Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_019716.1 Length=44510 Score E Sequences producing significant alignments: (Bits) Value seq201909 268 3e-67 seq37562 181 3e-41 seq194023 145 2e-30 seq399127 105 2e-18 >seq201909 Length=21394 Score = 268 bits (296), Expect = 3e-67 Identities = 252/318 (79%), Gaps = 11/318 (3%) Strand=Plus/Minus Query 43400 ACCATTACTGACATGCAGCAACGCCAGCGTGCTGCTGATGTACTCGATGCTAAATACACG 43459 ||||| | ||| |||||| ||||||||| | || || || || || || || ||||| Sbjct 4124 ACCATCAATGATATGCAGACACGCCAGCGCGATGTTGCTGCTCTGGACGCCAAGTACACA 4065 Query 43460 AAGGAGTTGGCTGATGCGAAAGCTGAAAATGATGCTCTTCGGCGCAAGCTTGATAATGGT 43519 |||||||| || ||||| ||||||||| | |||| | | || |||||||||||||||| Sbjct 4064 AAGGAGTTAGCCGATGCACAAGCTGAAACTACTGCTTTGCAGCACAAGCTTGATAATGGT 4005 Query 43520 GGTCGGGTGCTCGTCAAAGGAAAATGCTCTGTGCCATCCTCAGCCG--AA--ACCTCCAG 43575 |||||||||| |||||||||||| ||| | |||| |||||| || |||||| Sbjct 4004 GGTCGGGTGCGCGTCAAAGGAAACTGC------CAATCC-CAGCCGTCAACTACCTCCGC 3952 Query 43576 CGCCTCCGGCATGGGCAATGATGCCACCGTCGAACTCTCTCCAGTTGCTGGACGAAACGT 43635 | || || || |||||||||||| ||||||||||||||| ||||||||||||||||||| Sbjct 3951 CCCCCCCAGCTTGGGCAATGATGGAACCGTCGAACTCTCTTCAGTTGCTGGACGAAACGT 3892 Query 43636 TCTCGGTATCCGGGACGGAATCATCAGAGACCAGACAGCACTGAGAACGCTTCAGGAATA 43695 |||| ||||||| ||||||| | |||||| |||||||||| ||||||||||||| Sbjct 3891 TCTCAGTATCCGATCCGGAATCCAGCGCGACCAGTCAGCACTGAGGGCGCTTCAGGAATA 3832 Query 43696 TATCAGGACGCAATGCCT 43713 |||| || |||||||| Sbjct 3831 CATCAACACTCAATGCCT 3814 >seq37562 Length=17931 Score = 181 bits (200), Expect = 3e-41 Identities = 250/346 (72%), Gaps = 3/346 (1%) Strand=Plus/Plus Query 38614 AGGATAAGGCGAAAAAGGTGCTGGCGCTGAAAGTGGATCCGGAGTCGCCGGAGTCTTTTA 38673 |||| |||| || ||||||||| | || | ||||| || |||||||| | ||| Sbjct 14618 AGGAGCAGGCAAAGCAGGTGCTGGAGATGGCTATCGATCCTGAAACGCCGGAGACGTTTC 14677 Query 38674 TGTTACGCCCAAAACGTCGCCGCTGGGTTAATGAAAAGTACACGCGCTGGGTTAAGACAC 38733 ||||||| ||||| || ||||| ||| || || ||||| || | |||| ||| | Sbjct 14678 TGTTACGGCCAAAGCGCCGCCGATGGAGCAACGAGAAGTATACCCAGTGGGCCAAGCAGC 14737 Query 38734 AGCCGTGTGCATGTTGTGGAAAGCCCGCTGATGATCCCCACCACCTGATAGGTCACGGTC 38793 ||||||| || ||||| || || || || || ||||||||||| || |||| | Sbjct 14738 AGCCGTGCTTGTGCTGTGGGAAAAAAGCAGACGACCCGCACCACCTGATCGGATACGGCC 14797 Query 38794 AGGGTGGAATGGGAACAAAAGCGCATGACCTTTTTGTGTTGCCTTTGTGCAGAAAGCATC 38853 |||| || |||||||| ||||||||||| || || |||||||| | |||||| ||| | Sbjct 14798 