Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_019544.1 Length=49335 Score E Sequences producing significant alignments: (Bits) Value seq494847 266 1e-66 seq105800 141 3e-29 seq63939 129 2e-25 seq93888 114 4e-21 seq2677 91.5 5e-14 seq1414 89.7 2e-13 >seq494847 Length=1062 Score = 266 bits (294), Expect = 1e-66 Identities = 510/742 (69%), Gaps = 20/742 (3%) Strand=Plus/Minus Query 45430 GAAAACTATGAAACAATATCTAGACTTGCTGCAAGACATCTTAGAAAACGGCGTGGAGAA 45489 ||||| |||||||| ||||| | || |||| || | | || | ||| | || Sbjct 768 GAAAA--ATGAAACAGTATCTGGCGTTAATGCAGCACGTGCTCGAGCAGGGCACGCCCAA 711 Query 45490 AGAAGATCGGACGGGAACAGGCACATTGTCGGTGTTCGGCCGTCAGCTGCGCTTTAACTT 45549 | | || || || ||||| ||||| ||||| | || || | |||| |||| || || | Sbjct 710 AAATGACCGCACCGGAACCGGCACGCTGTCGATTTTTGGTCATCAGATGCGTTTCAATCT 651 Query 45550 GCAGGACGGATTCCCGCTCGTGACGACGAAAAAGTTGCATATCCGCTCGATCATTTATGA 45609 ||||||||| || ||||| || || || || |||| ||| | ||||| |||||| |||| Sbjct 650 GCAGGACGGTTTTCCGCTGGTCACCACCAAGAAGTGCCATTTGCGCTCTATCATTCATGA 591 Query 45610 ACTGCTCTGGTTTTTAAAAGGCGATACGAATGTTCGCTATTTGCAGGAGAATGGTGTGAC 45669 ||||| ||||| | || || || || || | ||| || |||| ||| ||| | Sbjct 590 GCTGCTGTGGTTCCTTAACGGTGACACTAACATCGCCTACCTGAAGGAAAATAAGGTGTC 531 Query 45670 GATTTGGGACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCAATCTACGGCGCGCAATG 45729 ||| ||||||||||||||||||||||| || || ||||| || | || ||| || || Sbjct 530 GATCTGGGACGAGTGGGCCGATGAAAAGGGTGACCTCGGGCCGGTTTATGGCAAACAGTG 471 Query 45730 GCGGTCGTGGAAAGGGGCTGACGGGAAAACGGTCGACCAAATT-GC--GGCGGTCTTTAA 45786 ||| ||| | || || ||| | ||||||| | || || |||| | Sbjct 470 GCGCAGCTGGGGGGCAGCGGATGGGCGCCAGATCGACCAGCTGAGCAAGGTGGTCGAACA 411 Query 45787 G--GAAATCAAGCGCAACCCGAACTCGCGGCGGTTGCTTGTGAGCGCGTGGAACGT-GGC 45843 | |||| |||| ||||| ||||||| || | | || || |||||||| ||| Sbjct 410 GCTGAAA---AGCG--ACCCGGACTCGCGCCGCATCATCGTTTCTGCATGGAACGTCGGC 356 Query 45844 AAAGTTGGGGGAAATGAAGTTGCCCCCATGTCATTACGC---CTTTCAGTTTTACGTCGC 45900 || | || || ||| | || |||| || || ||| ||| ||||| ||||| || Sbjct 355 GAACT-GGATGAGATGGCGCTGGCCCCGTGCCA---CGCGTTCTTCCAGTTCTACGTTGC 300 Query 45901 GAATGGCCGGTTGTCATGCATGTGGCAACAGCGTTCTGTCGATACATTTCTAGGATTGCC 45960 | | ||| | | || ||| | | ||||| || ||||| || || || |||| Sbjct 299 GGACGGCAAGCTCTCCTGCCAACTGTATCAGCGCTCCTGCGATATCTTCCTCGGCCTGCC 240 Query 45961 GTTTAACATCGCTAGCTATGCGCTGTTGACACATATGGTTGCCCAACAATGCGACCTCGA 46020 ||| || ||||| ||||| || || || |||||| | ||||| || |||||||| || Sbjct 239 GTTCAATATCGCCAGCTACGCTTTGCTGGTGCATATGATGGCCCAGCAGTGCGACCTGGA 180 Query 46021 TGTCGGCGAACTCATTTTCACCGGCGGCGACGTCCATTTGTACAAAAATCATCTGGAACA 46080 || || || | | | ||||| ||||| |||| |||||| || || ||||| || Sbjct 179 AGTGGGTGATTTTGTCTGGACCGGTGGCGATACCCATCTGTACAGCAACCACCTGGAGCA 120 Query 46081 AGCGAAACTGCAGCTGACGCGCGAGCCGCGCCCGCTGCCGAAGCTCGTGATCAAACGGAA 46140 || ||||||||||||||||| |||||| | ||||||||||| | ||||| || || Sbjct 