Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_019445.1 Length=44784 Score E Sequences producing significant alignments: (Bits) Value seq449472 179 1e-40 seq194023 165 2e-36 seq37562 116 1e-21 seq201909 102 2e-17 seq366053 80.6 8e-11 seq255299 80.6 8e-11 seq102074 80.6 8e-11 >seq449472 Length=298 Score = 179 bits (198), Expect = 1e-40 Identities = 182/237 (77%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 2042 TCCCTTCATGGTCATCAGACGGAATCCCCAGGCTTCAACAACTTTTAGTGCTTCGAGTGG 2101 |||||||||||||||||| ||||| |||||||| || | || || || ||||| | || Sbjct 298 TCCCTTCATGGTCATCAGCCGGAACCCCCAGGCATCCATCACCTTCAGCGCTTCCATCGG 239 Query 2102 TTGTGTTGGCACCCACCACATGGCCAACAGACAGTTTTCATCGGCCAAATCCCACACAGG 2161 ||| ||||||||||||||||| |||| ||| || || || |||| |||||||| || || Sbjct 238 TTGAGTTGGCACCCACCACATAGCCAGCAGGCAATTCTCTTCGGACAAATCCCTTACCGG 179 Query 2162 AAGGCGGCAGATATCCAGCACACTCATAACTGGATATTTAAAACCGGCACCGCGATTACC 2221 | ||||| |||||| |||| |||| | | |||||| || || ||||| | || Sbjct 178 CAAACGGCAAATATCCTGCACGGTCATCGTTTGGTATTTATGTCCTGCGCCGCGTTCGCC 119 Query 2222 ATCTGCGGCTTTGTCCCGGTATGCCCAGGGTGGATCTGCATAGATTAGTGTGTATTT 2278 || |||||| || ||||| | ||| |||||||||||||| || || |||||||| Sbjct 118 GTCGTTGGCTTTATCGCGGTACGTCCACGGTGGATCTGCATAAATCAGGGTGTATTT 62 >seq194023 Length=5833 Score = 165 bits (182), Expect = 2e-36 Identities = 244/341 (72%), Gaps = 6/341 (2%) Strand=Plus/Minus Query 7638 GAGAATGGGATCACTACAATGGAACAGGTTAACGCTGGTATGCGCCACGCCCGCGCCAGT 7697 ||||| || |||| ||| || ||| || || || | ||||| ||||||||||| Sbjct 341 GAGAACGGAATCAAAACACGCGAGCAGCTTTCGGCAGGCGTTCGCCAGGCCCGCGCCAGC 282 Query 7698 GAATCTCCG--TTCTGGCCGTCGCCTGGGCAATTTATCAAGTGGTGCAAAGACAGCAAGA 7755 | ||| | ||||||||||| || || | || ||| ||||||||||||||| | Sbjct 281 --AGCTCAGATTTCTGGCCGTCACCCGGTAAGTTCATCGCCTGGTGCAAAGACAGCTCGG 224 Query 7756 TGGTTCTTGGTGTCACCATTGACGATGTGATGGCGGAGTTTCACCGGTACAGCAAGGAAA 7815 |||| ||||| |||||| || | || || ||||| ||||||||||| |||| | ||| | Sbjct 223 TGGTGCTTGGGGTCACCCTTCAGGACGTCATGGCAGAGTTTCACCGATACAACCGGGAGA 164 Query 7816 AAAGTTTATATCCTGGCGGTCCCGAAAGATTCCCGTGG-CGGCATCCGGTTATGTACTGG 7874 | | | | | ||||| | || | ||||| ||| |||| ||||| ||||||||| Sbjct 163 AGGGCATGCACACGGGCGGCGCTGAGCGGTTCCCCTGGTCGGCC-CCGGTGATGTACTGG 105 Query 7875 GTTGTATGTGATACCCGCCGCGCAATGTATCAGCGCCAGCTTAGCGAGATTGAGGTTGAG 7934 ||||| || || ||||| || || ||||| ||||| ||| | |||||| |||||| ||| Sbjct 104 GTTGTCTGCGACACCCGGCGGGCGATGTACCAGCGTCAGATGAGCGAGGCTGAGGTGGAG 45 Query 7935 AAACACGCGCGCAGGTTGCTCGATGATTGGGCGAAAAAGGT 7975 || ||| || | || ||||| ||| |||| || || Sbjct 44 AAGTTCGCCGCCAAGAAACTGGATGAATGGTCGAAGAAAGT 4 >seq37562 Length=17931 Score = 116 bits (128), Expect = 1e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 11165 ATGGCTAAATCAGCAGCAGAGCGCAAAGCCGCTCAGAGAGCCAGACAAGCTGCATCTGGT 