Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_019538.1 Length=231743 Score E Sequences producing significant alignments: (Bits) Value seq260686 136 6e-27 seq1462 131 2e-25 seq462907 109 8e-19 seq286911 102 1e-16 seq65234 95.1 2e-14 seq366053 87.8 3e-12 seq255299 87.8 3e-12 seq189010 87.8 3e-12 seq117163 87.8 3e-12 seq153512 84.2 3e-11 >seq260686 Length=13603 Score = 136 bits (150), Expect = 6e-27 Identities = 246/360 (68%), Gaps = 0/360 (0%) Strand=Plus/Minus Query 119939 GTTATTCTTCAATACAAGCAGTTTCTCAACCTCCAAATGCCACATAGGGTAATTCAGAGT 119998 ||| ||||||| || ||||| | || || |||| ||||||||| ||||| ||| || Sbjct 5531 GTTGTTCTTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAGGGT 5472 Query 119999 AGCAGAGCCGCCACGTAGAGCACCTTGCGAACAGCTCTTAACCGCAGTATGGAAGTGCTT 120058 || | ||||| || | | || || || ||| ||| ||||| || ||||||||||| Sbjct 5471 CGCTGCACCGCCGCGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTGCTT 5412 Query 120059 GTAGAATGGGATTACGCCGGTATGGGTTGCTTCGCCGTTGCGAATTGGTGAACCCTCCGC 120118 ||||| || || |||||| ||| |||||| ||| ||| || || ||| ||| Sbjct 5411 ATAGAACGGAATGCAGCCGGTGTGGAATGCTTCACCGCCGCGGATCGGGCTGCCCAGCGC 5352 Query 120119 ACGAATAGCACCAGCATTAATACCAATACCAGCACGTTGACTGATATAACTAATAATAGA 120178 ||| || ||| || ||||| || ||||| ||||| ||| | || | | ||| | Sbjct 5351 ACGGATGCGACCGGCGTTAATGCCGATACCGGCACGCTGAGAAACGTACTTCACAATCGC 5292 Query 120179 TGCAGACGTATCGTTAATAGATTTCAGAGAATCGCCGGATTCAATTTTCACACACGAACT 120238 || || ||||||| || | || |||||| | ||||| || || || || Sbjct 5291 GCTGGAGGTGGCGTTAATGGAATCAAGGCTGTCGCCGCACTCAATCAGTACGCAGGAGCT 5232 Query 120239 AAATTGGCGCGTTGGGGTGCGGGCACCACCCAAAATAGGGGTTGGGATTGAAATCTTAAA 120298 || |||||||| |||||||| | || || ||| || || || | ||||||||||| Sbjct 5231 GAACTGGCGCGTCGGGGTGCGCACGCCGGACATAATTGGCGTCGGCAGCGAAATCTTAAA 5172 >seq1462 Length=4781 Score = 131 bits (144), Expect = 2e-25 Identities = 285/422 (68%), Gaps = 6/422 (1%) Strand=Plus/Minus Query 119880 AGCTTATTGATATGCACACTGTAATCAAGACCCCGGATCCGGGTTTCATCAGTACCCTTG 119939 || || ||||| || || | |||||| || |||| ||| | | ||| ||| | Sbjct 1442 AGTTTGTTGATTTGTACGCCGTAATCTAGGTGACGGACACGGTTACCTTCAACACCACGG 1383 Query 119940 TTATTCTTCAATAC-AAGCAGTTTCTCAACCTCCAAATGCCACATAGGGTAATTCAGAGT 119998 ||||| |||| || || || || |||| ||||| ||||||||||||||| ||| || Sbjct 1382 TTATTTTTCAGGACTAATAAGCTT-TCAATTTCCAAGTGCCACATAGGGTAAAACAGTGT 1324 Query 119999 AGCAGAGCCGCCACGTAGAGCACCTTGCGAACAGCTCTTAACCGCAGTATGGAAGTGCTT 