119 GACGCGCCTGCAGCTGACGCGCGAACCGCGCGCCCTGCCGAAGCTGATTATCAAGCGCAA 60 Query 46141 GCCGCCGTCTATCTTTGACTAT 46162 |||| ||||||||| |||||| Sbjct 59 GCCGGAGTCTATCTTCGACTAT 38 >seq105800 Length=3879 Score = 141 bits (156), Expect = 3e-29 Identities = 184/253 (73%), Gaps = 1/253 (0%) Strand=Plus/Plus Query 45488 AAAGA-AGATCGGACGGGAACAGGCACATTGTCGGTGTTCGGCCGTCAGCTGCGCTTTAA 45546 ||||| |||||| ||||| |||||||| || || ||| ||| |||| ||| | Sbjct 2656 AAAGACAGATCGTACGGGCACAGGCACGCGCAGTGTATTTGGCTATCAAATGCGTTTTGA 2715 Query 45547 CTTGCAGGACGGATTCCCGCTCGTGACGACGAAAAAGTTGCATATCCGCTCGATCATTTA 45606 || | | || || ||| | || || || |||||||| ||||| || || || || | Sbjct 2716 TCTGAAAGCTGGCTTTCCGTTGGTCACCACCAAAAAGTTACATATGCGATCCATTATCCA 2775 Query 45607 TGAACTGCTCTGGTTTTTAAAAGGCGATACGAATGTTCGCTATTTGCAGGAGAATGGTGT 45666 |||||| ||||||| |||||||| || ||||| | |||||||| | || |||||||| Sbjct 2776 TGAACTAATCTGGTTCTTAAAAGGTGAGACGAACATCAGCTATTTGAAAGAAAATGGTGT 2835 Query 45667 GACGATTTGGGACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCAATCTACGGCGCGCA 45726 | |||||||| || ||||| ||||||||||| || | || || | || ||| | || Sbjct 2836 TAGCATTTGGGATGAATGGGCTGATGAAAACGGGAATTTAGGTCCGGTTTATGGCTCACA 2895 Query 45727 ATGGCGGTCGTGG 45739 |||||| || ||| Sbjct 2896 ATGGCGCTCTTGG 2908 >seq63939 Length=2243 Score = 129 bits (142), Expect = 2e-25 Identities = 211/303 (70%), Gaps = 2/303 (1%) Strand=Plus/Plus Query 45430 GAAAACTATGAAACAATATCTAGACTTGCTGCAAGACATCTTAGAAAACGGCGTGGAGAA 45489 ||||| |||||||| ||||| || || ||||| | | | | | ||| | || Sbjct 1895 GAAAA--ATGAAACAGTATCTGGATTTAATGCAACATGTGCTGCACGAAGGCACGCCAAA 1952 Query 45490 AGAAGATCGGACGGGAACAGGCACATTGTCGGTGTTCGGCCGTCAGCTGCGCTTTAACTT 45549 || || || || || || || || | || | || || | ||| |||| || ||| | Sbjct 1953 AGCTGACCGTACCGGCACCGGTACGCTTTCAATTTTTGGTCACCAGATGCGTTTCAACCT 2012 Query 45550 GCAGGACGGATTCCCGCTCGTGACGACGAAAAAGTTGCATATCCGCTCGATCATTTATGA 45609 |||||| || || ||||| || || || || || | |||||||||||||| ||| |||| Sbjct 2013 GCAGGATGGTTTTCCGCTGGTCACCACCAAGAAATGTCATATCCGCTCGATTATTCATGA 2072 Query 45610 ACTGCTCTGGTTTTTAAAAGGCGATACGAATGTTCGCTATTTGCAGGAGAATGGTGTGAC 45669 ||||| |||||| | ||||||||||| || | | ||| | | || || || | Sbjct 2073 GCTGCTGTGGTTTCTGAAAGGCGATACCAACATCGGTTATCTCAAAGAAAACAACGTCTC 2132 Query 45670 GATTTGGGACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCAATCTACGGCGCGCAATG 45729 || ||||| |||||||| ||||| || |||||||||||||| | || ||| || || Sbjct 2133 CATCTGGGATGAGTGGGCGGATGAGAATGGCGATCTCGGCCCGGTGTATGGCAAACAGTG 2192 Query 45730 GCG 45732 ||| Sbjct 2193 GCG 2195 >seq93888 Length=1140 Score = 114 bits (126), Expect = 4e-21 Identities = 268/400 (67%), Gaps = 16/400 (4%) Strand=Plus/Plus Query 45830 GCGTGGAACGTGGCAAAGTTGGGGGAAATGAAGTTGCCCCCATGTCATTACGCCTTT--- 45886 || ||||| || | | |||| | ||||| | || | || || ||| |||||| Sbjct 33 GCATGGAATGTTGGAGAGTTAGATAAAATGGCGCTGGCACCTTGCCAT---GCCTTTTTC 