Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_019714.1 Length=39026 Score E Sequences producing significant alignments: (Bits) Value seq196645 194 4e-45 seq201909 149 2e-31 seq123396 105 2e-18 seq79893 105 2e-18 seq75855 93.3 1e-14 seq153530 89.7 1e-13 >seq196645 Length=3446 Score = 194 bits (214), Expect = 4e-45 Identities = 281/395 (71%), Gaps = 4/395 (1%) Strand=Plus/Minus Query 24407 CTGATGTTTATGCTCGTCTGTATCTGCATCTTTCGCATCATCTATGCCGAACAAACCATT 24466 ||| || | | |||| ||||| || ||||| || | ||||| || | |||| | |||| Sbjct 3365 CTGGTGATGAAGCTCATCTGTGTCAGCATCCTTTGAGTCATCAATATCAAACAGAACATT 3306 Query 24467 GAGGCAATACTTGCGTGCATAAGAGCTTGTAGCTCCCGTAACTTGTGCAGAATCCATTCC 24526 || |||||||| | |||||| || || || || || ||||| || || || |||||||| Sbjct 3305 AAGACAATACTTCCTTGCATACGAACTAGTTGCCCCAGTAACCTGAGCCGAGTCCATTCC 3246 Query 24527 TTTCTTGCTTTCTTCCTCTCGTGCAAGAGCGGTTGCCGTATGACTGTT--TTCGCCATCG 24584 |||||||| || || || | ||| | || | |||||||| |||| ||| || || Sbjct 3245 CTTCTTGCTCTCCTCTTCCCTTGCCAAGGCACTCGCCGTATG--TGTTGATTCACCGTCT 3188 Query 24585 GTAATAGTTGCCGTGGCTTTCACGTAATACCGATCACCAATCAACACAACTTCATCGCTG 24644 ||||| ||||| || | || || || ||| || |||| |||||||| || Sbjct 3187 GTAATCGTTGCTACAGCCCTGACATAGTAACGACTCCCTATCATTACAACTTCGTCAGAT 3128 Query 24645 ATTGATAAAAACAGGCCATTCAGCAGCGGCTTAACACCCTCAAGAATGTCTTCGCAGCTT 24704 || | || || || || || || || ||||| ||||| | ||| ||||| ||| | Sbjct 3127 ATACTCAGGAAGAGACCGTTAAGAAGAGGTTTAACCCCCTCCAAAATATCTTCACAGATA 3068 Query 24705 CTGTATTTATATTTGCCGAATGAGTTGTATTGATTCTTTGGCGCGTTCAGATTCTCCTGA 24764 | |||||||| || ||||| |||||| || |||||||| ||||| || | |||| Sbjct 3067 CGATATTTATACTTACCGAAAATGTTGTACTGGTTCTTTGGTGCGTTAAGTGTTCGCTGA 3008 Query 24765 ATAGCTGCCAGTCTTGCGTAAAATTCTTTGCTCAT 24799 || |||| || |||||||||||||||| ||||| Sbjct 3007 ATCTCTGCTAGCTTTGCGTAAAATTCTTTACTCAT 2973 >seq201909 Length=21394 Score = 149 bits (164), Expect = 2e-31 Identities = 258/375 (69%), Gaps = 0/375 (0%) Strand=Plus/Minus Query 27604 TTCCACGACAACACCGATAATCTTGCAGTTCCCGTTGATAGGAGTCATAGGCCATGAAGG 27663 |||||| | |||||||||||||||||||| |||||||||||| |||||||||| || Sbjct 14764 TTCCACAGCCACACCGATAATCTTGCAGTTACCGTTGATAGGAACCATAGGCCATTGCGG 14705 Query 27664 ATTCAGGCCTTTCAGGTACTTCTGACCGCCATCTATAACCAGTTTCTTGAATGTTGCTTC 27723 || || || || ||||||||||| ||||| || |||| ||| ||| || || || || Sbjct 14704 