120058 || | || || |||| | |||||||| || || || || || |||||||| || Sbjct 1323 CGCGGCACCCCCGCGTACGCCGCCTTGCGAGCAAGATTTCACGGCCGTCTGGAAGTGTTT 1264 Query 120059 GTAGAATGGGATTACGCCGGTATGGGTTGCTTCGCCGTTGCGAATTGGTGAACCCTCCGC 120118 |||||| ||||| ||||||||| ||||| || || ||||| || ||| Sbjct 1263 GTAGAACGGGATACAACCGGTATGGAAAGCTTCACCACCACGGATTGGGCTGCCTAGCGC 1204 Query 120119 ACGAATAGCACCAGCATTAATACCAATACCAGCACGTTGACTGATA--TAACTAATAATA 120176 ||||||| |||||||| ||||| || || || ||||| ||| | || ||| ||| Sbjct 1203 ACGAATACGGCCAGCATTGATACCGATCCCTGCGCGTTG--TGAAACGTATTTAACGATA 1146 Query 120177 GATGCAGACGTATCGTTAATAGATTTCAGAGAATCGCCGGATTCAATTTTCACACACGAA 120236 | ||| || |||| ||||| | | |||||| | || || ||| || || Sbjct 1145 GCACTAGAAGTGGCGTTGATAGAGTCTAAGCTATCGCCACACTCGATAAGCACGCATGAG 1086 Query 120237 CTAAATTGGCGCGTTGGGGTGCGGGCACCACCCAAAATAGGGGTTGGGATTGAAATCTTA 120296 || |||||||| || || || || | ||| ||| || || || || | ||||| ||| Sbjct 1085 CTGAATTGGCGAGTCGGCGTCCGTACCCCAGCCATGATTGGCGTAGGTAAGGAAATTTTA 1026 Query 120297 AA 120298 || Sbjct 1025 AA 1024 Score = 105 bits (116), Expect = 1e-17 Identities = 144/198 (73%), Gaps = 5/198 (3%) Strand=Plus/Minus Query 117804 GCGATTTCTACCATCTCTGGGTCGTCTTTACCGCTTTGCCAGC-GATGAAGGATAGTCTG 117862 || || ||| ||| || || || |||| ||||||| || ||| ||| || ||| ||| Sbjct 3582 GCAATCTCTTTCATTTCCGGATCATCTTCACCGCTTCGC-AGCAGATTTAGCATATGCTG 3524 Query 117863 GGTTGCCTTAAGGTGTACTGCTTCGTCACGGGCGATTAGACGCATGATCTTAGCACTACC 117922 ||| || | ||||| | |||||||| || ||||| ||||| |||||||| ||| |||| Sbjct 3523 TGTTCCCGTCAGGTGCAGGGCTTCGTCCCGTGCGATAAGACGGATGATCTTGGCATTACC 3464 Query 117923 TTCCATCATCCCAGTGAATTCTGGGAAAGAGAAGTTACAGACAAAACTAACATAGAACCG 117982 |||||||| | || || | ||| | ||| ||| |||| || || ||||| || Sbjct 3463 TTCCATCAGCTCA---CGCTCGGCGAACGCGAATGAACAAGCAAAGCTCACGTAGAAACG 3407 Query 117983 AATGGCTTCAAGTGCGTT 118000 ||||||||| || || || Sbjct 3406 AATGGCTTCGAGGGCATT 3389 >seq462907 Length=336 Score = 109 bits (120), Expect = 8e-19 Identities = 72/80 (90%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 198935 GGCCCCTTAGCTCAGTTGGTTAGAGCAGCCGACTCATAATCGGTTGGTCACTGGTTCGAG 198994 |||||| |||||||||||||||||||| ||||||||||||| |||||| ||||||| || Sbjct 98 GGCCCCATAGCTCAGTTGGTTAGAGCACGCGACTCATAATCGCTTGGTCGCTGGTTCAAG 39 Query 198995 TCCAGTAGGGGCCACCAGAT 199014 ||||| ||||||||||||| Sbjct 38 TCCAGCTGGGGCCACCAGAT 19 >seq286911 Length=6367 Score = 102 bits (112), Expect = 1e-16 Identities = 72/81 (89%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 198934 TGGCCCCTTAGCTCAGTTGGTTAGAGCAGCCGACTCATAATCGGTTGGTCACTGGTTCGA 198993 ||||||||||||||||| ||||||||||| ||||||||||||| |||||| ||||||| | Sbjct 5791 TGGCCCCTTAGCTCAGT-GGTTAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAA 5733 Query 198994 GTCCAGTAGGGGCCACCAGAT 199014 |||| ||||||||||| || Sbjct 5732 ACCCAGCAGGGGCCACCAAAT 5712 >seq65234 Length=1614 Score = 95.1 bits (104), Expect = 2e-14 Identities = 282/435 (65%), Gaps = 0/435 (0%) Strand=Plus/Plus Query 119883 TTATTGATATGCACACTGTAATCAAGACCCCGGATCCGGGTTTCATCAGTACCCTTGTTA 119942 ||||| || || ||| ||||||||| || | | |||| ||| | || | ||| Sbjct 656 TTATTAATTTGTACAGCATAATCAAGATGACGTACTCTATTTTCTTCAATTCCTCTATTA 715 Query 119943 TTCTTCAATACAAGCAGTTTCTCAACCTCCAAATGCCACATAGGGTAATTCAGAGTAGCA 120002 || || || || | | || |||| || | |||||| || |||||| | ||| || Sbjct 716 TTTTTTAAAACTAATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAAACAGTTGCG 775 Query 120003 GAGCCGCCACGTAGAGCACCTTGCGAACAGCTCTTAACCGCAGTATGGAAGTGCTTGTAG 120062 | || || | | ||||||| ||||| || || || | |||||||| || || Sbjct 776 GCCCCTCCTCTAACTCCACCTTGAGAACAAGATTTTACTGCGCTTTGGAAGTGTTTATAA 835 Query 120063 AATGGGATTACGCCGGTATGGGTTGCTTCGCCGTTGCGAATTGGTGAACCCTCCGCACGA 120122 || || || |||||||| |||||| || || | || || || || ||| Sbjct 836 AAAGGAATACATCCGGTATGAAATGCTTCTCCATTTCTGATAGGACTTCCTAAAGCTCGA 895 Query 120123 ATAGCACCAGCATTAATACCAATACCAGCACGTTGACTGATATAACTAATAATAGATGCA 120182 || |||||| ||||| || || || || |||||| | ||| | | ||| | | Sbjct 896 ATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTACAATTGCACTA 955 Query 120183 GACGTATCGTTAATAGATTTCAGAGAATCGCCGGATTCAATTTTCACACACGAACTAAAT 120242 | ||| | |||||||| || | | ||| | |||||||| |||||| ||||||||| Sbjct 956 GTTGTAGCATTAATAGAGTTTAAATTATCTGCACATTCAATTAACACACAAGAACTAAAT 1015 Query 120243 TGGCGCGTTGGGGTGCGGGCACCACCCAAAATAGGGGTTGGGATTGAAATCTTAAATAGA 120302 || || ||||| || | | || || ||| || || || | || || ||||| Sbjct 1016 TGACGAGTTGGTGTTCTTACTCCTGACATAATCGGTGTGGGTAGAGATATTTTAAAAGTG 1075 Query 120303 GAAGCCGCATTATAA 120317 ||| ||||||||| Sbjct 1076 GAAATTGCATTATAA 1090 >seq366053 Length=223 Score = 87.8 bits (96), Expect = 3e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 198612 TGCGCTGTTAGCTCAGTTGGATAGAGCAACGTTCTTCTAAAGCGTGGGTCACTGGTTCGA 198671 ||||| ||||||||||||||||||||| || ||||||| ||| |||||| ||||||| Sbjct 146 