Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_019709.1 Length=41567 Score E Sequences producing significant alignments: (Bits) Value seq485613 365 1e-96 seq201909 138 3e-28 seq207983 123 7e-24 seq79893 123 7e-24 >seq485613 Length=553 Score = 365 bits (404), Expect = 1e-96 Identities = 289/347 (83%), Gaps = 0/347 (0%) Strand=Plus/Plus Query 32003 GGAGCGAAGAGTGGCTGATATCGATGATGGTTACACCAGATTCGCTAACGAGCTGCTGGA 32062 |||||| |||||| |||| |||| |||| || |||||| |||||||||| || ||||| Sbjct 81 GGAGCGTCGAGTGGTCGATACCGATAATGGATATACCAGAATCGCTAACGAACTACTGGA 140 Query 32063 AGCTATCGCAAGTGCCGATTTAACCGCTCGCCAGTTGAAAGTTATGCTGGCCTACGTCCG 32122 |||||||||||||||||||||||||||| | ||||| ||| | ||||||||||||||| | Sbjct 141 AGCTATCGCAAGTGCCGATTTAACCGCTAGACAGTTAAAACTCATGCTGGCCTACGTCAG 200 Query 32123 GAAAACATATGGATTCAATAAGAAAACAGATCGAATAGCCGATGAGCAAATTTCTCAGTT 32182 ||||| ||||| ||||| ||||||| |||||||| ||||| |||||||| |||||||| Sbjct 201 AAAAACTTATGGGTTCAACAAGAAAATGGATCGAATTGCCGACGAGCAAATATCTCAGTT 260 Query 32183 AACAGGACTGTCAAGGCAGAATGTTAACAAGGCTAAAAAAGAACTGATTTCAATGAATTG 32242 |||||| || || |||||||| ||||| ||||| ||||||||||| ||||||||||||| Sbjct 261 AACAGGCCTCTCTAGGCAGAACGTTAATAAGGCAAAAAAAGAACTAGTTTCAATGAATTG 320 Query 32243 CCTGTTTATGGATGGAAATCAAATCGGTGTAAACAGGGAGGTATCTGCGTGGCAATTCAG 32302 ||| | | || || | ||||||||| | |||| ||||| || ||||||| ||||| Sbjct 321 TCTGATAGTTGAAGGGAGTCAAATCGGGATTAACAAAGAGGTTTCGGCGTGGCGTTTCAG 380 Query 32303 CAAGTGTCTCCAAGTTAGCAACTTTGTCTCGAAGTTAGAGACaaaaa 32349 ||||||||||||||||| || |||||||| || ||||||||||| Sbjct 381 TAAGTGTCTCCAAGTTAGTAATTTTGTCTCTAAACCAGAGACAAAAA 427 >seq201909 Length=21394 Score = 138 bits (152), Expect = 3e-28 Identities = 148/196 (76%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 35737 TAATGGCTAACCTACGCAAAGAAGCACGCGGCAGAGAATGTCAGGTACGTATTTACGGCG 35796 |||||| ||| |||| |||||||| || ||||| ||||| ||||| | | || Sbjct 7166 TAATGGGTAATTTACGAAAAGAAGCGCGGGGCAGGGAATGCCAGGTCAGGCTGCCAGGTA 7107 Query 35797 TATGCAATGGCAATCCTGAAACTACAGTTCTGGCACATTACCGGATGGCTGGAATTTGCG 35856 | |||||||||||| ||||||| || || || || |||||||||| || || || | Sbjct 7106 TCTGCAATGGCAATTCTGAAACGGTCGTACTCGCGCACTACCGGATGGTAGGCATCTGTG 7047 Query 35857 GAACGGGAATGAAACCTGACGACCTGATCGGCGCATGGGCTTGTAGTGACTGCCACGCGG 35916 |||| |||||||||||||| ||||| ||||||||||||| || | |||||||| | Sbjct 7046 GAACTGGAATGAAACCTGATGACCTTTTCGGCGCATGGGCGTGCTCTCGCTGCCACGATG 6987 Query 35917 AGATCGACCGGCGCAC 35932 |||| ||||| || || Sbjct 6986 AGATAGACCGCCGTAC 6971 >seq207983 