GTTAAGCCCCTTGAGGTACTTCTGTCCGCCGTCGATAATCAGGCGCTTAAAGGTGGCCTC 14645 Query 27724 GTTCGCGTCAGTCAGTTTGGCTACAACAAGGCTTCCATTCACTGGCTCGCGTCCAGTATC 27783 ||| | ||| | || || |||| || ||||| || | | || | || ||||| Sbjct 14644 GTTTGAGTCCGAAAGCTTCGCTATCACTAGGCTGTTGTTGATCGCATCTCTGCCGGTATC 14585 Query 27784 TACTAACACCATATGACCTTCAGGGATGCTTTGACCTACAGGTGAGGTCATGGAATCACC 27843 | | ||| | |||||||| || ||| | || |||| | ||||| |||||||| Sbjct 14584 AAAAAGCACAAACGTGCCTTCAGGTATACTTGGCCCAGCAGGGGCAGTCATCGAATCACC 14525 Query 27844 TTCAACCCTCAGCCAGAATCCATCGCCTAATAAGTTAACGTCACTGTCATACCATTCATC 27903 ||| || |||||||| |||| ||| || || | | ||| ||| ||| || Sbjct 14524 TTCTACTTCAAGCCAGAACGCATCACCTTGTATGTGAGCATCAGACTCAAGCCAGAGGTC 14465 Query 27904 AATGTCCTTGATATCGTAGGGTTCACAAGCTTCACACCACGAACCAGCTCTAACCATGCT 27963 ||| ||||| | || | ||| ||||| ||| ||| | ||||| ||| |||| Sbjct 14464 AATATCCTTAAGCGTATATGCTTCGCAAGCCTCAGCCCATGCGCCAGCCTGCACCTTGCT 14405 Query 27964 AATCAATGGATATTT 27978 | || || ||||| Sbjct 14404 GAGCACCGGGTATTT 14390 >seq123396 Length=12579 Score = 105 bits (116), Expect = 2e-18 Identities = 224/329 (68%), Gaps = 4/329 (1%) Strand=Plus/Minus Query 27602 GCTTCCACGACAACACCGATAATCTTGCAGTTCCCGTTGATAGG-AGTCATAGGCCATGA 27660 ||||| ||||| ||||| | ||| ||||||| ||||| || || ||| | || | Sbjct 7549 GCTTCTACGACTACACCAACAATTCTGCAGTTACCGTTTATGGGTAGT-AGCGGGTAGCT 7491 Query 27661 AGGATTCAGGCCTTTCAGGTACTTCTGACCGCCATCTATAACCAGTTTCTTGAATGTTGC 27720 ||| || || ||| | | ||| ||| | ||| ||||| ||| ||||| || || Sbjct 7490 AGGGTTAAGTGGTTTTAAAAATTTCCTACCACTATCAATAACATATTTTTTGAAAGTAGC 7431 Query 27721 TTCGTTCGCGTCAGTCAGTTTGGCTACAACAAGGCTTCCATTCACTGGCTCGCGTCCAGT 27780 ||||||| |||| |||||||| ||||| | ||| |||||| ||||| || || Sbjct 7430 CTCGTTCGTGTCATCAAGTTTGGCCACAACTAAGCTACCATTCTTAGGCTCTTTACCTGT 7371 Query 27781 ATCTACTAACACCAT-ATGACCTTCAGGGATGCTTTGACCTACAGGTGAGGTCATGGAAT 27839 |||||||| | | ||| ||||||||||||||| || | || ||||| || | Sbjct 7370 GTCTACTAAGATCGCCATG-CCTTCAGGGATGCTTATGCCGCTCTGAGATGTCATTGAGT 7312 Query 27840 CACCTTCAACCCTCAGCCAGAATCCATCGCCTAATAAGTTAACGTCACTGTCATACCATT 27899 |||| | || | |||||||||||||| || | | |||| || ||||| Sbjct 7311 CACCCTGTACACGAAGCCAGAATCCATCCCCCTCGACATGGGCGTCTGAATCTAGCCATT 7252 Query 27900 CATCAATGTCCTTGATATCGTAGGGTTCA 27928 |||||||||| || |||| | || ||| Sbjct 7251 CATCAATGTCTTTTGGATCGGACGGCTCA 7223 >seq79893 