TGCGCCCTTAGCTCAGTTGGATAGAGCACCGGCCTTCTAAGCCGTAGGTCACAGGTTCGA 205 Query 198672 ATCCAGTACGGCGCACCA 198689 |||| ||| |||| |||| Sbjct 206 ATCCTGTAGGGCGTACCA 223 >seq255299 Length=12406 Score = 87.8 bits (96), Expect = 3e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 198612 TGCGCTGTTAGCTCAGTTGGATAGAGCAACGTTCTTCTAAAGCGTGGGTCACTGGTTCGA 198671 ||||| ||||||||||||||||||||| || ||||||| ||| |||||| ||||||| Sbjct 3371 TGCGCCCTTAGCTCAGTTGGATAGAGCACCGGCCTTCTAAGCCGTAGGTCACAGGTTCGA 3312 Query 198672 ATCCAGTACGGCGCACCA 198689 |||| ||| |||| |||| Sbjct 3311 ATCCTGTAGGGCGTACCA 3294 >seq189010 Length=996 Score = 87.8 bits (96), Expect = 3e-12 Identities = 67/78 (86%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 198931 ATTTGGCCCCTTAGCTCAGTTGGTTAGAGCAGCCGACTCATAATCGGTTGGTCACTGGTT 198990 || |||||| |||||||||| ||| ||||||| ||||||||||||| |||||| |||||| Sbjct 853 ATATGGCCCTTTAGCTCAGT-GGTCAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTT 795 Query 198991 CGAGTCCAGTAGGGGCCA 199008 | | ||||| | |||||| Sbjct 794 CAAATCCAGCAAGGGCCA 777 >seq117163 Length=9220 Score = 87.8 bits (96), Expect = 3e-12 Identities = 73/88 (83%), Gaps = 1/88 (1%) Strand=Plus/Plus Query 199774 GAACTTTTCGGTGATTAGCGCAG-TTGGTAGCGCGTCTGGTTTGGGACCAGAGGGTCACA 199832 ||| | ||||| || |||||||| |||||||||| ||||||||||||||| ||||| | Sbjct 6966 GAAGTATTCGGCGAGTAGCGCAGCTTGGTAGCGCAACTGGTTTGGGACCAGTGGGTCGGA 7025 Query 199833 GGTTCGAGTCCTGTATCACCGACCACTT 199860 ||||||| |||| | || ||||||| || Sbjct 7026 GGTTCGAATCCTCTCTCGCCGACCAATT 7053 Score = 86.0 bits (94), Expect = 9e-12 Identities = 69/82 (84%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 199780 TTCGGTGATTAGCGCAG-TTGGTAGCGCGTCTGGTTTGGGACCAGAGGGTCACAGGTTCG 199838 ||||| || |||||||| |||||||||| ||||||||||||||| ||||| ||||||| Sbjct 6806 TTCGGCGAGTAGCGCAGCTTGGTAGCGCAACTGGTTTGGGACCAGTGGGTCGGAGGTTCG 6865 Query 199839 AGTCCTGTATCACCGACCACTT 199860 | |||| | || ||||||| || Sbjct 6866 AATCCTCTCTCGCCGACCAATT 6887 >seq153512 Length=21451 Score = 84.2 bits (92), Expect = 3e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 199781 TCGGTGATTAGCGCAG-TTGGTAGCGCGTCTGGTTTGGGACCAGAGGGTCACAGGTTCGA 199839 |||| || |||||||| |||||||||| ||||||||||||||| ||||| |||||||| Sbjct 5413 TCGGCGAGTAGCGCAGCTTGGTAGCGCAACTGGTTTGGGACCAGTGGGTCGGAGGTTCGA 5472 Query 199840 GTCCTGTATCACCGACCA 199857 |||| | || ||||||| Sbjct 5473 ATCCTCTCTCGCCGACCA 5490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 736822759865480