Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_019711.1 Length=47288 Score E Sequences producing significant alignments: (Bits) Value seq267339 462 7e-126 seq150516 210 7e-50 seq79056 197 4e-46 seq201909 138 3e-28 >seq267339 Length=750 Score = 462 bits (512), Expect = 7e-126 Identities = 551/741 (74%), Gaps = 5/741 (1%) Strand=Plus/Minus Query 32317 AGTGCTGCTTCTTCGTTATAAGTAAAAATCACGTTGCTCATGCGGCGTTTTCCTTAATTT 32376 || |||||||||| ||| || | |||||||| | |||||||| || |||||||| | Sbjct 750 AGAGCTGCTTCTTTGTTGTAGGAGAAAATCACTTGGCTCATGCTGCTGATTCCTTAAGGT 691 Query 32377 GATGAACATTATTGATGCCGTAGTAATCACAAACAGTGGCATCGACGAAAGAGAGATCGT 32436 ||| || || | | || |||| || |||| || ||| |||| | || |||| Sbjct 690 TATGGACGTTGCTTAATCCCCAGTATTCGCAAATTGTTTTATCTACGAGTGCTAGGTCGT 631 Query 32437 TATCAATCTCATTGGAGTCAAACATTCCCATTGGGGATTTAACAGTGTCTGCACCGTTGT 32496 |||| || || || | |||||||||||||| ||||| ||||| || ||||||||||||| Sbjct 630 TATCGATTTCGTTTGTTTCAAACATTCCCATGGGGGACTTAACGGTATCTGCACCGTTGT 571 Query 32497 TTTTTGTGGTGAAAAAGAACTGGTCATCACGGGTAAGGGTGCGAAGAACTATAGTAAACA 32556 |||| |||||||| |||||||| ||||| ||||| | ||| || || || | |||||||| Sbjct 570 TTTTGGTGGTGAAGAAGAACTGCTCATCGCGGGTTAAGGTTCGGAGGACGACAGTAAACA 511 Query 32557 TGCCTTCGACAGTGATTTTCTCGTCCAGCATTTTGCCGATAGTTTTCATTTTCACGCGCC 32616 | |||||||| ||||| || || || ||||| |||||||||||||||| || || | | Sbjct 510 TCCCTTCGACCGTGATCTTTTCATCAAGCATCCTGCCGATAGTTTTCATCTTAACTCTAC 451 Query 32617 CCATAGGGGTTTCTTCGGTGTGTGCAAGAAAATAGACTCTCAGGTCATCAGGTGCATCCT 32676 |||| | ||||||||||| || || | || || || | || || || || ||||||| Sbjct 450 CCATTTGTGTTTCTTCGGTATGGGCTAAGAAGTAAACACGAAGCTCGTCTGGCGCATCCT 391 Query 32677 GTGCAGCCTTAATCACCTCCCATGCGTGGCGGCCTATCTCAGTAAATTTATCAAACGATT 32736 | || |||||||| | ||||||||||| ||||||||||| || |||||||| || || | Sbjct 390 GAGCTGCCTTAATGATGTCCCATGCGTGACGGCCTATCTCGGTGAATTTATCGAATGACT 331 Query 32737 TTTCTTCTGAGCGGCGCATAAACTCATTGCTCATCACATACTGGAAGTCATCAACAATAA 32796 | ||||||||||||||||||||||| || ||||||||||||||||||||||||| ||| | Sbjct 330 TCTCTTCTGAGCGGCGCATAAACTCGTTACTCATCACATACTGGAAGTCATCAATAATTA 271 Query 32797 CGATTCTTTTCCCGTA-TTCGTGAGCACGCTTAATTACGGCAACTATTACGTCCCATTTG 32855 |||||| || ||||| ||| | || | | ||| || || ||| |||| Sbjct 270 CGATTCGCTTTCCGTAGTTCAT-CGCCCCTTCAATCACTTTTACGATTGAAGAGGATTTA 212 Query 32856 TCAGTGGTAACTACGGT-TCCtttttttGCTCTGGCATCCCATGCCAGCCATTCTTTTGA 32914 || || | || || || || | || | ||| | ||||| | ||||| || || Sbjct 211 TCGGTTGATACCACAGTACCCGTCTTATTCTC-AGTGTCCCACTTAACCCATTTATTCGA 153 Query 32915 