Length=11432 Score = 105 bits (116), Expect = 2e-18 Identities = 304/468 (65%), Gaps = 6/468 (1%) Strand=Plus/Plus Query 15129 GAGGTGATTGATGCCAAACTGCGCTACCCGAACACCGCGCTGCTCTACGTCGAATTCGAC 15188 |||||| | || ||||||||| |||||||| || || |||||||||||||| || || Sbjct 8753 GAGGTGGTCGACAGCAAACTGCGTTACCCGAATACAGCACTGCTCTACGTCGAGTTTGAT 8812 Query 15189 TCAAGCCAGTTCAACGGCTCTATTCCTCAAATTTCATGCGAACCGCGCGGCCGCGTTATC 15248 | |||||| |||||| | ||| || || | ||| || |||||| || Sbjct 8813 GCCGCCCAGTTTAACGGCAATGCACCTAAAGTTACCTGCAGGCCAAAAGGCCGCAGGATT 8872 Query 15249 CGCGTTCCAGATACCTACGACCCTGAAACCCGCACTTATAGCGGTACATGGACCGGTGCG 15308 || || || | |||| |||| | ||||| |||| ||| | ||| ||| Sbjct 8873 CGGGTGCCGTCGAACTACAACCCCGTCACCCGGGAGTATACCGGCGCGTGGGACGGCAAT 8932 Query 15309 TTTAAGTGGGCATGGACGGATAACCCTGCGTGGATTTTTTACGACCTGGTTGTTTCTGAC 15368 ||| |||||| | | |||||||||| ||||||||||| |||||||| | | | Sbjct 8933 TTTGTGTGGGCGTTCAGTAATAACCCTGCATGGATTTTTTATGACCTGGTGCTGAATAAA 8992 Query 15369 CGGTTTGGCCTCGGGCACCGTTTGACCGCTGCGAATATTGATAAATGGACTCTTTATCAG 15428 || || | || ||||| | || | | ||||| || ||| || ||| Sbjct 8993 ATTTTCGGAATGGGAAACCGTGTCGATGCCTCCATGATTGACAAGTGGGAGCTATATTCC 9052 Query 15429 GTTGCTCAGTATTGTGATCAGATGGTACCAGACGGCAAAGGGGGCAACGGTACAGAACCA 15488 | || || || ||| | | |||| | ||||| || |||||| ||||| Sbjct 9053 ATCGCAGCTTACTGCGATGAAAAGGTATCTAACGGCGCTGG------CGGTACTGAACCG 9106 Query 15489 CGCTATACCTGCAACGTGTACATTCAGGACCGGAACGACGCCTACACAGTCCTGCGTGAT 15548 || | |||||| ||||| || || ||| || | | ||||| || | || ||| ||| Sbjct 9107 CGTTTTACCTGTAACGTTTATATCCAGAGCCAGCAGGACGCGTATAACGTTCTGAAGGAT 9166 Query 15549 TTTGCCGCTATCTTCCGTGGCATGACCTACTGGGGCGGGGATCAGATT 15596 | || || |||||||| || || |||| |||||| |||||||| Sbjct 9167 ATCGCAGCAATCTTCCGGGGAATTACCTTCTGGGGGAATAATCAGATT 9214 >seq75855 Length=31220 Score = 93.3 bits (102), Expect = 1e-14 Identities = 332/511 (65%), Gaps = 15/511 (3%) Strand=Plus/Plus Query 15123 TTCACCGAGGTGATTGATGCCAAACTGCGCTACCCGAACACCGCGCTGCTCTACGTCGAA 15182 ||| | ||||| || || ||||||||| || || || || || || || || |||||| Sbjct 12487 TTCGCTGAGGTTATCGACAGCAAACTGCGTTATCCAAATACTGCTCTACTTTATGTCGAA 12546 Query 15183 TTCGACTCAAGCCAGTTCAACGGCTCTATTCCTCAAATTTCATGCGAACCGCGCGGCCGC 15242 | || || || || || ||| || | || ||||| | ||| ||| Sbjct 12547 GTGGATGCATCGCAATTTAATGGCCAGGCACCAAAGATCACATGCAAGCCGAAAGGCAAG 12606 Query 