACGTT-TGATACACACGACGCCGTAATGACGCCGAGTCGCA 20029 Query 10351 G 10351 | Sbjct 20028 G 20028 >seq449472 Length=298 Score = 158 bits (174), Expect = 5e-34 Identities = 177/237 (75%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 3280 TCCTTTCATCGTCACCAGACGAAAGCCCCACGCTTCTACAACCTTCAATGCTTCAAGTGG 3339 ||| ||||| |||| ||| || || ||||| || || | ||||||| ||||| | || Sbjct 298 TCCCTTCATGGTCATCAGCCGGAACCCCCAGGCATCCATCACCTTCAGCGCTTCCATCGG 239 Query 3340 TTGTGTAGGCACCCACCACATAGACAACAGGCAATTATCGGCTGCCAGTTCCCATACCGG 3399 ||| || |||||||||||||||| || ||||||||| || | | || |||| |||||| Sbjct 238 TTGAGTTGGCACCCACCACATAGCCAGCAGGCAATTCTCTTCGGACAAATCCCTTACCGG 179 Query 3400 GAGGCGGCAGATATCCAGAAGACTCATGACCGGATATTTAAAACTTGCACCGCGTTGACC 3459 | ||||| |||||| | | |||| | |||||| | ||| ||||||| || Sbjct 178 CAAACGGCAAATATCCTGCACGGTCATCGTTTGGTATTTATGTCCTGCGCCGCGTTCGCC 119 Query 3460 ATCGGTTGCTTTGTCGCGGAATGTCCAGGGGGGATCTGCGTAAATGAGGGTGTATTT 3516 ||| | ||||| |||||| | ||||| || |||||||| ||||| ||||||||||| Sbjct 118 GTCGTTGGCTTTATCGCGGTACGTCCACGGTGGATCTGCATAAATCAGGGTGTATTT 62 >seq369136 Length=224 Score = 138 bits (152), Expect = 4e-28 Identities = 143/186 (77%), Gaps = 1/186 (1%) Strand=Plus/Plus Query 9744 TTATTAACCCCCCATTGTTCTCCAAATACAAAACCAATTTCCGCCAGTGCTTCGTCCATT 9803 ||||| ||| || |||| || |||||| | || || ||||| ||||| | | |||||| Sbjct 40 TTATTCACCGCC-ATTGGTCGCCAAATTCGAAGCCGATTTCAGCCAGAGATAAATCCATT 98 Query 9804 TTGTCGATGAACTCCGGCACCATCTCATCAAAACTCGCCATGTACTTTTCATCCCGCTCG 9863 || |||||||| ||||||||||| || || || | |||||| ||||| || ||||| Sbjct 99 TTTTCGATGAATTCCGGCACCATTTCTTCGAAGTCGGACATGTATTTTTCGTCACGCTCA 158 Query 9864 ACCACGACATAATGCAGGCCTTCACGCTTCATGCGTGGGTCGTAGTTGGCGAAGTACCAG 9923 || | | | ||| | ||||||||||||||||| ||||| ||||| ||||| |||||| Sbjct 159 ACGATTATGTGATGAATACCTTCACGCTTCATGCGAGGGTCATAGTTCGCGAAATACCAG 218 Query 9924 GCGTCC 9929 || ||| Sbjct 219 GCATCC 224 >seq147806 Length=6067 Score = 113 bits (124), Expect = 2e-20 Identities = 121/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 138 TCAGGCATCCATGCACCATAAACATTGTAGACCATGCTGGCGCTGGAGTGCCCCATCTGT 197 ||||||||||| || |||||||| |||| |||||| || ||| ||| ||||| || Sbjct 3802 TCAGGCATCCACGCCCCATAAACGTTGTGGACCATTTGAGCATTGGTGTGACCCATTTGA 3861 Query 198 GATGCAATAAATGTCGGGTTTGCTCCGGCAGATAAAGCCCAGCACGCATAGGTATGGCGT 257 | ||||||||| | ||||| ||||| |||| || | |||||||||||| || || || Sbjct 3862 GTTGCAATAAAGTTAGGGTTAGCTCCTGCAGCCAATGACCAGCACGCATATGTGTGTCGA 3921 Query 258 GACTGATACGCTTTACGGGATCGGATACCCGCTCTTTTTA 297 |||||||| ||||| | | | ||||| ||| ||||| Sbjct 3922 GACTGATATGCTTTCCTGTCTGTAATACCTGCTACTTTTA 3961 >seq189010 Length=996 Score = 109 bits (120), Expect = 2e-19 Identities = 68/73 (93%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 23592 GGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAAT 23651 ||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||| Sbjct 849 GGCCCTTTAGCTCAGTGGTCAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAAT 790 Query 23652 CCAGCAAGGGCCA 23664 ||||||||||||| Sbjct 789 CCAGCAAGGGCCA 777 >seq286911 Length=6367 Score = 102 bits (112), Expect = 3e-17 Identities = 70/79 (89%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 23592 GGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAAT 23651 ||||| ||||||||||||| ||||| ||||||||||||||| ||||||||||||||| Sbjct 5790 GGCCCCTTAGCTCAGTGGTTAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAAC 5731 Query 23652 CCAGCAAGGGCCACCATAT 23670 |||||| ||||||||| || Sbjct 5730 CCAGCAGGGGCCACCAAAT 5712 >seq462907 Length=336 Score = 98.7 bits (108), Expect = 4e-16 Identities = 82/98 (84%), Gaps = 3/98 (3%) Strand=Plus/Minus Query 23576 TTATTATCCTGCGCCC--GGCCCTTTAGCTCAGT-GGTGAGAGCGAGCGACTCATAATCG 23632 |||| |||||||||| ||||| ||||||||| ||| ||||| |||||||||||||| Sbjct 116 TTATAATCCTGCGCCTCAGGCCCCATAGCTCAGTTGGTTAGAGCACGCGACTCATAATCG 57 Query 23633 CCAGGTCGCTGGTTCAAATCCAGCAAGGGCCACCATAT 23670 | |||||||||||||| |||||| ||||||||| || Sbjct 56 CTTGGTCGCTGGTTCAAGTCCAGCTGGGGCCACCAGAT 19 >seq203346 Length=2488 Score = 86.0 bits (94), Expect = 2e-12 Identities = 81/98 (83%), Gaps = 4/98 (4%) Strand=Plus/Minus Query 30560 CAGAACCTTT-CAGGATGACCCTTGAGGATGCCGGTTTGGTGATCGGTGCCTTTCTGTGG 30618 |||||||||| ||||||| ||||||||| |||| | | || |||| || |||||| || Sbjct 1096 CAGAACCTTTTCAGGATGCACCTTGAGGAA-CCGGCTAGCTG-TCGGAGC-TTTCTGGGG 1040 Query 30619 GCCGGAATCCTGTGTGACAAGGTTCATCACTAAAAGGT 30656 |||| ||||||| |||| |||||||||||||||||| Sbjct 1039 GCCGTCTTCCTGTGCGACAGGGTTCATCACTAAAAGGT 1002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 193584737459312