Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_019704.1 Length=44375 Score E Sequences producing significant alignments: (Bits) Value seq75855 147 6e-31 seq11972 145 2e-30 seq259146 136 1e-27 seq201909 116 1e-21 seq268578 105 2e-18 seq96581 100 8e-17 seq84525 100 8e-17 seq187742 89.7 1e-13 seq287938 87.8 5e-13 >seq75855 Length=31220 Score = 147 bits (162), Expect = 6e-31 Identities = 313/462 (68%), Gaps = 18/462 (4%) Strand=Plus/Plus Query 15908 GAGGTTATTGACGCCAAACTGCGTTATCCAAATACCGCGCTGCTGTACATCGAATTCGAC 15967 |||||||| ||| ||||||||||||||||||||| || || || || ||||| | || Sbjct 12493 GAGGTTATCGACAGCAAACTGCGTTATCCAAATACTGCTCTACTTTATGTCGAAGTGGAT 12552 Query 15968 TCAAGCCAGTTTAACGGCTCTATCCCGCAAATATCC--TGCGAACCGCGAGG---GCGTG 16022 || || ||||| ||| | | |||| ||| ||| | ||| ||| || | Sbjct 12553 GCATCGCAATTTAATGGCC--AGGCACCAAAGATCACATGCAAGCCGAAAGGCAAGCTGG 12610 Query 16023 TAATCCGCGTTCCGGATACGTATGACCCGGAGACCCGCACCTACAGCGGCACATGGACAG 16082 || ||||||||| | || || || | | | | || |||||||| || ||| | Sbjct 12611 TA---CGCGTTCCGACGAATTACGAACCTGTTAGCAGGACTTACAGCGGAACCTGGCTGG 12667 Query 16083 GGGCGTTTAAGTGGGCGTGGACGGATAATCCAGCCTGGATTTTTTACGATCTGGTGGTGA 16142 | | || || | || | || ||||||| || ||||||||||||||||||||| || Sbjct 12668 GCGACTTCAAATACGCTTACACCAATAATCCGGCATGGATTTTTTACGATCTGGTGCTGG 12727 Query 16143 GCGACCGCTTTGGGCTGGGCAATCGCCTGACGGCGGCCAATATTGATAAATGGACGCTTT 16202 | || ||| |||||| ||| | || ||| ||||| | ||| ||| | Sbjct 12728 ATAAAATCTGTGGTATGGGCACGCGCGTTGATGCCTCCATGATTGACAGGTGGGAGCTGT 12787 Query 16203 A-TCAGGTCGCGCAATATTGCGATCAGCCGGTTCCTGATGGTAAAGGCGGTAGCGGCACT 16261 | ||| ||||||| || |||||||| ||| || || |||| | |||||||| Sbjct 12788 ACTCAA-TCGCGCAGTACTGCGATCAAATGGTGCCA------AACGGCGCTGGCGGCACT 12840 Query 16262 GAGCCTCGCTATACCTGTAACGTGTACGTGCAGGAGAGGAATGACGCCTATACCGTGTTA 16321 ||||| |||| |||||| ||||||| | ||| | | || |||||||| || | Sbjct 12841 GAGCCGCGCTTTACCTGCAACGTGTTTATCCAGAGCCAGCAGGATGCCTATACAGTCCTG 12900 Query 16322 CGTGATTTTGCGGCGATATTCCGGGGCATGACGTACTGGGGT 16363 || |||||||||||||||| || || |||| ||||||| Sbjct 12901 AAGGACATTGCGGCGATATTCCGAGGAATCACGTTCTGGGGT 12942 Score = 109 bits (120), Expect = 2e-19 Identities = 166/233 (71%), Gaps = 5/233 (2%) Strand=Plus/Plus Query 21645 CCAACCACATATCGGACTCTTCAAACATTTCCTCCAGCAT-GCGGTTCAGTTTTTCCCGA 21703 ||| ||||||||| | |||||||||||| ||||| | || || | ||| ||| || | Sbjct 20454 CCAGCCACATATCAGCCTCTTCAAACATCTCCTCAATCACAGCAGC-CAGCTTTGCCTTA 20512 Query 21704 TCGCTTTTGCTGGCATCGCTGTTTAAGCCG---TTCGCCTGCATCGGCTTAACCTTCACT 21760 |||| ||| ||||||||| | || | || | || | |||||||||||||||||| Sbjct 20513 TCGCCTTTACTGGCATCGGTATTAATGCTGCTGTTAGTGACCATCGGCTTAACCTTCACC 20572 Query 21761 TCTGCATCCGGAAAGATCCGGTGCACTCGCTTTGTTAACTCATTCAGAATTATTTCTCTG 21820 || ||| ||||||| | ||||| |||||||| | ||| ||| || | || ||| Sbjct 20573 TCAGCAGCCGGAAACACACGGTGTACTCGCTTCTCCAGTTCAGCCAGGATCAGCTCCCTG 20632 Query 21821 GCACCTGTTAATCCTTCAACATTCCGTTTGTCGTACACCAACTCAACGAACAT 21873 || | ||| | | ||||| || |||||||| | | ||||||||||| Sbjct 20633 GCGTTCGGGAATTCGGCCACATTGCGCTTGTCGTAAATGAGTTCAACGAACAT 20685 >seq11972 Length=3077 Score = 145 bits (160), Expect = 2e-30 Identities = 145/188 (77%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 42583 ACCTGTGATCTGCCTGTTCCTGCTGACATTGCTGGTGGGCTGCTCGAATACGCGTACCGT 42642 ||||||| ||||||||| ||||||| || ||||| || ||||||| ||| || | ||| Sbjct 182 ACCTGTGCTCTGCCTGTGCCTGCTGCTATCGCTGGCCGGTTGCTCGACTACACGAATCGT 241 Query 42643 TTACGTTCCAGCGCAATGCACGCCGATACCGACGGACCTGACGCAGCCGATGATAGTACC 42702 ||||| ||||||||||||||||| || ||| | ||| | |||| ||| | ||||| Sbjct 242 CTACGTGCCAGCGCAATGCACGCCTATCCCGGCCTCGTTGATGAAGCCAATGCTGGTACC 301 Query 42703 GCTGCCGCCGGCTCAATAACGTACTGCCAGGCTGTGCTCTGGATTAAGCCGCTGCTGGCC 42762 ||||| ||||| | | || ||||||||||| ||||| |||||||| | ||| ||| | Sbjct 302 ACTGCCCCCGGCACCCTGACTTACTGCCAGGCGGTGCTGTGGATTAATCAGCTACTGACA 361 Query 42763 GTGATTGA 42770 || || || Sbjct 362 GTCATCGA 369 >seq259146 Length=2880 Score = 136 bits (150), Expect = 1e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 42583 ACCTGTGATCTGCCTGTTCCTGCTGACATTGCTGGTGGGCTGCTCGAATACGCGTACCGT 42642 ||||||| ||| |||||||||||| || ||||| |||||||||| ||| || || Sbjct 182 ACCTGTGCTCTCGCTGTTCCTGCTGCTATCGCTGGCAGGCTGCTCGACTACACGCTTAGT 241 Query 42643 TTACGTTCCAGCGCAATGCACGCCGATACCGACGGACCTGACGCAGCCGATGATAGTACC 42702 ||||||||||||||||||||||| || | | | ||| | |||| ||| | ||||| Sbjct 242 CTACGTTCCAGCGCAATGCACGCCTATCCGGGCCTCGTTGATGAAGCCAATGCTGGTACC 301 Query 42703 GCTGCCGCCGGCTCAATAACGTACTGCCAGGCTGTGCTCTGGATTAAGCCGCTGCTGGCC 42762 |||||| ||||| | | |||||||| ||||| || || |||||| | || |||| | Sbjct 302 GCTGCCCCCGGCCCCCTGACGTACTGTCAGGCGGTACTGTGGATTGACCCATTGCTAACG 361 Query 42763 GTGATTGAAAAGGGCAATAACAATTTCGCTGGAATTCG 42800 | |||||| ||| ||| | | | | ||||| || || Sbjct 362 GCGATTGACCAGGCCAACAGCCAACTGGCTGGCATCCG 399 >seq201909 Length=21394 Score = 116 bits (128), Expect = 1e-21 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 34902 GAGCAGGTGGCGCAGGTATTCAACAAGCTGTTCAACGAGCTGCGCGCCGCGTTCCCGGCC 34961 ||||||| || || | ||||| || |||||| ||||| | ||| |||||||| Sbjct 11625 GAGCAGGCCGCTCAAATCTTCAATGAGTTGTTCAGGCAGCTGAAGGGCGCTTTCCCGGCA 11566 Query 34962 AGCATGGCGAACTTCCGCACCCAGGAAGACCTGAACGAATTCCGCCGTCAGTGGCTGCTG 35021 ||||| | | || ||||| ||||| | ||||| | || || |||||| || || Sbjct 11565 CTGATGGCAAGCATCAAAACCCAAGAAGAGTTAAACGAGCTGCGGCGCCAGTGGGTGATG 11506 Query 35022 GCGTTTCAGGAGAACGGGATCCACACCATGGCTCAGGTCGATGCCGGCATGCGCATTGCC 35081 || ||| || ||||| || || || | ||||| | ||||| ||| |||||| Sbjct 