Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_018855.1 Length=169158 Score E Sequences producing significant alignments: (Bits) Value seq79071 194 2e-44 seq222524 176 5e-39 seq1462 167 3e-36 seq65234 159 4e-34 seq209331 122 9e-23 seq213894 100 3e-16 seq260686 87.8 2e-12 >seq79071 Length=852 Score = 194 bits (214), Expect = 2e-44 Identities = 151/180 (84%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 43722 GGTGGTCAACACCTGAACGTTAACGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 43781 ||||| || || |||||||| |||||||||||||| ||||| ||||||||||||||||| Sbjct 360 GGTGGACAGCATCTGAACGTCAACGTTCTGCGTCGCGAAACGCTGGAAGATGCAGTTAAA 301 Query 43782 CATCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 43841 ||||| ||||| |||||||||||||| |||||||| || || ||||| || || |||||| Sbjct 300 CATCCTGAAAACTATCCGCAGCTGACTATCCGTGTTTCAGGCTATGCCGTGCGTTTTAAC 241 Query 43842 TCTCTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGGACATTTACCGAGAGTCTATAA 43901 || ||||| || || |||||||||||||| || | || || ||||| || ||||| ||| Sbjct 240 TCACTGACGCCTGAGCAGCAGCGCGACGTAATTACCCGTACCTTTACTGAAAGTCTTTAA 181 >seq222524 Length=8439 Score = 176 bits (194), Expect = 5e-39 Identities = 147/180 (82%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 43722 GGTGGTCAACACCTGAACGTTAACGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 43781 || ||||| || |||||||| ||||| ||| | |||||||| |||||||| || || ||| Sbjct 4204 GGCGGTCAGCATCTGAACGTCAACGTCCTGAGCCGTGAAACGCTGGAAGAGGCGGTGAAG 4145 Query 43782 CATCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 43841 || ||||| |||||||||||||||||||| || || ||||||||||| || || |||||| Sbjct 4144 CACCCGGAGAAATATCCGCAGCTGACCATTCGCGTTTCCGGTTATGCCGTGCGTTTTAAC 4085 Query 43842 TCTCTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGGACATTTACCGAGAGTCTATAA 43901 ||| |||| || ||||||||||| ||||| || | || || ||||| || || || ||| Sbjct 4084 TCTTTGACGCCAGAACAGCAGCGTGACGTGATTACGCGTACCTTTACTGAAAGCCTTTAA 4025 >seq1462 Length=4781 Score = 167 bits (184), Expect = 3e-36 Identities = 318/467 (68%), Gaps = 1/467 (0%) Strand=Plus/Plus Query 131908 TCGTTTTTATGATGCCGTTTCTACTCATCAAGTTTCATTGCCTACTCCAATTATGGCAGG 131967 ||| |||||||||||||| || || | || |||| || ||||| ||||| ||||| || Sbjct 999 TCGCTTTTATGATGCCGTGTCGACCTTTAAAATTTCCTTACCTACGCCAATCATGGCTGG 1058 Query 131968 TGCTCGTACTCCAACTCGCCAGTTCTCTAGTTGTGTAGTTATTGAAGCCGGTGATTCGTT 132027 | || || || |||||||| ||| || || |||| || || ||| || Sbjct 1059 GGTACGGACGCCGACTCGCCAATTCAGCTCATGCGTGCTTATCGAGTGTGGCGATAGCTT 1118 Query 132028 AAAATCTATTAACAAAACTTCAGCATCAATTATTGAATATATTTCTAAACGAGCTGGTAT 132087 | | ||||| ||| ||||| | || || |||| |||| |||| || || || Sbjct 1119 AGACTCTATCAACGCCACTTCTAGTGCTATCGTTAAATACGTTTCACAACGCGCAGGGAT 1178 Query 132088 AGGTATCAACGTTGGTATGCTTCGTGCAGAAGGTTCTAAGATCGGTATGGGTGAAGTTCG 132147 |||||||| | ||| ||||||| ||| ||| || ||||||| | Sbjct 1179 CGGTATCAATGCTGGCCGTATTCGTGCGCTAGGCAGCCCAATCCGTGGTGGTGAAGCTTT 1238 Query 132148 