11224 |||||||| ||||||||||| ||||||||||| ||| | || | || ||||| ||| Sbjct 3121 ATGGCTAAGTCAGCAGCAGAACGCAAAGCCGCGCAGCGCGCACGGCAGGCTGCCAGCGGT 3062 Query 11225 GTGCGTAAGATGGAGATTGTGCTTGATGCTCAGGAAATTGAAATGCTAGAGCGTAACTGT 11284 | || || ||||| | ||| | |||||||||||| | |||||||| ||||||||| | Sbjct 3061 GAGCAGAAACTGGAGCTGGTGTTAGATGCTCAGGAACTCGAAATGCTGGAGCGTAACCGG 3002 Query 11285 GCCACGCGTCGCCCCGGGCGTGCGCCTTACGAATTTGGTGAGTATATAGCGTCACTGATC 11344 | | | || || || || | | ||||||| | | |||||||| || || || Sbjct 3001 GTCGCCCGCCGTCCAGGCAGAGACTCTTACGAGCTGGCCGAGTATATCGCCCTTCTCATT 2942 Query 11345 CGCCAGGATGATGC 11358 || ||||||||||| Sbjct 2941 CGTCAGGATGATGC 2928 >seq201909 Length=21394 Score = 102 bits (112), Expect = 2e-17 Identities = 167/238 (70%), Gaps = 17/238 (7%) Strand=Plus/Minus Query 11867 TGCTGATTACGTTCTCATGCGCCTGGTGGAGATCGACCAGATGGACGTGATCGACATCCT 11926 ||||| ||| || || |||||||||||||| ||| ||||||||||| |||||||||| Sbjct 2568 TGCTGCTTATGTGCTTCGCCGCCTGGTGGAGATTGACAAGATGGACGTGCTCGACATCCT 2509 Query 11927 CAACGACGATGG-GAGCCTTAAGCCAATCCGCGAGTGGCCGAAAATCTGGCGCACTACGC 11985 | | |||| ||| || |||||||| || |||||||||| ||||| || || | Sbjct 2508 GCTTGCCAATGGCGAG-CTGAAGCCAATTAAAGACTGGCCGAAAACATGGCGAACCACTC 2450 Query 11986 TTAGCGGCTTTGATCTGTCATCGACCATCATGAACATGAACGAGGATTCGATAGAGACAA 12045 | ||| | || ||| | || | ||| || ||| | || | Sbjct 2449 TGTCCGGTATGGA--TGTAACCG----------AGATGGCCGGTGATGC---AGCGGGGC 2405 Query 12046 TCCTCaaaaaaaTTAAATGGCCTGACAAGGTGAAGAACCTCGAACTGATTGGTAAGCA 12103 | || || ||||| |||||||| ||||||||||||||||| || ||| |||||||||| Sbjct 2404 TGCTGAAGAAAATCAAATGGCCGGACAAGGTGAAGAACCTTGAGCTGCTTGGTAAGCA 2347 >seq366053 Length=223 Score = 80.6 bits (88), Expect = 8e-11 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 14432 CAGGATTCGAACCTGCGACCAACCGCTTAGAAGGCGGTTGCTCTGTCCAACTGAGCTAA 14490 ||||||||||||||| |||| || ||||||||||| | |||||| |||||||||||||| Sbjct 211 CAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGGTGCTCTATCCAACTGAGCTAA 153 >seq255299 Length=12406 Score = 80.6 bits (88), Expect = 8e-11 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 14432 CAGGATTCGAACCTGCGACCAACCGCTTAGAAGGCGGTTGCTCTGTCCAACTGAGCTAA 14490 ||||||||||||||| |||| || ||||||||||| | |||||| |||||||||||||| Sbjct 3306 CAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGGTGCTCTATCCAACTGAGCTAA 3364 >seq102074 Length=1593 Score = 80.6 bits (88), Expect = 8e-11 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 14432 CAGGATTCGAACCTGCGACCAACCGCTTAGAAGGCGGTTGCTCTGTCCAACTGAGCTAA 14490 ||||||||||||||| |||| || ||||||||||| |||||||| |||| ||||||||| Sbjct 1128 CAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTATCCAGCTGAGCTAA 1070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 142338350571092