Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq1462 145 2e-29 seq208036 127 5e-24 seq65234 111 4e-19 seq285532 105 2e-17 seq171266 105 2e-17 seq1414 100 6e-16 seq129507 98.7 2e-15 seq218519 96.9 8e-15 seq32643 89.7 1e-12 seq28758 86.0 1e-11 >seq1462 Length=4781 Score = 145 bits (160), Expect = 2e-29 Identities = 421/638 (66%), Gaps = 10/638 (2%) Strand=Plus/Plus Query 224383 CCAACTCCAATTATGGCTGGACTACGTACTAACACTCGCCAATTTAGTTCTTGCGTAGTT 224442 || || ||||| |||||||| |||| || ||||||||||| || || ||||| || Sbjct 1039 CCTACGCCAATCATGGCTGGGGTACGGACGCCGACTCGCCAATTCAGCTCATGCGTGCTT 1098 Query 224443 ATGAACGTTGGTGATAGTCTAGACAGCATTAGTGCTGGTAACAGTGCTATAATGCAGTAT 224502 || | ||| ||||| ||||| || | || | |||||||| | | || Sbjct 1099 ATCGAGTGTGGCGATAGCTTAGACTCTATCAACGCCACTTCTAGTGCTATCGTTAAATAC 1158 Query 224503 ATTTCTAAGAAAGCCGGTTTGGGAGTCAACTATGGTCGTGTCCGTGCAGTTGGTTCAGA- 224561 |||| | || || | || |||| ||| ||| | ||||| | || ||| Sbjct 1159 GTTTCACAACGCGCAGGGATCGGTATCAATGCTGGCCGTATTCGTGCGCTAGG--CAGCC 1216 Query 224562 -AATTCGTGGTGGTGATGCTGTTCATACTGGATTGATTCCATTCCTACACGCAGTTGC-T 224619 ||| ||||||||||| ||| | ||||| || ||| ||| | ||||| || || | Sbjct 1217 CAATCCGTGGTGGTGAAGCTTTCCATACCGG-TTGTATCCCGTTCTACAAACACTTCCAG 1275 Query 224620 AAAACTGTTAAATCTTGTTCTCAAGGTGGTGTGCGTGGTGGTGCAGCAACAGTCCACTTC 224679 | | || |||||||| || ||||| || || || || ||||| || ||| | | | Sbjct 1276 ACGGCCGTGAAATCTTGCTCGCAAGGCGGCGTACGCGGGGGTGCCGCGACACTGTTTTAC 1335 Query 224680 CCATTGTGGCATTACGAGTTTGAAGATCTT-GTAGTACTAAAGAATAACAAAGGTACAGA 224738 || ||||||| | || ||||| | ||| |||| || || |||||| ||| || Sbjct 1336 CCTATGTGGCACTTGGAAATTGAA-AGCTTATTAGTCCTGAAAAATAACCGTGGTGTTGA 1394 Query 224739 A-GTATCTCGTGTTCGTCAGTTGGATTATTGTTTCCAAATTAATAAAACTTTCTATCAAC 224797 | ||| | ||||| ||||| | ||||| | | ||||| || ||| | ||||||| Sbjct 1395 AGGTAAC-CGTGTCCGTCACCTAGATTACGGCGTACAAATCAACAAACTCATGTATCAAC 1453 Query 224798 GCTTGATTGAACGTAAAGATATTACTTTCTTCTCTCCAAGTGATGTTCCTGGTTTGTATG 224857 | || | || | ||||| | | ||| |||| ||||| || || | || | Sbjct 1454 GTCTGGTAAAAGGCGGCGATATCTCGCTATTCAGTCCATCGGATGTGCCAGGGCTATACG 1513 Query 224858 ATGCATTCTGTGCAGACCAAGAAAAATTTGAAAAGCTATACACTAAGTATGAAGCTGATC 224917 |||| |||| || ||||||| | | |||||| || |||||| |||| ||||| ||| Sbjct 1514 ATGCCTTCTTCGCTGACCAAGCAGAGTTTGAACGTCTTTACACTCAGTACGAAGCGGATG 1573 Query 224918 CAAATATTCGTAAGAAAACTATGCCAGCACTAGAAGTGTTCTCTCAACTAATGAATGAAC 224977 |||||||||| ||| || ||| | || |||| | | | | ||| | |||| Sbjct 1574 ATTCTATTCGTAAGCAAAAAATTAAAGCCGTTGATCTGTTTGCCCTAATGATGCAAGAAC 1633 Query 224978 GTTCTGAAACTGGACGTATCTATATCCAGAATATTGAC 225015 || || ||||| ||||| |||||||| || ||||| Sbjct 1634 GTGCTTCGACTGGCCGTATTTATATCCAAAACGTTGAC 