15243 GTTATCCGCGTTCCAGATACCTACGACCCTGAAACCCGCACTTATAGCGGTACATGGACC 15302 | | |||||||| | ||||| |||| | | | ||||| ||||| || ||| Sbjct 12607 CTGGTACGCGTTCCGACGAATTACGAACCTGTTAGCAGGACTTACAGCGGAACCTGGCTG 12666 Query 15303 GGTGCGTTTAAGTGGGCATGGACGGATAACCCTGCGTGGATTTTTTACGACCTGGTTGTT 15362 || | || || | || | || |||| || || |||||||||||||| ||||| | Sbjct 12667 GGCGACTTCAAATACGCTTACACCAATAATCCGGCATGGATTTTTTACGATCTGGTGCTG 12726 Query 15363 TCTGACCGGTTTGGCCTCGGGCAC-CGT-TTGACCGCTGCGAATATTGATAAATGGACTC 15420 | | | ||| | |||||| || |||| || | | ||||| | ||| | Sbjct 12727 GATAAAATCTGTGGTAT-GGGCACGCGCGTTGATGCCTCC-ATGATTGACAGGTGGGAGC 12784 Query 15421 TTTA-TCAGGTTGCTCAGTATTGTGATCAGATGGTACCAGACGGCAAAGGGGGCAACGGT 15479 | || ||| | || ||||| || ||||| ||||| ||| ||||| || |||| Sbjct 12785 TGTACTCAA-TCGCGCAGTACTGCGATCAAATGGTGCCAAACGGCGCTGGCGGCA----- 12838 Query 15480 ACAGAACCACGCTATACCTGCAACGTGTACATTCAGGACCGGAACGACGCCTACACAGTC 15539 | || || |||| |||||||||||||| || ||| || | | || ||||| |||||| Sbjct 12839 -CTGAGCCGCGCTTTACCTGCAACGTGTTTATCCAGAGCCAGCAGGATGCCTATACAGTC 12897 Query 15540 CTGCGTGATTTTGCCGCTATCTTCCGTGGCATGACCTACTGGGGCGGGGATCAGATTGTG 15599 ||| || |||| || || ||||| || || || | |||||| ||||||| | Sbjct 12898 CTGAAGGACATTGCGGCGATATTCCGAGGAATCACGTTCTGGGGTAACAGTCAGATTTTT 12957 Query 15600 GCCCTGGCTGACATGCCGCGCGATGTTGATT 15630 | |||||| |||||| | ||||||| Sbjct 12958 GTGAACGCTGACGTGCCGC---AGGTTGATT 12985 >seq153530 Length=10618 Score = 89.7 bits (98), Expect = 1e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 30920 ATTGCTCACATCTCCGGAAGCCTGAAGGCGATGGCGAAAGACCTGAAAACGCCAGTTATC 30979 |||||| | ||||| || |||| || |||||||||| ||||| ||||| || Sbjct 9319 ATTGCTGAGATCTCACGATCTTTGAAAGCCTTGGCGAAAGAACTGAATGTACCAGTGGTC 9260 Query 30980 TCCCTAAGTCAGCTTTCGCGCGATGTTGAGAAGCGACCAAACAAACGCCCGACAAACGCA 31039 || || |||||| ||| | ||| |||| || | ||||| || ||| || Sbjct 9259 GCCTTATCACAGCTTAACCGCTCATTGGAGCAGCGCGCAGATAAACGGCCAGTCAACTCA 9200 Query 31040 GATTTGCGTGATTCAGGAAGCATTGAACAGGACGCAGACTCAATCATCATGCTCTATCGG 31099 ||||||||||| |||||| ||||| ||||| || |||| ||||| | ||||||| Sbjct 9199 GATTTGCGTGAGTCAGGATCGATTGAGCAGGATGCCGACTTGATCATGTTTATCTATCGT 9140 Query 31100 GAAGCAGTATATGACGAGAACAGT 31123 || | || ||| |||| |||||| Sbjct 9139 GACGAGGTGTATCACGAAAACAGT 9116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124021982122776