AGGGCGGTATGGGAACTAAAGCGCATGATCTATTCGTGTTGCCGCTATGCAGAGCGCACC 14857 Query 38854 ACGACGAGCTGCATGCGGAT-ACCGTGGCATTTGAAGAGAAGTATGGCTCCCAGCTGGAG 38912 |||| || || ||||| ||| ||| || ||||| | ||||| ||| | |||| |||| Sbjct 14858 ACGATGAACTTCATGCTGATGTGCGT-GCGTTTGAGGCTAAGTACGGCACACAGCCGGAG 14916 Query 38913 CTGATATTTCGTTTTATCGATCGTGCGCTGGCAATTGGCG-TATTG 38957 |||| |||| ||||| | || ||||| |||||| ||||| Sbjct 14917 TTGATCATTCGCACGATCGACAGAGCCTTGGCACTTGGCGTTATTG 14962 Score = 102 bits (112), Expect = 2e-17 Identities = 237/354 (67%), Gaps = 15/354 (4%) Strand=Plus/Plus Query 37355 CCGGTGAGTGTGATTCATGGGGGAAATGAACGGGGAACGTATGTCTGCAAGGAACTGGTG 37414 || || || || ||||| || || || | || || || ||||| ||||| || ||||| Sbjct 13338 CCAGTTAGAGTAATTCACGGTGGTGATAACCGTGGCACCTATGTATGCAAAGAGCTGGTT 13397 Query 37415 TATGCCTATGCAATGTGGATCAGCCCGTCATTCCATCTGAAGGTGATCCGTACTTTCGAT 37474 || | |||||||||||||||||| |||||||| |||||||| ||| | || || ||| Sbjct 13398 TACTCTTATGCAATGTGGATCAGCTCGTCATTCAGCCTGAAGGTTATCAGGACCTTTGAT 13457 Query 37475 ATGGTA--ACCAGCGCACCGGAAAAATTATCCGGACAGGCT---GCTGACAAGATGCAGG 37529 ||| ||| ||| | | | | | |||| | | || || || |||||| Sbjct 13458 TCAGTAGTGACAGGGCAAC--ATACCTCACAGGGACCGAATCGGGCAGATCAGGTGCAGG 13515 Query 37530 CTGGCGTGATCCTGCTGGACTTTATGCGCCGGGAGT----TAAACCTGTCTAACTCTTCA 37585 | ||||| || || || || | | ||| || | || ||||| ||||| ||| Sbjct 13516 CGGGCGTAATTCTACTTGAGTCT----GCCTCACGTACCCTGAATCTGTCGAACTCATCA 13571 Query 37586 GTGCTTGGTGCCTGTCAGAAACTCCAGGAGGCTGTTGGCTTACCGAATCTGGCACCGCGC 37645 ||| ||||| | |||||||| ||||| | |||| | || || || || Sbjct 13572 AAGCTGGGTGCTTACCAGAAACTTCAGGATTTCGCTGGCCTGCCAAACATGATGCCTTCA 13631 Query 37646 TATGCCATTGATGCTCCTGCTGATGCACACGATGGCTCAAGTCGCCCGACACTG 37699 ||||||||||| || || ||||| | ||||| ||||| ||||| ||| || Sbjct 13632 TATGCCATTGACGCGCCCTCTGATTCCATTGATGGTTCAAGCCGCCCCACAATG 13685 Score = 84.2 bits (92), Expect = 6e-12 Identities = 218/330 (66%), Gaps = 2/330 (1%) Strand=Plus/Plus Query 28998 CCATCATCAAGCCCGAGATCGCGGCGTTCGGTTGCCAGCATGATGAGATCGGC-ATATTT 29056 |||||||| || || | ||| ||||| || || ||||||| | || || || || ||| Sbjct 4491 CCATCATCCAGACCCAAATCACGGCGCTCAGTACCCAGCATCACCAGGTCTGCCATCTTT 4550 Query 29057 CACAGGCGTGCTCATAACCGGGGGTAACCCGTATTTCTCACGGATTACGGCATCTATTTT 29116 || | | ||| | || || | ||| | || | ||| || || || || | Sbjct 4551 -ACTGCAGGTGACATTGCTGGTGGAAGTCCGAACTTATTACGAATCACTGCGTCAACACG 4609 Query 29117 TTCTTCCATCCGTTTATAGTCAGGAAGAAGTCGTTTCAGTGGCGCGGGGATGTCCTGGCA 29176 | | || || | ||||||||| || || ||||||||| | |||||| ||| Sbjct 4610 TCCCTCAATGGCCTGATAGTCAGGTAGCAGGGCTTTCAGTGGTGAATTGATGTCGCTGCA 4669 Query 29177 ATATGCTTCTGTTGCATCATGCATTAACGCTTCAAAAGCAAATTCCTGCGGCACCAGCTG 29236 ||| ||||| | ||||| |||| | ||||||| ||| ||| ||||||||||| | Sbjct 4670 ATAAGCTTCAGCGGCATCGTGCAGAAGGGCTTCAAGAGCGTGTTCATGCGGCACCAGATA 4729 Query 29237 GCTGCAAAGCACCGCATGCTGGGCGACACTGTAGAAGTGTGAAAGATGTCCTGCAAAGCG 29296 |||| | || | |||||||| || |||||||| | | ||| || | || || Sbjct 4730 GCTGACGTGAACAGAGTGCTGGGCTACGCTGTAGAATTCGCTCACATGGCCAGTGAACCG 4789 Query 29297 ACAGATATTTGAAAGGGAAACTGCGATATC 29326 || ||||| || || | | |||||||| Sbjct 4790 GCAAATATTCGACAGAGCGGCAGCGATATC 4819 >seq194023 Length=5833 Score = 145 bits (160), Expect = 2e-30 Identities = 146/190 (77%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 34465 CATGAGTATGGAGCTGATGGTTAAAGCGATGAAAATTCGAGTGGGTAATCCATTGCGAAA 34524 |||||| ||| | | |||| |||||| |||| ||| || || || ||||| |||| Sbjct 1271 CATGAGCATGAATTTAATGGCTAAAGCCATGAGCATTAAGGTTGGCAACCCATTAAGAAA 1212 Query 34525 ACTGGTTCTGATCAAGCTGGCTGATAATGCCAGCGATCAGGGTGAGTGCTGGCCCAGCTA 34584 || || ||||| ||||| ||||| || |||| |||| | || || |||||||| ||| Sbjct 1211 GCTTGTGCTGATAAAGCTTGCTGACAACGCCAACGATAAAGGCGAATGCTGGCCTTCCTA 1152 Query 34585 CCAGCATATTGCTGACCAGTGCGAGATTAGCAAACGTTCTGTGATGAATCATATTGCGGC 34644 |||||| ||||| |||||||||||||| ||||| || || |||||| |||||||| | Sbjct 1151 CCAGCACATTGCCGACCAGTGCGAGATAAGCAAGCGGTCAGTGATGCGTCATATTGATGA 1092 Query 34645 CCTTTGTGAG 34654 |||||| ||| Sbjct 1091 CCTTTGCGAG 1082 >seq399127 Length=240 Score = 105 bits (116), Expect = 2e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 23583 GGCTGTCGTTGGGCGATATCCCAGGCTTCCCCAAGCAAGGCTACTTTCATGTGGTTGCCT 23642 ||||||| | || || ||||| || || ||||| | | || ||| ||||| ||| Sbjct 10 GGCTGTCTAAGCGCTATGTCCCAAGCATCACCAAGTAGAGGGACAAGCATATGGTTCCCT 69 Query 23643 TCCTTTTTGCGTGGATCTTTCCTGTCTCTTACGAGTATAGATTTTTGTTCCTGGTCGAGA 23702 ||||||| | ||||||||| || |||||||| | | | ||| |||| | |||| | Sbjct 70 GCCTTTTTCCTTGGATCTTTTCTATCTCTTACAACAACTGCTTTCTGTTTTTCATCGATA 129 Query 23703 TCTTCCCATCGTAACCGGCATACTTCTCCGATTCGCATACAGGACCACACAGAAAATTTG 23762 || ||||| | | | ||| |||||||| | || ||||||| | |||||| ||| Sbjct 130 TCATCCCACCTGATCTTGCAAACTTCTCCAACTCTCATACAGCTAAGAATAGAAAAATTG 189 Query 23763 AGGATATCAACGAACGGAATTTT 23785 || ||||||||||| || ||||| Sbjct 190 AGAATATCAACGAAAGGGATTTT 212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141466748460144