1671 >seq208036 Length=2698 Score = 127 bits (140), Expect = 5e-24 Identities = 279/413 (68%), Gaps = 10/413 (2%) Strand=Plus/Plus Query 150380 ACCAAAAAGAATGGTGCGTTAGTTGGTGAACCAGGTGTTGGTAAAACACAAATCGTTGAC 150439 |||||||| ||| | ||| | ||||| || || || |||||||| |||||||| Sbjct 798 ACCAAAAATAATCCAGTATTAATCGGTGAGCCTGGAGTGGGTAAAACCGCCATCGTTGAA 857 Query 150440 GGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATTCTATGAAAGATGTTGAAAT- 150498 || ||||| ||||| ||| ||| ||||| |||||||| | || | || | | Sbjct 858 GGCTTAGCGCAACGTATCATTAACGGTGAAGTTCCAGAAGGCCTTAAGG--GTCGCCGTG 915 Query 150499 TCTTT-CTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTATCGTGGTGAATTCGAAG 150557 |||| |||| ||||||| || | || ||| | |||| ||| || ||||| |||| Sbjct 916 TCTTAGCTTTAGATATGGGAGCGCTGGTGGCCGGTGCCAAGTTTCGAGGCGAATTTGAAG 975 Query 150558 AACGTGTAGACAATTTGCTACAAGAACTAAAAGAACGCGATG---ATGTTATTCTGTTCA 150614 | ||| || | | || | || || ||| |||| |||| ||||| || | Sbjct 976 AGCGTTTAAAAGCGGTTCTGAATGACCTGTCGAAACAGGATGGTAATGTCATTCTCTTTA 1035 Query 150615 TCGATGAAATCCATACTATTATGGGTGCTGGTGCGACTGGCGGCGGTTCTTTGGATATGA 150674 |||||||||| || || || | || || ||| | | |||| | ||||| Sbjct 1036 TCGATGAAATTCACACCATGGTTGGAGCAGGTAAAGCCGATGGCG---CGATGGATGCCG 1092 Query 150675 GCAATATGTTAAAACCTGCTCTATCTCGCGGTGAAATTCGTGTCATCGGTGCAACAACCT 150734 | |||||| | || |||||| || | || ||||| | | | | || |||||||||| Sbjct 1093 GAAATATGCTTAAGCCTGCTTTAGCACGTGGTGAGCTGCACTGCGTGGGCGCAACAACCT 1152 Query 150735 ACGATGAATATCGTAAACACATTGAAAAAGATGCAGCACTACAGCGTCGTTTC 150787 |||||||||||| || | || ||||| |||||||| || ||||||||||| Sbjct 1153 TAGATGAATATCGTCAATATATAGAAAAGGATGCAGCGCTTGAGCGTCGTTTC 1205 >seq65234 Length=1614 Score = 111 bits (122), Expect = 4e-19 Identities = 412/641 (64%), Gaps = 20/641 (3%) Strand=Plus/Minus Query 224379 TCTTCCAACTCCAATTATGGCTGGACTACGTACTAACACTCGCCAATTTAGTTCTTGCGT 224438 ||| || || || |||||| | ||| || | || ||||| |||||||||||||| || Sbjct 1060 TCTACCCACACCGATTATGTCAGGAGTAAGAACACCAACTCGTCAATTTAGTTCTTGTGT 1001 Query 224439 AGTTA--TGAACGTTGGTGATAGTCTAGACAGCATTAGTGCTGGTAACAGTGCTATAATG 224496 |||| |||| || | |||| | || || |||| |||| | ||||| || | Sbjct 1000 -GTTAATTGAATGT-GCAGATAATTTAAACTCTATTAATGCTACAACTAGTGCAATTGTA 943 Query 224497 CAGTATATTTCTAAGAAAGCCGGTTTGGGAGTCAACTATGGTCGTGTCCGTGCAGTTGGT 224556 | ||| ||||| | ||| || | || | ||| ||||| | || || | || Sbjct 942 AAATATGTTTCTCAACGAGCAGGAATAGGCATTAACGCTGGTCAAATTCGAGCTTTAGGA 883 Query 224557 -------TCAGAAATTCGTGGTGGTGATGCTGTTCATACTGGATTGATTCCATTCCTACA 224609 |||||||| || || || ||||||| |||| ||||| || || | Sbjct 882 AGTCCTATCAGAAAT-------GGAGAAGCATTTCATACCGGATGTATTCCTTTT-TATA 831 Query 224610 