Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_019509.1 Length=49116 Score E Sequences producing significant alignments: (Bits) Value seq79893 125 2e-24 seq75855 91.5 5e-14 >seq79893 Length=11432 Score = 125 bits (138), Expect = 2e-24 Identities = 115/143 (80%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 1748 GCCCGCCGTTCGCGTATCCACGCATCATGCGGTAAAGGTTTTTCACTCCGATCCTGCTAG 1807 ||||||| | ||||| || |||||||||| |||||||||||| || ||||| | ||| | Sbjct 5199 GCCCGCCATCAGCGTAACCCCGCATCATGCCGTAAAGGTTTTTGACGCCGATAC-GCTGG 5141 Query 1808 TT-GCCTCTTTGGTGAATACAAATTCGCCACCATGAACGACACCTTTCGGCTCGTACTTC 1866 | |||||||||||||| ||||| || || ||||| || || ||||| ||||| |||||| Sbjct 5140 GTCGCCTCTTTGGTGAAAACAAACTCACCGCCATGCACCACGCCTTTGGGCTCATACTTC 5081 Query 1867 CCGCCAGCGCCAGTGTATCCGCC 1889 || || | ||||| ||||| || Sbjct 5080 CCACCGTCTCCAGTATATCCACC 5058 >seq75855 Length=31220 Score = 91.5 bits (100), Expect = 5e-14 Identities = 114/151 (75%), Gaps = 4/151 (3%) Strand=Plus/Minus Query 1750 CCGCCGTTCGCGTATCCACGCATCATGCGGTAAAGGTTTTTCACTCCGATCCTGCT-AGT 1808 || ||| | || || || ||||||||| ||||||||||| ||| ||||| | ||| ||| Sbjct 9089 CCACCGCTGGCATAGCCGCGCATCATGTCGTAAAGGTTTTCCACGCCGATTC-GCTCAGT 9031 Query 1809 TGCCTCTTTGGTGAATACAAATTCGCCACCATGAACGACACCTTTCGGCTCGTACTT-CC 1867 || ||||||||||| |||||||| || ||| || | ||| ||| ||| | || || Sbjct 9030 CGCTTCTTTGGTGAAGACAAATTCCCCTTTATGCACAATACCCGCCGGGTCGAATTTGCC 8971 Query 1868 CGCCAGCGCCAGTGTATCCGCCACCAGCGAA 1898 | || || || ||||| ||||| ||| |||| Sbjct 8970 CCCCTGC-CCGGTGTAGCCGCCTCCATCGAA 8941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156118570806956