Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_019515.1 Length=93839 Score E Sequences producing significant alignments: (Bits) Value seq97837 127 1e-24 >seq97837 Length=15579 Score = 127 bits (140), Expect = 1e-24 Identities = 312/470 (66%), Gaps = 15/470 (3%) Strand=Plus/Minus Query 22074 GCTTCAATTGAGTAATAGTTCAACATCATGAAGAATGTACGAGCAAAGTCTTTCGCTTCT 22133 ||||| | ||| || || |||| |||||||||||| ||| ||||| ||| |||||| Sbjct 8601 GCTTCCAATGAATAGTAATTCATCATCATGAAGAACGTATTGGCAAAATCTAATGCTTCT 8542 Query 22134 TCAGATTCATAAGCAATCAAGTTTTTAGATAAGTAGCCATGTAAGTTCATAGCTCCTAAT 22193 |||||||| || ||| |||| | || | | || |||| |||||| || ||||| Sbjct 8541 GTCGATTCATACATGATAAAGCTTTTGGCTAGGAAACCGTGTAGGTTCATCGCACCTAAG 8482 Query 22194 CCTACTGAATGTAATTCTTCATTTGCTTTTTTAACACCTGGGGCGTTTTGGATCACCGAC 22253 ||||| ||||| || || |||||||| || | ||| | ||| ||| | | | Sbjct 8481 CCTACCGAATGCAACTCGCGGTTTGCTTTGGCAATAGTTGGTACCATTTCGATATCTGTC 8422 Query 22254 ATATCTGATACCGCAGTTAATGCGTACATTGCATTATGGATAATCATACGT--AGTCGCT 22311 | ||| | ||| | || | || ||| || | | || | | | | | |||| Sbjct 8421 ACATCGGTTACGACGGTAAGCGCACGCATCGC--TGTTTTTACTGCTTCTTTGATGCGCT 8364 Query 22312 TGTCTTCCATTACGTTTACGATGTTTAGTGAACCTAAGTTACAGCTAATATCGTTACGAA 22371 ||| ||||||||| | | | || ||||| |||| ||||| |||| ||| |||| Sbjct 8363 TGTTATCCATTACGGTAGCCACATTGAGTGAGCCTAGATTACAAGAAATACCGTAGCGAA 8304 Query 22372 TAATGTCTTCTTCTCCATAATCCGTAATTGTT----GATACTTCGGATAGTTGGAAGATT 22427 | | ||||| | ||||| | |||| | |||||||| |||| ||| | ||| Sbjct 8303 TGGTATCTTCCTTGCCATA----GATATTGATATCCGATACTTCAGATACTTGCATGATC 8248 Query 22428 TCTGTACAAAGATTAGACATTTTAACTTCGCCTATTTCGCTAAGTGGATGATTGTCTCCA 22487 || ||||||||||| || | ||| || | || || || |||| | ||| ||| | Sbjct 8247 TCGGTACAAAGATTCGAGAATTTTACATTTCCGATGCCGTTAAGAGCATG---CGCTCTA 8191 Query 22488 TTTGCATTCCCTTTGTACATTAAGTACGGGTATCCGCTCTCTTGTTGTGT 22537 || ||||| ||||||| | | || || ||||| ||||| ||| || Sbjct 8190 TTCGCATTTTCTTTGTAGAAGATATATGGATATCCCGACTCTTTTTGAGT 8141 Score = 123 bits (136), Expect = 1e-23 Identities = 289/430 (67%), Gaps = 6/430 (1%) Strand=Plus/Minus Query 22736 TTGCATGAATTTATCCGGAACAATAACACCGATTGACATAGATTGAATTCTGCTCTTT-T 22794 || ||||||||| || || || |||| ||| || || | |||| || | || |||| | Sbjct 7966 TTCCATGAATTTGTCGGGCACGATAATACCAATAGATAGTGATTTGATAC-GCACTTTCT 7908 Query 22795 CATCTACGTTAATTCGTTTTGTATCTAACATGCGGATAATGTCCATATGGAAGATATTTA 22854 |||| | || || ||| ||| || | ||| ||| ||||| || || | Sbjct 7907 CATCGGCATTGATCTTTTTACAATCCAAAAACTCTTCAATATCCGAGTGGAAAATGTTCA 7848 Query 22855 AGTAAGTTGCTCCTGCACCTTTTCGCTGTCCTAATTGGTTTGCGTAAGAGAATGCATCTT 22914 | || || ||||||||| || || ||||| ||||| ||||||||||| | ||||| Sbjct 7847 AATATACCGCACCTGCACCTGGGCGTTGCCCTAACTGGTTCGCGTAAGAGAACGTATCTT 7788 Query 22915 CTAATAACTTCATTACTGGAACAATACCGCTACTT-GCTCCC-TCGATTTCTTTAATCGG 22972 | | | ||||| | || |||||| || | || || || | | ||||||||| Sbjct 7787 CCATGATTTTCATGATCGG--CAATACACCTCCAGCGCGACCATCTACTCCTTTAATCGC 7730 Query 22973 GTCTGAAGTAGCTCTTATTTTAGATAAGTTTAATGCTACTCCACCGCCAATTTTCGATAA 23032 || | || | ||||| || | ||| |||| || ||||| || || |||| Sbjct 7729 TTCGCCACGCGCACGGATTTTGGAGATGTTAAATGACACACCACCACCGATAGAAGATAG 7670 Query 23033 CTGCATTGCTTTGTTAATTGCAAATCCAATTCCGTTTAAATCGTCCCCAACTTCAGTAAG 23092 || |||||| || ||| || | |||||||||||||| | ||| ||||| ||| | Sbjct 7669 CTTCATTGCCGAGTCAATCGCGTAGCCAATTCCGTTTAAGTTGTCGCCAACCTCATCTAA 7610 Query 23093 GAAGCATGATACTAATTCACCACGTCTTGCTTTTCCACTATTTAAGAAGGTAGGCGTTGC 23152 ||| || || ||||| || ||| |||| |||||| || | ||| || ||||| || Sbjct 7609 GAAACAAGAAACTAACTCGCCAGATCTTTTCTTTCCAGCGTTCAGGAATGTCGGCGTAGC 7550 Query 23153 GGGTTGATAT 23162 ||| |||||| Sbjct 7549 GGGCTGATAT 7540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 298333749737800