CGCAGTTGCTAAAA-CTGTTAAATCTTGTTCTCAAGGTGGTGTGCGTGGTGGTGCAGCAA 224668 || || | || | || |||||||||||||||||||| || | || || || |||| Sbjct 830 AACACTTCCAAAGCGCAGTAAAATCTTGTTCTCAAGGTGGAGTTAGAGGAGGGGCCGCAA 771 Query 224669 CAGTCCACTTCCCATTGTGGCATTACGAGTTTGAAGATCTTGTAGTACTAAAGAATAACA 224728 | || | |||| | |||||| || ||||| || | |||| |||| ||||| | Sbjct 770 CTGTTTTTTACCCAATATGGCATCTAGAAATTGAAAATTTATTAGTTTTAAAAAATAATA 711 Query 224729 AAGGTACAGAAGTATCTCGTGTTCGTCAGTTGGATTATTGTTTCCAAATTAATAAAACTT 224788 ||| | |||| | | | || ||||| | |||||| | | |||||||||||| Sbjct 710 GAGGAATTGAAGAAAATAGAGTACGTCATCTTGATTATGCTGTACAAATTAATAAATTAA 651 Query 224789 TCTATCAACGCTTGATTGAACGTAAAGATATTACTTTCTTCTCTCCAAGTGATGTTCCTG 224848 | |||||| | || | | | ||| | ||||| || || ||| ||| |||||| Sbjct 650 TGTATCAAAGAATGCTACTAGGAAAAAAAATTACATTATTTAGTCCTTCTGACGTTCCTA 591 Query 224849 GTTTGTATGATGCATTCTGTGCAGACCAAGAAAAATTTGAAAAGCTATACACTAAGTATG 224908 || ||| | || | | || ||| |||||||| | | | || | ||| |||| Sbjct 590 ACTTATATAAATTTTTTTTCTCCGATCAAAAAAAATTTAAGGAAATTTATATTAAATATG 531 Query 224909 AAGCTGATCCAAATATTCGTAAGAAAACTATGCCAGCACTAGAAGTGTTCTCTCAACTAA 224968 || || ||||| | || |||| ||| ||| | || |||||| | | | | Sbjct 530 AAAAAAATAGCAATATAAGAAAAAAAAGTATTAATGCAATTGATTTGTTCTGTTTAATTA 471 Query 224969 TGAATGAACGTTCTGAAACTGGACGTATCTATATCCAGAAT 225009 || ||| | | |||||||||||||||||| || ||| Sbjct 470 TGCGAGAAAGAGCATCAACTGGACGTATCTATATACAAAAT 430 >seq285532 Length=397 Score = 105 bits (116), Expect = 2e-17 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 324513 ATGGGGCTATAGCTCAGTTGGGAGAGCGTCTGCCTTGCACGTAGAAGGTCAACGGTTCGA 324572 ||||||||||||||||| |||||||||| |||||||||||| || |||||| |||||||| Sbjct 276 ATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGTCAGCGGTTCGA 335 Query 324573 ACCCGTTTAGCTCCAC 324588 |||| |||||||||| Sbjct 336 TCCCGCTTAGCTCCAC 351 >seq171266 Length=457 Score = 105 bits (116), Expect = 2e-17 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 324511 ATATGGGGCTATAGCTCAGTTGGGAGAGCGTCTGCCTTGCACGTAGAAGGTCAACGGTTC 324570 ||| ||||| ||||||||| |||||||||| |||||||||||| || ||||||||||||| Sbjct 336 ATACGGGGCCATAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGTCAACGGTTC 277 Query 324571 GAACCCGTTTAGCTCCAC 324588 || ||||||| ||||||| Sbjct 276 GATCCCGTTTGGCTCCAC 259 >seq1414 Length=2481 Score = 100 bits (110), Expect = 6e-16 Identities = 191/277 (69%), Gaps = 12/277 (4%) Strand=Plus/Minus Query 133914 ATCCTGATTCTCGACGTCATATTC-TAACTGCATGGAATGTTGGTGAACTAGATAAAATG 133972 ||||||||||||| | ||||| || || | ||||||||||| ||| | ||||||||| Sbjct 1763 ATCCTGATTCTCGTAGA-ATATTAGTATCTTCTTGGAATGTTGGAGAAATTGATAAAATG 1705 Query 133973 