11505 GCCTTTGCTGAAAACGGCATTACGACAATCGACCAGGTTAACGCCGGGATGAAGATTGCC 11446 Query 35082 CGCCGCCAGGAGCGCCCATTCCTGCCGTCGCCGGGCCAGTTCGTCGCCTGGTGC 35135 |||| ||||| || ||||| |||||||||||||| ||||||||||||||| Sbjct 11445 CGCCAGCAGGAAACGCCTTTCCTCCCGTCGCCGGGCCAATTCGTCGCCTGGTGC 11392 Score = 80.6 bits (88), Expect = 8e-11 Identities = 134/194 (69%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 38628 ATGGCAAATTTACGCAAAGAGGCTCGTGGTCGTGATTGTCAGGTTCGAATTCCCGGCGTC 38687 |||| |||||||| ||||| || || || | || || ||||| | | || || || Sbjct 7164 ATGGGTAATTTACGAAAAGAAGCGCGGGGCAGGGAATGCCAGGTCAGGCTGCCAGGTATC 7105 Query 38688 TGCAACGGTAACCCGGAAACGTCTGTACTGGCGCACATTCGCCTGGCCGGGTTATGTGGC 38747 ||||| || || | |||||| ||||| |||||| || ||| || | ||||| Sbjct 7104 TGCAATGGCAATTCTGAAACGGTCGTACTCGCGCACTACCGGATGGTAGGCATCTGTGGA 7045 Query 38748 ACCGGAATCAAACCGCCTGATCTGATTGCCACCATTGCATGCTCTGCCTGTCACGACGAG 38807 || ||||| ||||| ||| || | | | | || |||||| ||| ||||| ||| Sbjct 7044 ACTGGAATGAAACCTGATGACCTTTTCGGCGCATGGGCGTGCTCTCGCTGCCACGATGAG 6985 Query 38808 ATCGACCGCCGTAC 38821 || ||||||||||| Sbjct 6984 ATAGACCGCCGTAC 6971 >seq268578 Length=8781 Score = 105 bits (116), Expect = 2e-18 Identities = 143/198 (72%), Gaps = 21/198 (11%) Strand=Plus/Plus Query 40441 TGCGGTCCCGAGTCTCCATGAG--AGCCAGATGCAGGTACGAACTGCAACACACACTGGT 40498 ||| | ||||||| || |||| ||||||| |||||| |||||||| |||||| ||||| Sbjct 7569 TGCTGCCCCGAGTTCCCGTGAGGAAGCCAGACGCAGGTCCGAACTGCGACACACGCTGGT 7628 Query 40499 TAGGGTTAATAAAGAAG-AGGTGTGCCGGTACTCCAGAACGATCGCCAATCGTTCTCCGG 40557 |||||||||||||||| ||||||||||| | ||| ||| |||| ||| |||| Sbjct 7629 GAGGGTTAATAAAGAAGAAGGTGTGCCGGCAGAGCAGTGCGACGGCCAGTCGCATACCGG 7688 Query 40558 TTAGAGGTGAGGGATTCATGAGATACCCCTGACTAC--GGTCTCAAAGGCATGAGCG-CG 40614 || || || || ||| | || | ||||| |||||||||| || Sbjct 7689 TT---------------ATCAGCGGCCACTGGCGACAGAGACTCAAGGGCATGAGCGCCG 7733 Query 40615 GCCACTGCGAGAGTGTGG 40632 |||||||||| ||||||| Sbjct 7734 GCCACTGCGAAAGTGTGG 7751 >seq96581 Length=12327 Score = 100 bits (110), Expect = 8e-17 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 22258 CGCACACGGGCGATGCGCGGGTAGATATGATTAATGCTGTTATTGTGTTGCTCGGCGCTG 22317 || || ||||| ||||||||| | || | | |||| | ||| ||||| || | Sbjct 4912 CGAACGCGGGCAATGCGCGGGAAAATCCACTCGAAGCTGGCCTGGTGCTGCTCTGCCGTC 4971 Query 22318 GCGGCACTACAGGCGTCTTCGGCAATCACCAGATTAAAGCCAAGTTCCCAGGCATTGCGG 22377 || | || ||| ||||| ||||||||||| || ||||| || |||||||| || || Sbjct 4972 GCCGTGCTGCAGATATCTTCCGCAATCACCAGGTTGAAGCCCAGCTCCCAGGCGTTACGC 5031 Query 22378 GCGGTGGATTCAACACCGATATTGGTCGAGATCCCACATAACACAATTGTATCGATACCT 22437 ||||| ||||| |||||||| ||||| | || || | | ||||| || ||||| || Sbjct 5032 GCGGTAGATTCCACACCGATGTTGGTGGCAATGCCGCCCAGAACAATCGTGTCGATGCCG 5091 Query 22438 CGGCGGCG 