89 Query 45887 CAGTTTTACGTCGCGAATGGC-----CGGTTGTCATGCATGTGGCAACAGCGTTCTGTCG 45941 || || ||||||| ||||||| | |||| || || | | | ||||| ||| | Sbjct 90 CAATTCTACGTCGTGAATGGCAAACTCAGTTGCCA-GC-TCT---ATCAGCGCTCTTGTG 144 Query 45942 ATACATTTCTAGGATTGCCGTTTAACATCGCTAGCTATGCGCTGTTGACACATATGGTTG 46001 || ||| |||| || || ||||| ||||| ||||||||||| || |||||||| | Sbjct 145 ATGTCTTTTTAGGCTTACCCTTTAATATCGCCAGCTATGCGCTACTGGTCCATATGGTCG 204 Query 46002 CCCAACAATGCGACCTCGATGTCGGCGAACTCATTTTCACCGGCGGCGACGTCCATTTGT 46061 | || || || || ||||| |||||||| | ||| || || ||||| || | | Sbjct 205 CTCAGCAGTGTGATCTCGAAGTCGGCGATTTTGTTTGGACAGGGGGCGATACGCACCTCT 264 Query 46062 ACAAAAATCATCTGGAACAAGCGAAACTGCAGCTGACGCGCGAGCCGCGCCCGCTGCCGA 46121 | ||||| | ||||||||| | | || | | || ||||| || | ||||| | Sbjct 265 ATTCTAATCACTTAGAACAAGCGCACTTACAATTAAGTCGTGAGCCTCGTGCACTGCCTA 324 Query 46122 AGCTCGTGATCAAACGGAAGCCGCCGTCTATCTTTGACTATGAATACGAGGATTTTGAAT 46181 || | || || ||||| |||||| ||||| || || || | || ||||| || Sbjct 325 AGTTGGTCATTAAACGCAAGCCGGACTCTATTTTCGATTACTGTTTTGATGATTTCGAGA 384 Query 46182 TTGTCGGCTATGACCCGCACCCGGCGATTAAGGCTCCTGT 46221 | | ||||| || |||||||| ||||| || || || || Sbjct 385 TAGAAGGCTACGATCCGCACCCTGCGATCAAAGCGCCCGT 424 >seq2677 Length=2322 Score = 91.5 bits (100), Expect = 5e-14 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 45491 GAAGATCGGACGGGAACAGGCACATTGTCGGTGTTCGGCCGTCAGCTGCGCTTTAACTTG 45550 || || || || || || ||||| || || | ||||| | || ||||||| | || Sbjct 2091 GACGACCGTACCGGTACCGGCACCTTATCCATTTTCGGTCACCAAATGCGCTTCGATCTG 2150 Query 45551 CAGGACGGATTCCCGCTCGTGACGACGAAAAAGTTGCATATCCGCTCGATCATTTATGAA 45610 || | || ||||| | || || |||||||| | ||| | |||||||| ||| | || Sbjct 2151 CAACAGGGCTTCCCCTTAGTCACCACGAAAAAATGCCATCTGCGCTCGATTATTCACGAG 2210 Query 45611 CTGCTCTGGTTTTTAAAAGGCGATACGAATGTTCGC-TATTTGCAGGAGAATGGTGTGAC 45669 ||||| ||||||||||| || || || ||| |||| || | | ||||| || || Sbjct 2211 CTGCTGTGGTTTTTAAAGGGAGACACCAAT-ATCGCTTACCTAAAAGAGAACAAGGTAAC 2269 Query 45670 GATTTGGGACGAGTGGGCCGATGA 45693 ||||||||| || ||||| || || Sbjct 2270 GATTTGGGATGAATGGGCAGACGA 2293 >seq1414 Length=2481 Score = 89.7 bits (98), Expect = 2e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 45929 CAGCGTTCTGTCGATACATTTCTAGGATTGCCGTTTAACATCGCTAGCTATGCGCTGTTG 45988 || |||||| |||| |||||| || || || ||||| || ||||||||||| | | Sbjct 1635 CAACGTTCTTGCGATGTATTTCTTGGTTTACCCTTTAATATAGCTAGCTATGCAATACTT 1576 Query 45989 ACACATATGGTTGCCCAACAATGCGACCTCGATGTCGGCGAACTCATTTTCACCGGCGGC 46048 | ||||||| | || ||||||||| | ||| | || || ||| | | | || || || Sbjct 1575 ATACATATGATAGCTCAACAATGCAAACTCCAAGTTGGAGAATTTTTGTGGACAGGAGGA 1516 Query 46049 GACGTCCATTTGTACAAAAATCATCTGGAACAAGCGAAA 46087 || || ||||| || ||||||||| | ||| ||| ||| Sbjct 1515 GATGTTCATTTATATAAAAATCATATTGAATTAGCAAAA 1477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156815216289794