ACATACGGGTGTTATTCCATTCTGGAAACATTTCCAAACTGCAGTAAAATCTTGTTCTCA 132207 ||||| ||| ||| || |||| ||||| ||||| || || || |||||||| || || Sbjct 1239 CCATACCGGTTGTATCCCGTTCTACAAACACTTCCAGACGGCCGTGAAATCTTGCTCGCA 1298 Query 132208 AGGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTATCCGATGTGGCACTTAGAAGTAGA 132267 ||| || | || || ||||| || ||| || ||| || ||||||||||| ||| | || Sbjct 1299 AGGCGGCGTACGCGGGGGTGCCGCGACACTGTTTTACCCTATGTGGCACTTGGAAATTGA 1358 Query 132268 GAACCTATTAGTTCTGAAAAATAACAAAGGCGTGGATGAAAACCGTATTCGACATATGGA 132327 | | ||||||| |||||||||||| || || || | |||||| | || || | || Sbjct 1359 AAGCTTATTAGTCCTGAAAAATAACCGTGGTGTTGAAGGTAACCGTGTCCGTCACCTAGA 1418 Query 132328 CTACGGAATTCAAATTAATGACCTTATGATGGAACGCCTTGGTAAAA 132374 ||||| | ||||| || | || ||| |||| | |||||||| Sbjct 1419 TTACGGCGTACAAATCAACAAACTCATGTATCAACGTC-TGGTAAAA 1464 >seq65234 Length=1614 Score = 159 bits (176), Expect = 4e-34 Identities = 314/462 (68%), Gaps = 12/462 (3%) Strand=Plus/Minus Query 131891 CGTTTGAAACATATTATTCGTTTTTATGATGCCGTTTCTACTCATCAAGTTTCATTGCCT 131950 ||| |||| ||||| || |||||| |||| |||| ||| | || | || | || Sbjct 1113 CGTATGAATTATATTCAGCGCTTTTATAATGCAATTTCCACTTTTAAAATATCTCTACCC 1054 Query 131951 ACTCCAATTATGGCAGGTGCTCGTACTCCAACTCGCCAGTTCTCTAGTTGTGTAGTTATT 132010 || || |||||| |||| | | || |||||||| || || | |||||| | ||| Sbjct 1053 ACACCGATTATGTCAGGAGTAAGAACACCAACTCGTCAATTTAGTTCTTGTGTGTTAATT 994 Query 132011 GAAGCCGGTGATTCGTTAAAATCTATTAAC---AAAACTTCAGCATCAATTATTGAATAT 132067 ||| | ||| ||||| |||||||| | |||| ||| ||| | ||||| Sbjct 993 GAATGTGCAGATAATTTAAACTCTATTAATGCTACAACTAGTGCA---ATTGTAAAATAT 937 Query 132068 ATTTCTAAACGAGCTGGTATAGGTATCAACGTTGGTATGCTTCGTGC---AGAAGGTTCT 132124 ||||| ||||||| || ||||| || |||| |||| |||| || || | || || Sbjct 936 GTTTCTCAACGAGCAGGAATAGGCATTAACGCTGGTCAAATTCGAGCTTTAGGAAGTCCT 877 Query 132125 AAGATCGGTATGGGTGAAGTTCGACATACGGGTGTTATTCCATTCTGGAAACATTTCCAA 132184 | || | | || |||| ||||| || |||||| || | ||||| |||||| Sbjct 876 A---TCAGAAATGGAGAAGCATTTCATACCGGATGTATTCCTTTTTATAAACACTTCCAA 820 Query 132185 ACTGCAGTAAAATCTTGTTCTCAAGGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTAT 132244 | |||||||||||||||||||||||||| || | || || || || || | | ||| Sbjct 819 AGCGCAGTAAAATCTTGTTCTCAAGGTGGAGTTAGAGGAGGGGCCGCAACTGTTTTTTAC 760 Query 132245 CCGATGTGGCACTTAGAAGTAGAGAACCTATTAGTTCTGAAAAATAACAAAGGCGTGGAT 132304 || || ||||| ||||| | || || |||||||| | |||||||| | ||| | || Sbjct 759 CCAATATGGCATCTAGAAATTGAAAATTTATTAGTTTTAAAAAATAATAGAGGAATTGAA 700 Query 132305 GAAAACCGTATTCGACATATGGACTACGGAATTCAAATTAAT 132346 ||||| | | || ||| | || || | | ||||||||| Sbjct 699 GAAAATAGAGTACGTCATCTTGATTATGCTGTACAAATTAAT 658 >seq209331 Length=9407 Score = 122 bits (134), Expect = 9e-23 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 43722 GGTGGTCAACACCTGAACGTTAACGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 43781 || ||||| ||||| |||||||||||| || ||||||| ||| || || | | Sbjct 482 