Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_019522.1 Length=48454 Score E Sequences producing significant alignments: (Bits) Value seq194023 132 1e-26 seq30178 123 8e-24 seq259146 111 5e-20 seq287784 104 7e-18 seq201909 98.7 3e-16 seq11972 87.8 6e-13 seq404846 84.2 7e-12 >seq194023 Length=5833 Score = 132 bits (146), Expect = 1e-26 Identities = 115/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 7942 ATGAGCATGAACTTAATGGCGAAAGCCATGAGCCGAAAAGTCGGTAACCCACTACGTAAG 8001 ||||||||||| |||||||| |||||||||||| || || || |||||| || | ||| Sbjct 1270 ATGAGCATGAATTTAATGGCTAAAGCCATGAGCATTAAGGTTGGCAACCCATTAAGAAAG 1211 Query 8002 CTGGTGCTCATTAAGCTGGCTGATAACGCGAATGACAAAGGTGAATGCTGGCCGTCATAC 8061 || ||||| || ||||| ||||| ||||| || || ||||| ||||||||||| || ||| Sbjct 1210 CTTGTGCTGATAAAGCTTGCTGACAACGCCAACGATAAAGGCGAATGCTGGCCTTCCTAC 1151 Query 8062 CAGCATGTCGCTGATCAGTGTGA 8084 ||||| | || || ||||| || Sbjct 1150 CAGCACATTGCCGACCAGTGCGA 1128 >seq30178 Length=30577 Score = 123 bits (136), Expect = 8e-24 Identities = 133/171 (78%), Gaps = 19/171 (11%) Strand=Plus/Minus Query 371 CACGGAATTTAAAATCCCTCGGCGTTCGCGCTGTGCGGGTTCAAGTCCCGCCCCGGGCAC 430 || || ||||||||||||||||| | | |||||| ||||||||||||| |||||||||| Sbjct 9046 CAAGGGATTTAAAATCCCTCGGCTTATG-GCTGTGTGGGTTCAAGTCCCACCCCGGGCAC 8988 Query 431 CA---TTGA-------TTTAAAAAGAATTAAAACAAGCACTTATGTGCAATGTCGTAGAC 480 || | || |||||| |||| ||||||||| | | ||||||||||| || Sbjct 8987 CATCTTCGAACTACCGATTAAAACGAATAAAAACAAGC---TGTAAGCAATGTCGTA-AC 8932 Query 481 CGCC---GAGAGGCGGtttttttGTGCCTGAAAGTCC-CTTTCCTAATATT 527 |||| || ||||||||||||| ||||||||| ||| |||||| | |||| Sbjct 8931 CGCCCCTGAAAGGCGGTTTTTTTATGCCTGAAATTCCTCTTTCCCACTATT 8881 >seq259146 Length=2880 Score = 111 bits (122), Expect = 5e-20 Identities = 142/195 (73%), Gaps = 3/195 (2%) Strand=Plus/Plus Query 21061 GGCTGCTCGACTACACGTACCGTTTACGTGCCAGCGCAATGCGTACCACTGCCAGCGGAA 21120 ||||||||||||||||| || ||||| |||||||||||| || | | || Sbjct 219 GGCTGCTCGACTACACGCTTAGTCTACGTTCCAGCGCAATGCACGCCTATCCGGGCCTCG 278 Query 21121 CTGACACAGCCAGTGCTGGTGCCGCTGCCACCGGCTGCCGATTGACGTACGCACAGGCTG 21180 ||| ||||| ||||||| |||||||| ||||| || |||||||| ||||| | Sbjct 279 TTGATGAAGCCAATGCTGGTACCGCTGCCCCCGGCCCCC---TGACGTACTGTCAGGCGG 335 Query 21181 TTTACTGGATTGACCCGCTACTGACGGTAATTGACCAGGCTAATAGCCAACTAGCCGGCA 21240 | ||||||||||| | || |||| ||||||||||| || |||||||| || |||| Sbjct 336 TACTGTGGATTGACCCATTGCTAACGGCGATTGACCAGGCCAACAGCCAACTGGCTGGCA 395 Query 21241 TACGCGAAGCTGAAC 21255 | || || ||||| Sbjct 396 TCCGAGACATTGAAC 410 >seq287784 Length=1247 Score = 104 bits (114), Expect = 7e-18 Identities = 115/149 (77%), Gaps = 16/149 (11%) Strand=Plus/Plus Query 371 CACGGAATTTAAAATCCCTCGGCGTTCGCGCTGTGCGGGTTCAAGTCCCGCCCCGGGCAC 430 || || ||||||||||||||||| | ||||||||||||||||||||||||||||||| Sbjct 441 CAAGGGATTTAAAATCCCTCGGCTGTAAGGCTGTGCGGGTTCAAGTCCCGCCCCGGGCAC 500 Query 431 CATTGATTT---------AAAAAGAATTAAA--ACAAGCACTTATG-TGCAATGTCGTAG 478 ||| |||| |||| | |||| | ||||| |||| | ||||||||| Sbjct 501 CAT--ATTTCTGCCGAAGAAAATCTAATAAAATAAAAGCA-ATATGCAGTAATGTCGTA- 556 Query 479 ACCGCCGAGAGGCGGtttttttGTGCCTG 507 |||||| | ||||||||||||||||||| Sbjct 557 ACCGCCCAAGGGCGGTTTTTTTGTGCCTG 585 >seq201909 Length=21394 Score = 98.7 bits (108), Expect = 3e-16 Identities = 130/178 (73%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 15700 CGTAAAGAAGCCCGCAACAGAGAATGCCAGGTGCGGATGCCGGGTATCTGCAATCACAAT 15759 || |||||||| || ||| ||||||||||| || |||| |||||||||||| |||| Sbjct 7152 CGAAAAGAAGCGCGGGGCAGGGAATGCCAGGTCAGGCTGCCAGGTATCTGCAATGGCAAT 7093 Query 15760 TCTGAAACCACAGTGTTAGCACATTACCGTCTTGCAGGAACCTGCGGCACTGGAATTAAA 15819 |||||||| || | || || ||||| | | ||| | ||| || |||||||| ||| Sbjct 7092 TCTGAAACGGTCGTACTCGCGCACTACCGGATGGTAGGCATCTGTGGAACTGGAATGAAA 7033 Query 15820 CCCCCTGATATTCAAGGTGCATGGGCGTG-TAGCGCGTGCCATGACGAAATCGATCGC 15876 || ||| || || ||||||||||| | ||| ||||| || || || || ||| Sbjct 7032 CCTGATGACCTTTTCGGCGCATGGGCGTGCTCTCGC-TGCCACGATGAGATAGACCGC 6976 >seq11972 Length=3077 Score = 87.8 bits (96), Expect = 6e-13 Identities = 117/162 (72%), Gaps = 3/162 (2%) Strand=Plus/Plus Query 21054 GCTGATCGGCTGCTCGACTACACGTACCGTTTACGTGCCAGCGCAATGCGTACCACTGCC 21113 |||| ||| |||||||||||||| | ||| |||||||||||||||||| || | || Sbjct 212 GCTGGCCGGTTGCTCGACTACACGAATCGTCTACGTGCCAGCGCAATGCACGCCTATCCC 271 Query 21114 AGCGGAACTGACACAGCCAGTGCTGGTGCCGCTGCCACCGGCTGCCGATTGACGTACGCA 21173 || ||| ||||| ||||||| || ||||| ||||| || |||| ||| Sbjct 272 GGCCTCGTTGATGAAGCCAATGCTGGTACCACTGCCCCCGGCACCC---TGACTTACTGC 328 Query 21174 CAGGCTGTTTACTGGATTGACCCGCTACTGACGGTAATTGAC 21215 ||||| || |||||| | | ||||||||| || || ||| Sbjct 329 CAGGCGGTGCTGTGGATTAATCAGCTACTGACAGTCATCGAC 370 >seq404846 Length=244 Score = 84.2 bits (92), Expect = 7e-12 Identities = 82/104 (79%), Gaps = 9/104 (9%) Strand=Plus/Minus Query 371 CACGGAATTTAAAATCCCTCGGCGTTCGCGCTGTGCGGGTTCAAGTCCCGCCCCGGGCAC 430 || || ||||||||||||||||| | |||||||||||||||||||||||| |||||| Sbjct 224 CAAGGGATTTAAAATCCCTCGGCTGTAAGGCTGTGCGGGTTCAAGTCCCGCCCTGGGCAC 165 Query 431 CATTGATTTAAAAAGAATTAAAACAAGCACTTATGTGCAATGTC 474 ||| ||| | |||| | |||||| | ||||||||||| Sbjct 164 CATCGAT-----ATTAATT---ATAAGCAC-TGTGTGCAATGTC 130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 154012729210432