Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_019715.1 Length=39578 Score E Sequences producing significant alignments: (Bits) Value seq196645 197 3e-46 seq123396 111 4e-20 seq37562 109 1e-19 seq79893 105 2e-18 seq75855 93.3 1e-14 seq235341 82.4 2e-11 >seq196645 Length=3446 Score = 197 bits (218), Expect = 3e-46 Identities = 282/395 (71%), Gaps = 4/395 (1%) Strand=Plus/Minus Query 23599 CTGATGTTTATGTTCGTCGGTATCTGCATCTTTCGCATCATCAATGCCGAACAAACCATT 23658 ||| || | | | || || || || ||||| || | |||||||| | |||| | |||| Sbjct 3365 CTGGTGATGAAGCTCATCTGTGTCAGCATCCTTTGAGTCATCAATATCAAACAGAACATT 3306 Query 23659 AAGGCAATACTTGCGCGCATAAGAGCTTGTAGCTCCAGTAACTTGTGCAGAATCCATTCC 23718 ||| |||||||| | ||||| || || || || |||||||| || || || |||||||| Sbjct 3305 AAGACAATACTTCCTTGCATACGAACTAGTTGCCCCAGTAACCTGAGCCGAGTCCATTCC 3246 Query 23719 TTTCTTGCTTTCTTCCTCTCGTGCAAGAGCAGTTGCCGTATGACTGTT--TTCGCCATCG 23776 |||||||| || || || | ||| | ||| | |||||||| |||| ||| || || Sbjct 3245 CTTCTTGCTCTCCTCTTCCCTTGCCAAGGCACTCGCCGTATG--TGTTGATTCACCGTCT 3188 Query 23777 GTAATAGTTGCCGTGGCTTTCACGTAATACCGATCACCAATCAACACAACTTCATCGCTG 23836 ||||| ||||| || | || || || ||| || |||| |||||||| || Sbjct 3187 GTAATCGTTGCTACAGCCCTGACATAGTAACGACTCCCTATCATTACAACTTCGTCAGAT 3128 Query 23837 ATTGATAAAAACAGGCCATTCAGTAACGGCTTAACGCCTTCAAGAATGTCTTCGCAGCTT 23896 || | || || || || || | || ||||| || || | ||| ||||| ||| | Sbjct 3127 ATACTCAGGAAGAGACCGTTAAGAAGAGGTTTAACCCCCTCCAAAATATCTTCACAGATA 3068 Query 23897 CTGTATTTATATTTACCGAATGAGTTGTACTGATTCTTTGGCGCGTTCAGATTCTCCTGA 23956 | |||||||| |||||||| ||||||||| |||||||| ||||| || | |||| Sbjct 3067 CGATATTTATACTTACCGAAAATGTTGTACTGGTTCTTTGGTGCGTTAAGTGTTCGCTGA 3008 Query 23957 ATAGCTGCCAGTCTTGCGTAAAATTCTTTGCTCAT 23991 || |||| || |||||||||||||||| ||||| Sbjct 3007 ATCTCTGCTAGCTTTGCGTAAAATTCTTTACTCAT 2973 >seq123396 Length=12579 Score = 111 bits (122), Expect = 4e-20 Identities = 327/493 (66%), Gaps = 26/493 (5%) Strand=Plus/Minus Query 22003 AAGCTCCTTCATCAGATGCTTATGCTGTGGGGGGCGAGGCTCTCAGAGCTTAGGCTGGCA 22062 ||||| || ||||||||||| |||||||||| || || | ||||| ||| |||| || Sbjct 12578 AAGCTGCTGCATCAGATGCTGCTGCTGTGGGGAGCCAGATTGTCAGAACTTCGGCTCTCA 12519 Query 22063 ACAAAGACAGAATTTGAC-CTGCTGGACAACGTATGGACCGTACCGAAAGAGCATAGCAA 22121 || | || || || ||| | || | ||||||| ||| | ||| || Sbjct 12518 ACCCCTGCTGAGTTCAACACTGAAG-ACTTCATATGGACTACACCTGTCGCCCATTCGAA 12460 Query 22122 GATGGGTAATGTTATCCGCCGTCCAATCTTCGAACAAATTAAGCCTTTTCTCGAAAAG-- 22179 |||||| |||||||||||||| || || || || || || ||||| | | | |||| | Sbjct 12459 GATGGGGAATGTTATCCGCCGCCCTATATTTGAGCAGATGAAGCCATATGTTGAAAGGCT 