Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_019500.1 Length=168066 Score E Sequences producing significant alignments: (Bits) Value seq65234 156 5e-33 seq260686 107 2e-18 seq93888 86.0 7e-12 >seq65234 Length=1614 Score = 156 bits (172), Expect = 5e-33 Identities = 248/353 (70%), Gaps = 2/353 (1%) Strand=Plus/Minus Query 94853 TACCAACTCCTATTATGGCTGGAGCACGTACACCAACCCGTCAATTTAGTTCTTGTGTGG 94912 |||| || || |||||| | |||| | | |||||||| ||||||||||||||||||||| Sbjct 1058 TACCCACACCGATTATGTCAGGAGTAAGAACACCAACTCGTCAATTTAGTTCTTGTGTGT 999 Query 94913 TTATTGAAGCAGGCGACTCACTGAAA-TCTATTAACAAAACTGCTAACTCAATAATTGAA 94971 | |||||| | || | | | ||| |||||||| || ||| |||| | || Sbjct 998 TAATTGAATGTGCAGA-TAATTTAAACTCTATTAATGCTACAACTAGTGCAATTGTAAAA 940 Query 94972 TACATTTCTAAACGTGCCGGTATTGGTATCAACGTTGGTATGATTCGTGCTGAAGGTTCT 95031 || ||||| |||| || || || || || |||| |||| ||||| ||| ||| | Sbjct 939 TATGTTTCTCAACGAGCAGGAATAGGCATTAACGCTGGTCAAATTCGAGCTTTAGGAAGT 880 Query 95032 CGTATTGGCATGGGCGAAGTCAAGCATACCGGTGTTATTCCATTCTGGAAACATTTCCAG 95091 | ||| | | || |||| |||||||| |||||| || | ||||| ||||| Sbjct 879 CCTATCAGAAATGGAGAAGCATTTCATACCGGATGTATTCCTTTTTATAAACACTTCCAA 820 Query 95092 ACTGCTGTTAAATCATGTTCACAAGGTGGAATCCGTGGCGGCGCTGCTACTGCTTATTAT 95151 | || || ||||| ||||| ||||||||| | | || || || || |||| || ||| Sbjct 819 AGCGCAGTAAAATCTTGTTCTCAAGGTGGAGTTAGAGGAGGGGCCGCAACTGTTTTTTAC 760 Query 95152 CCTATTTGGCATTTGGAAGTTGAAAATCTGCTCGTTCTGAAAAACAACAAAGG 95204 || || |||||| | ||| |||||||| | | ||| | ||||| || | ||| Sbjct 759 CCAATATGGCATCTAGAAATTGAAAATTTATTAGTTTTAAAAAATAATAGAGG 707 >seq260686 Length=13603 Score = 107 bits (118), Expect = 2e-18 Identities = 292/447 (65%), Gaps = 0/447 (0%) Strand=Plus/Plus Query 94816 CGTTTTTATGATGCTGTAAGTACCCGTCAGGTTTCATTACCAACTCCTATTATGGCTGGA 94875 ||||| || ||||| | ||| | || |||| | || || || |||||| | || Sbjct 5148 CGTTTCTACGATGCGATCTCCACCTTTAAGATTTCGCTGCCGACGCCAATTATGTCCGGC 5207 Query 94876 GCACGTACACCAACCCGTCAATTTAGTTCTTGTGTGGTTATTGAAGCAGGCGACTCACTG 94935 | || || || || || || || || || || || | ||||| |||||| || Sbjct 5208 GTGCGCACCCCGACGCGCCAGTTCAGCTCCTGCGTACTGATTGAGTGCGGCGACAGCCTT 5267 Query 94936 AAATCTATTAACAAAACTGCTAACTCAATAATTGAATACATTTCTAAACGTGCCGGTATT 94995 | || |||||| || | | | | || | | ||| ||||| | ||||||||||| Sbjct 5268 GATTCCATTAACGCCACCTCCAGCGCGATTGTGAAGTACGTTTCTCAGCGTGCCGGTATC 5327 Query 94996 GGTATCAACGTTGGTATGATTCGTGCTGAAGGTTCTCGTATTGGCATGGGCGAAGTCAAG 95055 || || |||| ||| || ||||| || | || || || |||| Sbjct 5328 GGCATTAACGCCGGTCGCATCCGTGCGCTGGGCAGCCCGATCCGCGGCGGTGAAGCATTC 5387 Query 95056 CATACCGGTGTTATTCCATTCTGGAAACATTTCCAGACTGCTGTTAAATCATGTTCACAA 95115 || ||||| ||||| |||| || || |||||||| || || || || || || || Sbjct 5388 CACACCGGCTGCATTCCGTTCTATAAGCACTTCCAGACCGCGGTGAAGTCCTGCTCTCAG 5447 Query 95116 GGTGGAATCCGTGGCGGCGCTGCTACTGCTTATTATCCTATTTGGCATTTGGAAGTTGAA 95175 || || | || ||||| || || || | || || || |||||| ||||||| ||| Sbjct 5448 GGCGGCGTGCGCGGCGGTGCAGCGACCCTGTTCTACCCAATGTGGCATCTGGAAGTGGAA 5507 Query 95176 AATCTGCTCGTTCTGAAAAACAACAAAGGTGTCGATGAGAACCGTATTCGCCATATGGAC 95235 | ||||| || ||||| |||||| || || || | ||||| | || ||||||||| Sbjct 5508 AGCCTGCTGGTGCTGAAGAACAACCGCGGCGTTGAAGGCAACCGCGTGCGTCATATGGAC 5567 Query 95236 TACGGAATCCAGATGAACGACCTTATG 95262 ||||| | ||| ||||| | || ||| Sbjct 5568 TACGGCGTGCAGCTGAACAAGCTGATG 5594 >seq93888 Length=1140 Score = 86.0 bits (94), Expect = 7e-12 Identities = 180/264 (68%), Gaps = 6/264 (2%) Strand=Plus/Plus Query 93384 ATCGTATCAGCATGGAACCCGGCCGAACTAAAACAGATGGCCTTACCACCATGCCATTGT 93443 |||||||| |||||||| | || || | | ||||| | |||| |||||| Sbjct 24 ATCGTATCGGCATGGAATGTTGGAGAGTTAGATAAAATGGCGCTGGCACCTTGCCATGCC 83 Query 93444 TTTTACCAGTTCAACGTCCGTAACGGTTATCTTGACCTTCAGTGGTACCAGCGTTCTGTT 93503 |||| ||| ||| ||||| || || | || ||| || ||||| ||| | Sbjct 84 TTTTTCCAATTCTACGTCGTGAATGGCAAACTCAGTTGCCAGCTCTATCAGCGCTCTTGT 143 Query 93504 GACGTGTTCTTAGGATTGCCATTTAATATCGCCTCTTACGCCGCT-CTTGTGCATATTGT 93562 || || || ||||| || || |||||||||||| || | |||| || || ||||| || Sbjct 144 GATGTCTTTTTAGGCTTACCCTTTAATATCGCCAGCTATG-CGCTACTGGTCCATATGGT 202 Query 93563 GGCTAAGATGTGTAATCT--TATTCCTGGTGATTTAGTGTTCTCAGGCGGCAATACACAC 93620 ||| || |||| |||| | || || ||||| || | |||| ||| |||| ||| Sbjct 203 CGCTCAGCAGTGTGATCTCGAAGTC--GGCGATTTTGTTTGGACAGGGGGCGATACGCAC 260 Query 93621 ATCTATTCTAACCACGTTGAACAA 93644 |||||||||| ||| | |||||| Sbjct 261 CTCTATTCTAATCACTTAGAACAA 284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534327915690160