Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq121512 208 1e-48 seq416309 98.7 2e-15 >seq121512 Length=219671 Score = 208 bits (230), Expect = 1e-48 Identities = 516/774 (67%), Gaps = 30/774 (4%) Strand=Plus/Minus Query 25559 ACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCT 25618 ||||||| |||| ||||||| || || || ||||| | || ||||| || |||| Sbjct 213340 ACGCTCT--CCAACGACGAGCGCCACTTCATCTCCCACGTGCTCGCCTTCTTCGCCGCCT 213283 Query 25619 CTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAGTACGTGG 25678 | || || || ||| |||||| || | || |||| || |||||| || | Sbjct 213282 CGGACGGCATCGTGCTCGAGAACCTCGCCTCCAGGTTCATGTCCGACGTGCAGGTCGCCG 213223 Query 25679 AGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATG 25738 |||||| | |||||||| |||||||| |||||||| || | ||||| ||| |||| Sbjct 213222 AGGCCAGGGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCCGAGATGTACT 213163 Query 25739 CCAAGCTTCTGATGACGTACATTACAGACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCA 25798 || ||| | ||| ||||| |||| || ||||| || || || || | |||| Sbjct 213162 CCCTGCTCATCGAGACCTACATCCGCGACGACGTCGAGAAGGACCGCCTCTTCCGCGCCA 213103 Query 25799 TCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCC 25858 |||| ||| ||| | | | ||||| ||||| | |||||| || || Sbjct 213102 TCGACACCATCCCCGCCGTGCGCCGCAAGGCCGACTGGGCGCTCCGCTGGATCGACGGCG 213043 Query 25859 AG-AGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGC-TGCTGTGGAGGGCATCTTTTT 25916 | |||||| || ||||| | || ||||| || ||| || ||||||||||| || Sbjct 213042 GGGAGCGCTTCGCG----GAGCGCATCGTCGCCTTCGCCTGC-GTCGAGGGCATCTTCTT 212988 Query 25917 CAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGT 25975 | || || || |||| ||||||||||||||||| || ||| |||||| || || Sbjct 212987 CTCGGGCTCCTTCTGCG-CCATCTTCTGGCTCAAGAAGCGCGGGCTCATGCCGGGCCTCA 212929 Query 25976 ACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGC 26035 ||| ||||||||||||||| | | |||||||| || ||| | || || |||||||| | Sbjct 212928 CCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCCTCC 212869 Query 26036 TCTACACGGGCCACTTGCTCCAC--AAACCTTCTCAAGAGAC-CGTCTACAGTATCATCA 26092 |||| | || | |||| | || || | || | ||||| | ||| | Sbjct 212868 TCTA------CGACATCCTCCGCGGCAAGCTGGACGAGTCCCGCGTCTTCGAGATCGTGT 212815 Query 26093 AAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGG 26152 ||||| ||||| ||||||| |||||| | | Sbjct 212814 CCGAGGCCGTGGACATCGAGAGGGAGTTCGTCTGCGACGCGCTCCCCTGCGCGCTCGTCG 212755 Query 26153 GCATGAACAACAGACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCT-GTGC 26211 |||||||| | ||||||||||| ||||| |||| || ||||||| ||||| || Sbjct 212754 GCATGAACGGCGACCTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCATGG 212695 Query 26212 CAGCTGGGACTCGCCAGA--CTCTACAGTACGC--CTAACCCGTTCGACTTTATGGAAAA 26267 | |||||| || || ||| || |||| |||| | ||||||||||||| ||||| Sbjct 212694 C-GCTGGG-CT-GCAAGAAGCTGTACA--ACGCCACCAACCCGTTCGACTGGATGGAGCT 212640 Query 26268 CATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 ||| ||| || | || |||||||||||||| || ||| | |||||||| || || Sbjct 212639 CATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGTACCA 212586 >seq416309 Length=254 Score = 98.7 bits (108), Expect = 2e-15 Identities = 128/176 (73%), Gaps = 12/176 (7%) Strand=Plus/Minus Query 26152 GGCATGAACAACAGACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGC 26211 ||||||||| || |||||| |||| |||||||||| || ||||||| |||||| Sbjct 179 GGCATGAACGCCAACCTCATGTGCCAGTACATTGAGTTCGTCGCCGACCGTCTGCTC--- 123 Query 26212 CAGCTGGGACTCGCCA----GAC--TCTACAGTACGCCTAACCCGTTCGACTTTATGGAA 26265 || | ||||| || || |||||| | | | ||||| |||||||| ||||| Sbjct 122 ---CTCGCACTCGGCAACAAGAAGTTCTACAATGCCACCAACCCCTTCGACTTCATGGAG 66 Query 26266 AACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 ||||| || | | || |||||||||||||| || ||| | |||||||| || || Sbjct 65 AACATCTCCCTCGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGCGAGTACCA 10 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923048564626240