12400 Query 22180 ----GCCATGACAACGTACAATGATGTTCTTTTCCCTGGAGAAGACATAAACAAACCGAT 22235 || |||| ||| | | |||||| || ||| | || | ||||| |||| Sbjct 12399 ACTTGCGATGAAAACCC-CGGTAATGTTC-----CCCGGACAGGAACTGGACAAAGCGAT 12346 Query 22236 CAGC--ATCGCTGCAGCCAACCGATTCGTAAACAGAATAAGGGGAGG--GATGGATCTAG 22291 | | ||| || | || || | | | | || | | | | | | ||| ||| | Sbjct 12345 CGACCGATC-CTCC-GCAAATCTGTACATGAAAAACCT--GCGCACGAAGATAGATATCC 12290 Query 22292 GTTACTGGCGAACACATGATTTCAGAAGAACGCTTGTTACACGTCTGTCCGAGATGAATG 22351 | ||||| || ||||||||||| | | || ||||| | || || ||| | Sbjct 12289 CCGAATGGCGCACTCATGATTTCAGGCGCTCACTGGTTACCAACTTATC--AGGCGAAGG 12232 Query 22352 T--CGAGCCTCATGTTACTGAGCGAATGCTCGGTCATGAACTTGGCGGGATAATGTCCGT 22409 | | ||| || || || || ||||| || ||||| || |||||| ||||| | || Sbjct 12231 TATCATGCCCCACGTCACCGAAAAGATGCTGGGGCATGAGCTGGGCGGGGTAATGGCGGT 12172 Query 22410 ATACAATAAACACGACTGGATAGAGGCTCAGCGCAAAGCGTATGAGCTTCACGCTGATAA 22469 || || ||||| |||||| | |||| ||||||||||| ||||||||| |||||||||| Sbjct 12171 TTATAACAAACATGACTGGCTTGAGGAGCAGCGCAAAGCCTATGAGCTTTACGCTGATAA 12112 Query 22470 ATTGTTCTGGCAC 22482 | | | |||||| Sbjct 12111 AGTCCTGTGGCAC 12099 >seq37562 Length=17931 Score = 109 bits (120), Expect = 1e-19 Identities = 353/542 (65%), Gaps = 16/542 (3%) Strand=Plus/Plus Query 21949 GAACTGGCTAAGATTTGGCTTGCTATTGAAAGAAGCCGTGCGTCTACGTCAAATAAGCTC 22008 || ||||| ||| | ||||| || | |||| | | | || | | || || ||||| Sbjct 2014 GAGCTGGCGAAGGTGTGGCTGGCGTTGGAAAACAACAAGGTGTTTTCATCTAACAAGCTG 2073 Query 22009 CTTCATCAGATGCTTATGCTGTGGGGGGCGAGGCTCTCAGAGCTTAGGCTGGCAACAAAG 22068 || ||||||||||| |||||||||| || || | ||||| ||| |||| |||| Sbjct 2074 CTGCATCAGATGCTGCTGCTGTGGGGAGCCAGATTGTCAGAACTTCGGCTCTCAACTCCT 2133 Query 22069 ACAGAATTTGAC-CTGCTGGACAACGTATGGACCGTACCGAAAGAGCATAGCAAGATGGG 22127 | || || || ||| | || | ||||||| ||| | ||| |||||||| Sbjct 2134 GCTGAGTTCAACACTGAAG-ACTTCATATGGACTACACCTGTCGCCCATTCGAAGATGGG 2192 Query 22128 TAATGTTATCCGCCGTCCAATCTTCGAACAAATTAAGCCTTTTCTCGAAAAG------GC 22181 ||||| |||||||| || || || || || || ||||| | | | |||| | || Sbjct 2193 GAATGTGATCCGCCGCCCTATATTTGAGCAGATGAAGCCATATGTTGAAAGGCTGCTTGC 2252 Query 22182 CATGACAACGTACAATGATGTTCTTTTCCCTGGAGAAGACATAAACAAACCGATCAGCAT 22241 |||| ||| | | |||||| || ||| | || | ||||| ||||| | Sbjct 2253 GATGAAAACCC-CGGTAATGTTC-----CCCGGACAGGAACTGGACAAAGCGATCGACCG 2306 Query 22242 CGCTGCAGCCAACCGATTCGTAAACAGAATAAGGGGAGGGATGGATCTAGGTTACTGGCG 22301 | | || || | | | | || | | | | || ||| | | | ||||| Sbjct 2307 GTCCTCCGCAAATCTGTACATGAAAAACCTGCGCGCGAAAATAGATATCCCTGAGTGGCG 2366 Query 22302 