ACTTTGCCACCATGTCATTGCTTTAGTCAATTCT---TCGTAAATGACG--GTAAGTTAT 134027 |||| | ||||||||| || |||||| | | |||| || | |||||| | Sbjct 1704 TCTTTAGCTCCATGTCATATATTATTTCAATTTTATGTATTAAAAGAAGAATTAAGTTGT 1645 Query 134028 CATGTATTCTATATCAACGTAGCTGTGATCTATTCTTAGGAGTACCATTCAACATTGCTT 134087 || || || |||||| || ||| |||| | || |||| || || || ||| Sbjct 1644 CA-----ACTTTACCAACGTTCTTGCGATGTATTTCTTGGTTTACCCTTTAATATAGCTA 1590 Query 134088 CATATTCATTACTAACTCATATGTTAGCACAAGTTTGTGGGTTAGAAGTTGGTGAGTTTG 134147 ||| || |||| | |||||| |||| ||| || | ||||||| || ||| Sbjct 1589 GCTATGCAATACTTATACATATGATAGCTCAACAATGCAAACTCCAAGTTGGAGAATTTT 1530 Query 134148 TATGGATGGGTGGAGATGTTCACATTTATAAAAATCA 134184 | |||| || ||||||||||| | ||||||||||| Sbjct 1529 TGTGGACAGGAGGAGATGTTCATTTATATAAAAATCA 1493 >seq129507 Length=2248 Score = 98.7 bits (108), Expect = 2e-15 Identities = 72/84 (86%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 324505 AGAAGTATATGGGGCTATAGCTCAGTTGGGAGAGCGTCTGCCTTGCACGTAGAAGGTCAA 324564 ||||| || ||||| ||||||||| |||||||||| |||||||||||| || |||||| Sbjct 2037 AGAAGATTACGGGGCCATAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGTCAG 2096 Query 324565 CGGTTCGAACCCGTTTAGCTCCAC 324588 |||||||| |||| || ||||||| Sbjct 2097 CGGTTCGATCCCGCTTGGCTCCAC 2120 >seq218519 Length=858 Score = 96.9 bits (106), Expect = 8e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 324515 GGGGCTATAGCTCAGTTGGGAGAGCGTCTGCCTTGCACGTAGAAGGTCAACGGTTCGAAC 324574 ||||||||||||||| |||||||||| |||||||||||| || |||||| |||||| | | Sbjct 842 GGGGCTATAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGTCAGCGGTTCAATC 783 Query 324575 CCGTTTAGCTCCA 324587 ||| ||||||||| Sbjct 782 CCGCTTAGCTCCA 770 >seq32643 Length=3261 Score = 89.7 bits (98), Expect = 1e-12 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 324515 GGGGCTATAGCTCAGTTGGGAGAGCGTCTGCCTTGCACGTAGAAGGTCAACGGTTCGAAC 324574 ||||||||||||||| |||||||||| |||| | ||| | || |||||| |||||||| | Sbjct 962 GGGGCTATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGTCAGCGGTTCGATC 1021 Query 324575 CCGTTTAGCTCCACAAA 324591 ||| |||||||||| || Sbjct 1022 CCGCTTAGCTCCACCAA 1038 >seq28758 Length=2429 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/91 (81%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 284184 ATGGGGATGTGGTGAAATTGGCAGACACGCCAGATTTAGGTTCTGGTTCTTC--GGAGTG 284241 ||| ||| |||| |||||||| |||| | ||||||||||||||||| | | || ||| Sbjct 2210 ATGCGGAAGTGGCGAAATTGGTAGACGCACCAGATTTAGGTTCTGGCGCCGCAAGGTGTG 2269 Query 284242 CGAGTTCGAGTCTCGCCATCCCCACCATATT 284272 ||||||| ||||||||| ||| |||||| || Sbjct 2270 CGAGTTCAAGTCTCGCCTTCCGCACCATTTT 2300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1140250103028058