TTTAAAAGGTAGCGGCTTGCCTATTGGTTTTATAAGTATTGCTTCCTCTGGATTGATATT 32974 |||||| || || ||||| || | || || || || || | |||| ||| || Sbjct 152 TTTAAAGGGGAGTGGCTTACCAACCGGACGAATCAGGATCGCCTGAGTCGGATCGATGTT 93 Query 32975 TCTCATGCTGGTTGATTTTCCGGTGCCAGATTCACCGAGTATTAATGTCGCAGTTCCCAT 33034 ||||| |||||||||||| || || || |||||||| || |||||||| || || ||||| Sbjct 92 TCTCAGGCTGGTTGATTTACCAGTTCCTGATTCACCTAGAATTAATGTTGCTGTACCCAT 33 Query 33035 AATTTGCCTCAGAATGGTAAT 33055 | ||||||||||||||| Sbjct 32 -GCTGACCTCAGAATGGTAAT 13 >seq150516 Length=8092 Score = 210 bits (232), Expect = 7e-50 Identities = 225/295 (76%), Gaps = 8/295 (3%) Strand=Plus/Minus Query 42056 AGGGGAAGA--CGATGGGCATAAGAGAACTAAACCTCACCAAAGAACAGCAGGAGTGGCT 42113 ||||||||| ||||| ||||| | || || || || | ||||| ||| | || ||||| Sbjct 5791 AGGGGAAGAAGCGATGAGCATACGCGAGCTTAATCTATCGAAAGACCAGTACGACTGGCT 5732 Query 42114 GAATGGCTGGCTTGAACTGTGGGGCGCATGGGTTTATTCAGGTCGTCTTGAAAAGCGCAT 42173 |||| | ||||| || ||||||||||||||||||| || | || || ||||| || Sbjct 5731 GAATAGTTGGCTGGAGTTGTGGGGCGCATGGGTTTACAGCGGCAGGCTGGAGAAGCGAAT 5672 Query 42174 GAGCAGCGTAATAGCGAAGTTCATGGAGAGCGTAGAGCCGGGAAGAGTTATGACAAGGC- 42232 ||||||| | || || ||| ||||| ||||| || || | || ||| | || | Sbjct 5671 GAGCAGCATGATCGCTCAGTGGATGGAAAGCGTTGAACCCAGCGGA---ATGCCTAGTCG 5615 Query 42233 --CAATGTGCAACGATGATGATGGAATGTTGATTTCTCAGGTCGTCGATTCCGTCATGTA 42290 | |||||||| || ||||| ||||||||||||||||||||||| |||||||| |||| Sbjct 5614 CCCGATGTGCAATGACGATGACGGAATGTTGATTTCTCAGGTCGTAGATTCCGTTATGTG 5555 Query 42291 CATTGACAAGAAAGCCTTTGGCATCCTCCTCAGCTACTACGCTCATGGTTCATCT 42345 ||||||||| ||||| ||||||||||| || || || ||| |||| || ||| || Sbjct 5554 CATTGACAAAAAAGCGTTTGGCATCCTGCTGAGTTATTACTCTCACGGATCAACT 5500 >seq79056 Length=2380 Score = 197 bits (218), Expect = 4e-46 Identities = 373/531 (70%), Gaps = 26/531 (5%) Strand=Plus/Plus Query 42091 ACCAAAGAACAGCAGGAGTGGCTGAATGGCTGGCTTGAACTGTGGGGCGCATGGGTTTAT 42150 |||||||| |||||||| ||| | | ||||| || | ||||| |||||||| ||| Sbjct 5 ACCAAAGAGCAGCAGGATTGGATTGAGCAATGGCTAGAGTTATGGGGGGCATGGGTATAT 64 Query 42151 TCAGGTCGTCTTGAAAAGCGCATGAGCAGCGTAATAGCGAAGTTCATGGAGAGCGTAGAG 42210 |||||||| | |||||||| ||||||||| | ||||| ||| ||||| || |||||| Sbjct 65 TCAGGTCGCTTAGAAAAGCGTATGAGCAGCATGATAGCCCAGTGGATGGAAAGTGTAGAG 124 Query 42211 CCGGGAAG-AGTTAT--GACAAGGCCAATGTGCAACGATGATGATGGAATGTTGATTTCT 42267 || ||| ||||| ||||||||| ||||| || |||||||| ||||||||||||||| Sbjct 125 CC---AAGCGGTTATCCGACAAGGCCCATGTGTAATGATGATGACGGAATGTTGATTTCT 181 Query 42268 CAGGTCGTCGATTCCGTCATGTACATTGA--CAAGAAAGCCTTTGGCATCCTCCTCAGCT 42325 |||||||| |||||||| | | |||| ||| | | || || || | | | Sbjct 182 CAGGTCGTAGATTCCGTGCTCAAAGTTGATCCAACTA--CTTTGGGGATATTGATGGCTT 239 Query 42326 ACTACGCTCA-TGGTTCATCTAAGCGAGCAATTGCATCCTACTA-TCACGCGACTGCAAA 42383 | |||| ||| | ||| ||| ||||||| ||| | ||||| | ||| ||||||| Sbjct 240 ATTACG-TCACCAATAAATCCAAGAGAGCAATAGCAGCTTACTACTATCGC-TCTGCAAA 297 Query 42384 GCCACGCAAGATGTGT---GGACGTGGTGGCGAGGGATGGAGAAAACCTTCACTGGCAAC 42440 ||||||||||| | | || | || || || ||||| | || ||| || ||| Sbjct 298 ACCACGCAAGATATCTAAGGGGAGACTAGGTGAAGGTTGGAGGAGGCCATCAGAGGAAAC 357 Query 42441 CTGTAGAAACGAAATTGACGACATCCTGAAAGC--GTCGTTATTTG-TTTTGTACCAGCC 42497 || || ||| || ||| | ||||||| ||| || || | || | | || Sbjct 358 GCTAAGGAAAGAAGTTAGCGAAAGGTTGAAAGCAAGTCAGTACATGATCTTCTTC---CC 414 Query 42498 AATGCAAAATGCTTTCAAAATGCGTAAACGTGTTG-AGAAAGTTAAGCATGTTGCTGTTA 42556 | ||||||| | |||||||| ||| || | |||||||||||| || | | | Sbjct 415 TCTAGAAAATGCCATGAAAATGCG-AAAGATGAAGCCTAAAGTTAAGCATATT-CAGGAA 472 Query 42557 AAATCCTTGACATGCAATTATCCATTTAGCCATAATATTCACATATGCTGC 42607 || | ||||||||| | || | ||||| ||||||||| |||||| ||||| Sbjct 473 AATTGCTTGACATGGTAATACCTATTTACCCATAATATACACATAAGCTGC 523 >seq201909 Length=21394 Score = 138 bits (152), Expect = 3e-28 Identities = 148/196 (76%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 41234 TAATGGCTAACCTACGCAAAGAAGCACGCGGCAGAGAATGTCAGGTACGTATTTACGGCG 41293 |||||| ||| |||| |||||||| || ||||| ||||| ||||| | | || Sbjct 7166 TAATGGGTAATTTACGAAAAGAAGCGCGGGGCAGGGAATGCCAGGTCAGGCTGCCAGGTA 7107 Query 41294 TATGCAATGGCAATCCTGAAACTACAGTTCTGGCACATTACCGGATGGCTGGAATTTGCG 41353 | |||||||||||| ||||||| || || || || |||||||||| || || || | Sbjct 7106 TCTGCAATGGCAATTCTGAAACGGTCGTACTCGCGCACTACCGGATGGTAGGCATCTGTG 7047 Query 41354 GAACGGGAATGAAACCTGACGACCTGATCGGCGCATGGGCTTGTAGTGACTGCCACGCGG 41413 |||| |||||||||||||| ||||| ||||||||||||| || | |||||||| | Sbjct 7046 GAACTGGAATGAAACCTGATGACCTTTTCGGCGCATGGGCGTGCTCTCGCTGCCACGATG 6987 Query 41414 AGATCGACCGGCGCAC 41429 |||| ||||| || || Sbjct 6986 AGATAGACCGCCGTAC 6971 Score = 86.0 bits (94), Expect = 2e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 44718 TGACATGCAGATGCGTCAGCGTGATGTTGCTGCGCTCGATGCAAAATACACGAAGGAGTT 44777 ||| ||||||| || ||||| ||||||||||| || || || || ||||| |||||||| Sbjct 4116 TGATATGCAGACACGCCAGCGCGATGTTGCTGCTCTGGACGCCAAGTACACAAAGGAGTT 4057 Query 44778 AGCTGATGCTAAAGCTGAAAATGATGCTCTGC 44809 ||| ||||| ||||||||| | |||| ||| Sbjct 4056 AGCCGATGCACAAGCTGAAACTACTGCTTTGC 4025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150303648694500