AACACATGATTTCAGAAGAACGCTTGTTACACGTCTGTCCG-AGATGAATGTCGAGCCTC 22360 || ||||||||||| | | || ||||| | || | ||| | | ||| ||| | Sbjct 2367 CACTCATGATTTCAGGCGCTCACTGGTTACGAACTTATCAGGAGAAGG-TATCGTGCCCC 2425 Query 22361 ATGTTACTGAGCGAATGCTCGGTCATGAACTTGGCGGGATAATGTCCGTATACAATAAAC 22420 | || || || ||||| || ||||| || |||||| ||||| | | || || |||| Sbjct 2426 ACGTCACCGAAAATATGCTGGGGCATGAGCTGGGCGGGGTAATGGCGATTTATAACAAAC 2485 Query 22421 ACGACTGGATAGAGGCTCAGCGCAAAGCGTATGAGCTTCACGCTGATAAATTGTTCTGGC 22480 | |||||| | || | ||||||||||| ||||||||| ||||||||||| | | |||| Sbjct 2486 ATGACTGGCTTGATGAGCAGCGCAAAGCCTATGAGCTTTACGCTGATAAAGTCCTGTGGC 2545 Query 22481 AC 22482 || Sbjct 2546 AC 2547 >seq79893 Length=11432 Score = 105 bits (116), Expect = 2e-18 Identities = 304/468 (65%), Gaps = 6/468 (1%) Strand=Plus/Plus Query 15081 GAGGTGATTGATGCCAAACTGCGCTACCCGAACACCGCGCTGCTCTACGTCGAATTCGAC 15140 |||||| | || ||||||||| |||||||| || || |||||||||||||| || || Sbjct 8753 GAGGTGGTCGACAGCAAACTGCGTTACCCGAATACAGCACTGCTCTACGTCGAGTTTGAT 8812 Query 15141 TCAAGCCAGTTCAACGGCTCTATTCCTCAAATTTCATGCGAACCGCGCGGCCGCGTTATC 15200 | |||||| |||||| | ||| || || | ||| || |||||| || Sbjct 8813 GCCGCCCAGTTTAACGGCAATGCACCTAAAGTTACCTGCAGGCCAAAAGGCCGCAGGATT 8872 Query 15201 CGCGTTCCAGATACCTACGACCCTGAAACCCGCACTTATAGCGGTACATGGACCGGTGCG 15260 || || || | |||| |||| | ||||| |||| ||| | ||| ||| Sbjct 8873 CGGGTGCCGTCGAACTACAACCCCGTCACCCGGGAGTATACCGGCGCGTGGGACGGCAAT 8932 Query 15261 TTTAAGTGGGCATGGACGGATAACCCTGCGTGGATTTTTTACGACCTGGTTGTTTCTGAC 15320 ||| |||||| | | |||||||||| ||||||||||| |||||||| | | | Sbjct 8933 TTTGTGTGGGCGTTCAGTAATAACCCTGCATGGATTTTTTATGACCTGGTGCTGAATAAA 8992 Query 15321 CGGTTTGGCCTCGGGCACCGTTTGACCGCTGCGAATATTGATAAATGGACTCTTTATCAG 15380 || || | || ||||| | || | | ||||| || ||| || ||| Sbjct 8993 ATTTTCGGAATGGGAAACCGTGTCGATGCCTCCATGATTGACAAGTGGGAGCTATATTCC 9052 Query 15381 GTTGCTCAGTATTGTGATCAGATGGTACCAGACGGCAAAGGGGGCAACGGTACAGAACCA 15440 | || || || ||| | | |||| | ||||| || |||||| ||||| Sbjct 9053 ATCGCAGCTTACTGCGATGAAAAGGTATCTAACGGCGCTGG------CGGTACTGAACCG 9106 Query 15441 CGCTATACCTGCAACGTGTACATTCAGGACCGGAACGACGCCTACACAGTCCTGCGTGAT 15500 || | |||||| ||||| || || ||| || | | ||||| || | || ||| ||| Sbjct 9107 CGTTTTACCTGTAACGTTTATATCCAGAGCCAGCAGGACGCGTATAACGTTCTGAAGGAT 9166 Query 15501 TTTGCCGCTATCTTCCGTGGCATGACCTACTGGGGCGGGGATCAGATT 15548 | || || |||||||| || || |||| |||||| |||||||| Sbjct 9167 ATCGCAGCAATCTTCCGGGGAATTACCTTCTGGGGGAATAATCAGATT 9214 >seq75855 Length=31220 Score = 93.3 bits (102), Expect = 1e-14 Identities = 332/511 (65%), Gaps = 15/511 (3%) Strand=Plus/Plus Query 15075 