22445 ||||| || Sbjct 5092 CGGCGACG 5099 >seq84525 Length=6380 Score = 100 bits (110), Expect = 8e-17 Identities = 166/239 (69%), Gaps = 3/239 (1%) Strand=Plus/Minus Query 18520 CAATGCAAAAATTGGCAATTACATCCAGTCGAACAATTATGTTGCCGGCTCTGTTGGCTG 18579 |||||||||||| || |||| ||||||||| ||||| ||||| || || || ||| || Sbjct 3644 CAATGCAAAAATAGGTAATTTCATCCAGTCAAACAACTATGTCGCTGGGTCGACTGGTTG 3585 Query 18580 GAAACTGGATAAGTCCGGGACGTTTGAGAACTACGGTTCGACAGCTGGGGAGGGAGCCAT 18639 | | || | || | || || |||| |||||||| || || ||||| || || Sbjct 3584 GCAGCTAAACAAAGCTGGAACATTTGTAAACTACGGCTCTGTGGCCGGGGAAGGCAAGAT 3525 Query 18640 GAAGCAGACCAACCAGACAATCAGCGTCAAGGATGGCAACAACGTTCTGAGAGTGCAGGT 18699 ||||||| ||| | || |||||||| || |||||| ||||| | || ||| | Sbjct 3524 GAAGCAGGACAATAACACCATCAGCGTTGCTGACGGCAACGGAGTTCTTCGGGTCCAGAT 3465 Query 18700 TGGCCGATTAACGGGGGTGTTCTGATATGGCT---TATGGAATACAGACCTGGGATGCT 18755 | || | |||||||| |||| | |||||| | || ||| || ||||||||| Sbjct 3464 GTGTCGTATTACGGGGGTATTCTAAGATGGCTGAATGGGGCATAGCTACTTGGGATGCT 3406 >seq187742 Length=2667 Score = 89.7 bits (98), Expect = 1e-13 Identities = 160/233 (69%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 18526 AAAAATTGGCAATTACATCCAGTCGAACAATTATGTTGCCGGCTCTGTTGGCTGGAAACT 18585 |||||| || | | || ||||| ||||| ||||||||||| || ||| ||| |||| Sbjct 2397 AAAAATCGGACAGTTTATACAGTCAAACAACTATGTTGCCGGGTCAACTGGTTGGCAACT 2456 Query 18586 GGATAAGTCCGGGACGTTTGAGAACTACGGTTCGACAGCTGGGGAGGGAGCCATGAAGCA 18645 | || | || || |||| |||||||| | || ||||| ||| |||||||| Sbjct 2457 AAACAAAGCTGGAACATTTGTAAACTACGGGGCTGTGGCCGGGGAAGGAAAGATGAAGCA 2516 Query 18646 GACCAACCAGACAATCAGCGTCAAGGATGGCAACAACGTTCTGAGAGTGCAGGTTGGCCG 18705 | ||| | || |||||||| || || ||| ||||| | || ||| |||| || Sbjct 2517 GGACAATAACACCATCAGCGTTGCCGACGGTAACGGAGTTCTTCGGGTCCAGATTGGTCG 2576 Query 18706 ATTAACGGGGGTGTTCTGATATGGCT---TATGGAATACAGACCTGGGATGCT 18755 | |||||||| |||| | |||||| | || ||| || ||||||||| Sbjct 2577 TATTACGGGGGTATTCTAAGATGGCTGAATGGGGCATAGCTACTTGGGATGCT 2629 >seq287938 Length=17746 Score = 87.8 bits (96), Expect = 5e-13 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 21638 TCTGAAACCAACCACATATCGGACTCTTCAAACATTTCCTCCAGCATGCGGTTCAGTTTT 21697 || || |||| |||| ||||| || |||||||| || || | ||||| ||| | Sbjct 3669 TCAGACACCATCCACTGATCGGCTTCCTCAAACATCTCTTCAATAATGCGTAACAGCGTG 3610 Query 21698 TCCCGATCGCTTTTGCTGGCATCGCTGTTTAAGCCGTTCGCCTGCATCGGCTTAACCTTC 21757 | ||||||||| ||||| || || || | |||||| ||||||||||| || ||||| Sbjct 3609 GACTTATCGCTTTTACTGGCGTCACTTTTCACGCCGTTGGCCTGCATCGGTTTTACCTTG 3550 Query 21758 ACTTCTGCATCCGGAAAGATCCGGTGCACTCGCTTT 21793 || ||||| ||||| | || ||||| |||||| Sbjct 3549 ACCAGCGCATCGGGAAACACACGCTGCACGCGCTTT 3514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141037309463874