Length=7775 Score = 123 bits (136), Expect = 7e-24 Identities = 110/138 (80%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 40457 GAGCTGCTGACATTCTGCGTTCTGGTGCTGAAGAATGGCTTTACGGTCACCGGGGAAAGC 40516 || |||||||| |||||||||||||| ||| || ||||| || |||||||| || Sbjct 7488 GATCTGCTGACCTTCTGCGTTCTGGTCCTGCGCAACGGCTTCACCGTCACCGGCGAGTCG 7547 Query 40517 GCCTGCGCCAGCCCAGAGAACTTCGATGAAGAAATCGGGCGCAAGATTGCTCGCCAGAAT 40576 |||||||||||||| ||||||||||||| || ||||| |||||||| || |||||||| Sbjct 7548 GCCTGCGCCAGCCCCGAGAACTTCGATGCCGAGATCGGTCGCAAGATCGCGCGCCAGAAC 7607 Query 40577 GCTGTAAACAAAATCTGG 40594 || || ||| ||||| Sbjct 7608 GCGGTTGCCAAGGTCTGG 7625 >seq79893 Length=11432 Score = 123 bits (136), Expect = 7e-24 Identities = 308/468 (66%), Gaps = 6/468 (1%) Strand=Plus/Plus Query 15082 GAGGTGATTGACGCCAAACTGCGCTACCCGAACACCGCGCTGCTCTACGTCGAATTCGAC 15141 |||||| | ||| ||||||||| |||||||| || || |||||||||||||| || || Sbjct 8753 GAGGTGGTCGACAGCAAACTGCGTTACCCGAATACAGCACTGCTCTACGTCGAGTTTGAT 8812 Query 15142 TCAAGCCAGTTCAACGGCTCTATTCCTCAAATTTCATGCGAACCGCGCGGCCGCGTTATC 15201 | |||||| |||||| | ||| || || | ||| || |||||| || Sbjct 8813 GCCGCCCAGTTTAACGGCAATGCACCTAAAGTTACCTGCAGGCCAAAAGGCCGCAGGATT 8872 Query 15202 CGCGTTCCAGATACCTACGACCCTGAAACCCGCACTTATAGCGGTACATGGACCGGTGCG 15261 || || || | |||| |||| | ||||| |||| ||| | ||| ||| Sbjct 8873 CGGGTGCCGTCGAACTACAACCCCGTCACCCGGGAGTATACCGGCGCGTGGGACGGCAAT 8932 Query 15262 TTTAAGTGGGCATGGACGGATAACCCTGCGTGGATTTTTTACGACCTGGTTGTTTCTGAC 15321 ||| |||||| | | |||||||||| ||||||||||| |||||||| | | | Sbjct 8933 TTTGTGTGGGCGTTCAGTAATAACCCTGCATGGATTTTTTATGACCTGGTGCTGAATAAA 8992 Query 15322 CGGTTCGGCCTTGGGCACCGTTTGACCGCTGCGAATATTGATAAATGGACGCTTTATCAG 15381 ||||| | || ||||| | || | | ||||| || ||| ||| ||| Sbjct 8993 ATTTTCGGAATGGGAAACCGTGTCGATGCCTCCATGATTGACAAGTGGGAGCTATATTCC 9052 Query 15382 GTTGCTCAGTATTGTGATCAGATGGTACCAGACGGCAAAGGGGGCAACGGTACAGAACCA 15441 | || || || ||| | | |||| | ||||| || |||||| ||||| Sbjct 9053 ATCGCAGCTTACTGCGATGAAAAGGTATCTAACGGCGCTGG------CGGTACTGAACCG 9106 Query 15442 CGTTATACCTGCAACGTGTACATTCAGGACCGGAACGACGCCTACACAGTCCTGCGTGAT 15501 |||| |||||| ||||| || || ||| || | | ||||| || | || ||| ||| Sbjct 9107 CGTTTTACCTGTAACGTTTATATCCAGAGCCAGCAGGACGCGTATAACGTTCTGAAGGAT 9166 Query 15502 TTTGCCGCTATCTTCCGTGGCATGACCTACTGGGGCGGGGATCAGATT 15549 | || || |||||||| || || |||| |||||| |||||||| Sbjct 9167 ATCGCAGCAATCTTCCGGGGAATTACCTTCTGGGGGAATAATCAGATT 9214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132104978341458