GGCGGTCAGCACCTCAACGTTAACGTTATGAACCGTGAAATGCTGCTGGACGCGATGGAA 423 Query 43782 CATCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 43841 ||||| || |||||||||||||||||||| || || |||||||| || || ||||||||| Sbjct 422 CATCCAGAGAAATATCCGCAGCTGACCATTCGCGTTTCCGGTTACGCGGTCCGCTTTAAC 363 Query 43842 TCTCTGACTCCGGAACAGCAGC 43863 || |||||| |||||||||| Sbjct 362 TCACTGACTAAAGAACAGCAGC 341 >seq213894 Length=28734 Score = 100 bits (110), Expect = 3e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 43722 GGTGGTCAACACCTGAACGTTAACGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 43781 || ||||| ||||| ||||| ||||| || ||||||| ||| || || | | Sbjct 8810 GGGGGTCAGCACCTCAACGTCAACGTGATGAACCGTGAAATGCTGCTGGAAGCGATGGAA 8869 Query 43782 CATCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 43841 | |||||||||||||||||| | ||||| || || || || ||||| || ||||| ||| Sbjct 8870 GACCCGGAAAAATATCCGCAGTTAACCATTCGCGTGTCGGGCTATGCGGTACGCTTCAAC 8929 Query 43842 TCTCTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGGACATTTACCGAGAG 43894 || |||||| |||||||||| || || ||| | || || || || |||| Sbjct 8930 TCGCTGACTAAAGAACAGCAGCAGGATGTGATCACCCGTACCTTCACTCAGAG 8982 >seq260686 Length=13603 Score = 87.8 bits (96), Expect = 2e-12 Identities = 282/429 (66%), Gaps = 8/429 (2%) Strand=Plus/Plus Query 131909 CGTTTTTATGATGCCGTTTCTACTCATCAAG-TTTCATTGCCTACTCCAATTATGGCAGG 131967 ||||| || ||||| | || || | | ||| |||| |||| || ||||||||| | || Sbjct 5148 CGTTTCTACGATGCGATCTCCAC-CTTTAAGATTTCGCTGCCGACGCCAATTATGTCCGG 5206 Query 131968 TGCTCGTACTCCAACTCGCCAGTTCTCTAGTTGTGTAGTTATTGAAGCCGGTGATTCGTT 132027 | || || || || ||||||||| || ||| | ||||| ||| || | Sbjct 5207 CGTGCGCACCCCGACGCGCCAGTTCAGCTCCTGCGTACTGATTGAGTGCGGCGACAGCCT 5266 Query 132028 AAAATCTATTAACAAAACTTC-AGCATCAATTATTGAATATATTTCTAAACGAGCTGGTA 132086 | || |||||| || || ||| | ||| | | || ||||| | || || |||| Sbjct 5267 TGATTCCATTAACGCCACCTCCAGCG-CGATTGTGAAGTACGTTTCTCAGCGTGCCGGTA 5325 Query 132087 TAGGTATCAACGTTGGTATGCTTCGTGCAGAAGGTTCTAAGATCGGTATGGGTGAAG--T 132144 | || || |||| ||| | ||||| || |||| | ||||||| | Sbjct 5326 TCGGCATTAACGCCGGTCGCATCCGTGCGCTGGGCAGCCCGATCCGCGGCGGTGAAGCAT 5385 Query 132145 TCGACATACGGGTGTTATTCCATTCTGGAAACATTTCCAAACTGCAGTAAAATCTTGTTC 132204 || ||| ||| || ||||| |||| || || ||||| || || || || || || || Sbjct 5386 TCCACAC-CGGCTGC-ATTCCGTTCTATAAGCACTTCCAGACCGCGGTGAAGTCCTGCTC 5443 Query 132205 TCAAGGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTATCCGATGTGGCACTTAGAAGT 132264 ||| || || | || || ||||| || || || || || |||||||| | ||||| Sbjct 5444 TCAGGGCGGCGTGCGCGGCGGTGCAGCGACCCTGTTCTACCCAATGTGGCATCTGGAAGT 5503 Query 132265 AGAGAACCTATTAGTTCTGAAAAATAACAAAGGCGTGGATGAAAACCGTATTCGACATAT 132324 || | ||| | || ||||| || ||| ||||| || | ||||| | || ||||| Sbjct 5504 GGAAAGCCTGCTGGTGCTGAAGAACAACCGCGGCGTTGAAGGCAACCGCGTGCGTCATAT 5563 Query 132325 GGACTACGG 132333 ||||||||| Sbjct 5564 GGACTACGG 5572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537800509716880