TTCACCGAGGTGATTGATGCCAAACTGCGCTACCCGAACACCGCGCTGCTCTACGTCGAA 15134 ||| | ||||| || || ||||||||| || || || || || || || || |||||| Sbjct 12487 TTCGCTGAGGTTATCGACAGCAAACTGCGTTATCCAAATACTGCTCTACTTTATGTCGAA 12546 Query 15135 TTCGACTCAAGCCAGTTCAACGGCTCTATTCCTCAAATTTCATGCGAACCGCGCGGCCGC 15194 | || || || || || ||| || | || ||||| | ||| ||| Sbjct 12547 GTGGATGCATCGCAATTTAATGGCCAGGCACCAAAGATCACATGCAAGCCGAAAGGCAAG 12606 Query 15195 GTTATCCGCGTTCCAGATACCTACGACCCTGAAACCCGCACTTATAGCGGTACATGGACC 15254 | | |||||||| | ||||| |||| | | | ||||| ||||| || ||| Sbjct 12607 CTGGTACGCGTTCCGACGAATTACGAACCTGTTAGCAGGACTTACAGCGGAACCTGGCTG 12666 Query 15255 GGTGCGTTTAAGTGGGCATGGACGGATAACCCTGCGTGGATTTTTTACGACCTGGTTGTT 15314 || | || || | || | || |||| || || |||||||||||||| ||||| | Sbjct 12667 GGCGACTTCAAATACGCTTACACCAATAATCCGGCATGGATTTTTTACGATCTGGTGCTG 12726 Query 15315 TCTGACCGGTTTGGCCTCGGGCAC-CGT-TTGACCGCTGCGAATATTGATAAATGGACTC 15372 | | | ||| | |||||| || |||| || | | ||||| | ||| | Sbjct 12727 GATAAAATCTGTGGTAT-GGGCACGCGCGTTGATGCCTCC-ATGATTGACAGGTGGGAGC 12784 Query 15373 TTTA-TCAGGTTGCTCAGTATTGTGATCAGATGGTACCAGACGGCAAAGGGGGCAACGGT 15431 | || ||| | || ||||| || ||||| ||||| ||| ||||| || |||| Sbjct 12785 TGTACTCAA-TCGCGCAGTACTGCGATCAAATGGTGCCAAACGGCGCTGGCGGCA----- 12838 Query 15432 ACAGAACCACGCTATACCTGCAACGTGTACATTCAGGACCGGAACGACGCCTACACAGTC 15491 | || || |||| |||||||||||||| || ||| || | | || ||||| |||||| Sbjct 12839 -CTGAGCCGCGCTTTACCTGCAACGTGTTTATCCAGAGCCAGCAGGATGCCTATACAGTC 12897 Query 15492 CTGCGTGATTTTGCCGCTATCTTCCGTGGCATGACCTACTGGGGCGGGGATCAGATTGTG 15551 ||| || |||| || || ||||| || || || | |||||| ||||||| | Sbjct 12898 CTGAAGGACATTGCGGCGATATTCCGAGGAATCACGTTCTGGGGTAACAGTCAGATTTTT 12957 Query 15552 GCCCTGGCTGACATGCCGCGCGATGTTGATT 15582 | |||||| |||||| | ||||||| Sbjct 12958 GTGAACGCTGACGTGCCGC---AGGTTGATT 12985 >seq235341 Length=2087 Score = 82.4 bits (90), Expect = 2e-11 Identities = 119/167 (71%), Gaps = 1/167 (1%) Strand=Plus/Minus Query 28534 GCTATGCAGAAATCACCTGGCTCAACAGCCTGCTCAGGGTCAACCAGAATTAACATCCCG 28593 |||| |||||||||||| ||||| | ||| || || ||||| |||| ||| || Sbjct 660 GCTACGCAGAAATCACCGCTTTCAACTGGAACCTCTGGATCTACCAGTATTAGCATTCCC 601 Query 28594 TCAGGAAAACTAGGTTTGGATCCTGTTGGCGCGGTCATGGAATTACCTTCAACCTCAAGC 28653 || || ||||| ||| || |||| || || ||||| || | |||| |||||||||| Sbjct 600 TCTGGGAAACTTGGTCTGCTTCCTTGAGGTGCCGTCATCGAGTGACCTGAAACCTCAAGC 541 Query 28654 CAGAATGCAGAATCACTGGCTTTTTTGGTTG-TGCTTACCCATCTCT 28699 || |||| | | |||||| ||||||| ||| || |||||| Sbjct 540 CAAAATGAATTCTTTGAGGCTTTCTTGGTTGAGGCTATCCAATCTCT 494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 125777910463080