Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_019540.1 Length=49390 Score E Sequences producing significant alignments: (Bits) Value seq255299 91.5 5e-14 seq366053 89.7 2e-13 seq102074 84.2 7e-12 seq70204 80.6 8e-11 >seq255299 Length=12406 Score = 91.5 bits (100), Expect = 5e-14 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 44194 GCCCCGTTAGTTCAATTGGATAGAGCAACGGCCTTCTAAGCCGTGAGTTACAGGTTCGAA 44253 || || |||| ||| |||||||||||| |||||||||||||||| || ||||||||||| Sbjct 3370 GCGCCCTTAGCTCAGTTGGATAGAGCACCGGCCTTCTAAGCCGTAGGTCACAGGTTCGAA 3311 Query 44254 TCCTGTACGGGGTGCCAA 44271 ||||||| || || |||| Sbjct 3310 TCCTGTAGGGCGTACCAA 3293 >seq366053 Length=223 Score = 89.7 bits (98), Expect = 2e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 44194 GCCCCGTTAGTTCAATTGGATAGAGCAACGGCCTTCTAAGCCGTGAGTTACAGGTTCGAA 44253 || || |||| ||| |||||||||||| |||||||||||||||| || ||||||||||| Sbjct 147 GCGCCCTTAGCTCAGTTGGATAGAGCACCGGCCTTCTAAGCCGTAGGTCACAGGTTCGAA 206 Query 44254 TCCTGTACGGGGTGCCA 44270 ||||||| || || ||| Sbjct 207 TCCTGTAGGGCGTACCA 223 >seq102074 Length=1593 Score = 84.2 bits (92), Expect = 7e-12 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 44200 TTAGTTCAATTGGATAGAGCAACGGCCTTCTAAGCCGTGAGTTACAGGTTCGAATCCTGT 44259 |||| ||| |||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 1070 TTAGCTCAGCTGGATAGAGCAACGGCCTTCTAAGCCGTAGGTCACAGGTTCGAATCCTGT 1129 Query 44260 A 44260 | Sbjct 1130 A 1130 >seq70204 Length=1350 Score = 80.6 bits (88), Expect = 8e-11 Identities = 64/77 (83%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 44194 GCCCCGTTAGTTCAATTGGATAGAGCAACGGCCTTCTAAGCCGTGAGTTACAGGTTCGAA 44253 || || |||| ||| |||||||||||| |||||||||||||||| || | ||||||||| Sbjct 1006 GCGCCCTTAGCTCAGTTGGATAGAGCACCGGCCTTCTAAGCCGTAGGTCATAGGTTCGAA 947 Query 44254 TCCTGTACGGGGTGCCA 44270 |||| || || || ||| Sbjct 946 TCCTATAGGGCGTACCA 930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156990172917904